Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35645 * 116.99986 * 2 1 4 4 C 1.38702 * 120.15061 * 359.72314 * 3 2 1 5 5 C 1.38054 * 120.08838 * 180.29933 * 4 3 2 6 6 C 1.38562 * 120.40442 * 359.95298 * 5 4 3 7 7 S 1.76196 * 119.84733 * 180.02562 * 6 5 4 8 8 N 1.65604 * 107.21860 * 270.02099 * 7 6 5 9 9 O 1.42098 * 106.40480 * 23.56174 * 7 6 5 10 10 O 1.42100 * 106.40265 * 156.48167 * 7 6 5 11 11 C 1.37765 * 120.30415 * 0.04550 * 6 5 4 12 12 C 1.39764 * 119.90653 * 359.97438 * 11 6 5 13 13 C 1.47402 * 120.20240 * 179.97438 * 12 11 6 14 14 O 1.21506 * 120.00203 * 180.02562 * 13 12 11 15 15 O 1.34752 * 119.99364 * 0.02562 * 13 12 11 16 16 C 1.45203 * 116.99784 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47325 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47265 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99950 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47446 * 59.99993 * 22 20 18 24 24 H 1.48495 * 109.47448 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47082 * 300.00293 * 22 20 18 26 26 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47424 * 299.99794 * 1 2 3 28 28 H 1.08999 * 109.47372 * 60.00350 * 1 2 3 29 29 H 1.08006 * 119.96125 * 0.27521 * 4 3 2 30 30 H 1.07998 * 119.79846 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99806 * 150.00305 * 8 7 6 32 32 H 0.96996 * 119.99607 * 330.00346 * 8 7 6 33 33 H 1.08006 * 120.04741 * 179.97438 * 11 6 5 34 34 H 1.09005 * 109.47213 * 300.00222 * 16 15 13 35 35 H 1.09006 * 109.47237 * 59.99770 * 16 15 13 36 36 H 1.09008 * 109.47200 * 299.99613 * 17 16 15 37 37 H 1.08993 * 109.47139 * 60.00020 * 17 16 15 38 38 H 0.97002 * 119.99591 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3738 -0.0058 5 6 1.9205 3.6032 -0.0120 6 6 3.3038 3.6840 -0.0116 7 16 4.0901 5.2607 -0.0189 8 7 4.3093 5.6918 -1.6027 9 8 3.1507 6.1802 0.5209 10 8 5.3874 5.0647 0.5269 11 6 4.0671 2.5371 -0.0058 12 6 3.4446 1.2858 0.0001 13 6 4.2549 0.0545 0.0057 14 8 3.7100 -1.0315 0.0104 15 8 5.6001 0.1334 0.0056 16 6 6.3339 -1.1196 0.0119 17 6 7.8364 -0.8308 0.0102 18 6 8.5979 -2.1312 0.0160 19 1 8.0637 -3.0698 0.0201 20 6 9.9767 -2.1227 0.0151 21 7 10.6272 -0.9797 0.0097 22 14 10.9206 -3.7346 0.0217 23 1 10.5660 -4.5209 -1.1871 24 1 12.3789 -3.4543 0.0201 25 1 10.5674 -4.5101 1.2378 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2137 2.3194 -0.0058 30 1 1.3301 4.5075 -0.0169 31 1 4.3078 6.6284 -1.8551 32 1 4.4393 5.0077 -2.2780 33 1 5.1450 2.6049 -0.0059 34 1 6.0739 -1.6885 0.9046 35 1 6.0743 -1.6971 -0.8754 36 1 8.0961 -0.2621 -0.8828 37 1 8.0963 -0.2531 0.8971 38 1 11.5972 -0.9737 0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026483260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -204.756763 kcal Electronic energy + Delta-G solvation = -25428.002981 eV Core-core repulsion = 21361.922868 eV Total energy + Delta-G solvation = -4066.080112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.99546 -40.76873 -38.73803 -38.24423 -37.62917 -36.91823 -35.45482 -34.01191 -33.13797 -32.10084 -31.77104 -28.49022 -27.28541 -25.55033 -23.88172 -23.18580 -22.34095 -20.49666 -19.81267 -19.09258 -18.76713 -18.33309 -18.17891 -17.71951 -17.62926 -17.08340 -16.89194 -16.84571 -16.48563 -16.13527 -15.63187 -15.12970 -14.94996 -14.45003 -14.37830 -14.35530 -13.98455 -13.33170 -13.20932 -13.18101 -13.14018 -13.07834 -13.01082 -12.63264 -12.58679 -12.47358 -12.39221 -12.14415 -11.85466 -11.53496 -11.50623 -11.37552 -11.27719 -10.61151 -10.47470 -9.92499 -8.26498 -6.40433 -0.66785 -0.54868 -0.28825 1.27586 1.40269 1.44848 1.51876 1.62080 1.98299 2.13360 2.34135 2.40033 2.74387 3.07562 3.21393 3.50862 3.59119 3.80163 3.94511 4.19635 4.20925 4.23354 4.24952 4.34508 4.42184 4.54392 4.66072 4.68460 4.78274 4.83234 5.21705 5.29500 5.31799 5.45183 5.47593 5.72767 6.05366 6.07756 6.39027 6.65092 6.73071 7.29223 8.85966 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003237 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.977605 B = 8646.925770 C =10798.169972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.308 6.308 3 C 0.235 3.765 4 C -0.227 4.227 5 C 0.062 3.938 6 C -0.726 4.726 7 S 2.734 3.266 8 N -1.232 6.232 9 O -0.981 6.981 10 O -1.000 7.000 11 C 0.068 3.932 12 C -0.205 4.205 13 C 0.497 3.503 14 O -0.522 6.522 15 O -0.363 6.363 16 C 0.093 3.907 17 C 0.030 3.970 18 C -0.553 4.553 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.191 0.809 30 H 0.188 0.812 31 H 0.432 0.568 32 H 0.429 0.571 33 H 0.153 0.847 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.009 0.991 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.851 13.640 -4.526 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.218 6.218 3 C 0.185 3.815 4 C -0.246 4.246 5 C 0.043 3.957 6 C -0.813 4.813 7 S 2.821 3.179 8 N -0.911 5.911 9 O -0.970 6.970 10 O -0.989 6.989 11 C 0.048 3.952 12 C -0.208 4.208 13 C 0.344 3.656 14 O -0.413 6.413 15 O -0.280 6.280 16 C 0.020 3.980 17 C -0.007 4.007 18 C -0.590 4.590 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.565 5.565 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.133 0.867 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.208 0.792 30 H 0.205 0.795 31 H 0.265 0.735 32 H 0.259 0.741 33 H 0.171 0.829 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.524 13.595 -3.593 28.269 hybrid contribution 0.566 -1.535 -0.542 1.724 sum -23.958 12.060 -4.135 27.139 Atomic orbital electron populations 1.23697 0.74908 1.06418 1.03928 1.86391 1.24789 1.25890 1.84708 1.19518 0.90007 0.86579 0.85380 1.21731 1.02634 0.89890 1.10307 1.21399 0.91405 0.99811 0.83080 1.30569 1.05708 1.19771 1.25286 1.00424 0.72759 0.71946 0.72724 1.52735 1.92253 1.18583 1.27553 1.93557 1.63986 1.61660 1.77834 1.93626 1.41391 1.86083 1.77778 1.21174 1.01068 0.89451 0.83460 1.18655 0.90842 0.91571 1.19744 1.21336 0.81549 0.89731 0.73032 1.90815 1.73191 1.30545 1.46734 1.86555 1.19135 1.38685 1.83606 1.23202 0.91962 0.81787 1.01069 1.18995 0.87609 0.97266 0.96813 1.21332 0.92175 0.92677 1.52832 0.91653 1.25976 0.98621 1.00647 0.93989 1.70100 1.08626 1.27601 1.50156 0.85358 0.77050 0.78465 0.79310 1.18931 1.20402 1.19138 0.86743 0.89830 0.89463 0.79221 0.79501 0.73519 0.74129 0.82908 0.92288 0.91932 0.97245 0.97615 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -7.47 8.57 -68.67 -0.59 -8.06 16 3 C 0.24 5.48 6.70 22.86 0.15 5.63 16 4 C -0.23 -3.08 9.03 22.34 0.20 -2.88 16 5 C 0.06 0.81 9.50 22.30 0.21 1.02 16 6 C -0.73 -13.51 5.97 22.24 0.13 -13.38 16 7 S 2.73 49.09 6.28 -56.49 -0.35 48.73 16 8 N -1.23 -11.67 9.52 37.02 0.35 -11.32 16 9 O -0.98 -20.30 17.27 -128.00 -2.21 -22.51 16 10 O -1.00 -28.42 17.26 -128.00 -2.21 -30.62 16 11 C 0.07 1.76 9.08 22.53 0.20 1.97 16 12 C -0.21 -6.15 5.88 -20.02 -0.12 -6.27 16 13 C 0.50 19.49 7.89 70.24 0.55 20.05 16 14 O -0.52 -22.51 14.95 26.82 0.40 -22.11 16 15 O -0.36 -15.77 9.47 -56.62 -0.54 -16.31 16 16 C 0.09 4.41 5.41 71.98 0.39 4.80 16 17 C 0.03 1.69 5.35 29.85 0.16 1.85 16 18 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 19 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 22 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.55 7.67 -2.39 -0.02 0.53 16 28 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 29 H 0.19 0.91 6.30 -2.91 -0.02 0.89 16 30 H 0.19 1.14 7.60 -2.91 -0.02 1.12 16 31 H 0.43 2.33 8.96 -96.75 -0.87 1.47 16 32 H 0.43 2.64 8.96 -96.75 -0.87 1.78 16 33 H 0.15 4.32 7.15 -2.91 -0.02 4.30 16 34 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 35 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 36 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -86.59 347.72 0.26 -86.33 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -0.60 Total: 2.84 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.70 Total: -17.07 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.64 Total: -67.56 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -5.14 Total: -99.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.35 Total: 48.73 kcal Total: -86.59 0.26 -86.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026483260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.428 kcal (2) G-P(sol) polarization free energy of solvation -86.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds