Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99853 * 2 1 4 4 N 1.46508 * 109.47193 * 124.99985 * 3 2 1 5 5 S 1.65595 * 119.99876 * 165.00215 * 4 3 2 6 6 O 1.42105 * 106.40149 * 178.54167 * 5 4 3 7 7 O 1.42098 * 106.40317 * 311.46040 * 5 4 3 8 8 C 1.76204 * 107.21987 * 65.00402 * 5 4 3 9 9 C 1.37831 * 119.93861 * 114.72775 * 8 5 4 10 10 C 1.39721 * 119.86719 * 179.73484 * 9 8 5 11 11 C 1.47544 * 120.12604 * 180.29201 * 10 9 8 12 12 O 1.21528 * 119.99528 * 0.26352 * 11 10 9 13 13 O 1.34747 * 120.00181 * 180.26231 * 11 10 9 14 14 C 1.34855 * 117.00022 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99925 * 0.02562 * 14 13 11 16 16 C 1.38801 * 120.00324 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00513 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99697 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46614 * 90.00272 * 18 16 14 20 20 H 1.48502 * 109.47011 * 210.00299 * 18 16 14 21 21 H 1.48496 * 109.47344 * 330.00650 * 18 16 14 22 22 C 1.39760 * 119.74914 * 0.55332 * 10 9 8 23 23 C 1.37788 * 119.87049 * 359.71309 * 22 10 9 24 24 C 1.38653 * 119.93127 * 294.99639 * 8 5 4 25 25 F 1.35098 * 119.87938 * 0.02562 * 24 8 5 26 26 H 1.08007 * 119.99540 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00480 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47277 * 5.00345 * 3 2 1 30 30 H 1.08993 * 109.47815 * 245.00142 * 3 2 1 31 31 H 0.96997 * 120.00091 * 345.00187 * 4 3 2 32 32 H 1.07997 * 120.06219 * 359.97438 * 9 8 5 33 33 H 0.96995 * 120.00498 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.06426 * 179.69409 * 22 10 9 35 35 H 1.07998 * 119.93445 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 16 4.2064 2.4586 1.1798 6 8 4.9022 2.2471 2.4006 7 8 4.8392 2.4218 -0.0920 8 6 3.4430 4.0414 1.3101 9 6 3.6225 4.8002 2.4466 10 6 3.0210 6.0574 2.5461 11 6 3.2146 6.8772 3.7575 12 8 3.9022 6.4612 4.6691 13 8 2.6290 8.0870 3.8529 14 6 2.8461 8.7845 4.9865 15 1 3.4663 8.3679 5.7665 16 6 2.2726 10.0377 5.1509 17 7 2.4845 10.7177 6.2554 18 14 1.2005 10.7585 3.8015 19 1 -0.2118 10.3571 4.0240 20 1 1.3038 12.2397 3.8254 21 1 1.6572 10.2516 2.4826 22 6 2.2308 6.5331 1.4961 23 6 2.0539 5.7633 0.3670 24 6 2.6583 4.5186 0.2714 25 9 2.4809 3.7681 -0.8379 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 2.8994 0.6898 1.8523 32 1 4.2300 4.4253 3.2570 33 1 2.0834 11.5933 6.3704 34 1 1.7594 7.5020 1.5697 35 1 1.4432 6.1298 -0.4448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031222955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -138.846264 kcal Electronic energy + Delta-G solvation = -25495.657895 eV Core-core repulsion = 21308.975572 eV Total energy + Delta-G solvation = -4186.682324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.56145 -39.88087 -38.41082 -37.42961 -36.68069 -36.04184 -35.52252 -32.74258 -32.56786 -31.73724 -30.97627 -26.06413 -25.98996 -23.88354 -23.59453 -20.90836 -20.62817 -19.57893 -18.61938 -18.16839 -17.73924 -17.57739 -16.97528 -16.83934 -16.04797 -15.89501 -15.39355 -15.21142 -14.94598 -14.79591 -14.41740 -14.24781 -13.95200 -13.66628 -13.21886 -13.14941 -12.68591 -12.63019 -12.50771 -12.30857 -12.25885 -12.18427 -11.91381 -11.45769 -11.38777 -11.03782 -10.70182 -10.57351 -10.25779 -9.89913 -9.80694 -9.66099 -9.46085 -9.03761 -8.86680 -6.57662 -4.28320 0.07294 0.35871 0.76145 1.76163 2.60147 2.87898 3.08425 3.10441 3.19409 3.41223 3.66551 3.73550 3.80670 4.06106 4.16000 4.36752 4.50428 4.66468 4.85437 4.94953 5.00191 5.04576 5.05809 5.15511 5.38795 5.40991 5.58263 5.65070 5.74446 6.04615 6.14809 6.23022 6.23864 6.50061 6.64033 7.50958 7.83517 8.42001 8.78279 9.43726 10.49582 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.003309 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.443374 B = 8459.704818 C = 9005.825229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.167 4.167 3 C 0.139 3.861 4 N -1.112 6.112 5 S 2.701 3.299 6 O -0.946 6.946 7 O -0.946 6.946 8 C -0.721 4.721 9 C 0.054 3.946 10 C -0.110 4.110 11 C 0.439 3.561 12 O -0.529 6.529 13 O -0.239 6.239 14 C -0.372 4.372 15 H 0.114 0.886 16 C 0.066 3.934 17 N -0.860 5.860 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.259 1.259 22 C 0.000 4.000 23 C -0.175 4.175 24 C 0.194 3.806 25 F -0.123 7.123 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.422 0.578 32 H 0.167 0.833 33 H 0.284 0.716 34 H 0.156 0.844 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -17.021 -15.514 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.014 3.986 4 N -0.873 5.873 5 S 2.788 3.212 6 O -0.936 6.936 7 O -0.935 6.935 8 C -0.807 4.807 9 C 0.034 3.966 10 C -0.112 4.112 11 C 0.286 3.714 12 O -0.425 6.425 13 O -0.147 6.147 14 C -0.447 4.447 15 H 0.132 0.868 16 C -0.139 4.139 17 N -0.498 5.498 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.183 1.183 22 C -0.019 4.019 23 C -0.194 4.194 24 C 0.173 3.827 25 F -0.101 7.101 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.257 0.743 32 H 0.184 0.816 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.742 -16.920 -15.381 23.353 hybrid contribution -1.229 0.663 -0.240 1.417 sum -5.971 -16.257 -15.622 23.323 Atomic orbital electron populations 1.23998 0.95784 1.02488 0.98483 1.22962 0.96047 0.97998 1.01667 1.20665 0.92120 0.96713 0.89130 1.55524 1.50449 1.49040 1.32265 1.01836 0.72711 0.72717 0.73928 1.93632 1.69593 1.84734 1.45686 1.93618 1.71570 1.86068 1.42273 1.30834 1.20316 1.27077 1.02503 1.20939 0.91047 0.90605 0.93995 1.19560 1.01583 0.95203 0.94888 1.20131 0.82255 0.82195 0.86791 1.90724 1.39649 1.72039 1.40070 1.83491 1.62490 1.27027 1.41703 1.20772 1.32030 0.99104 0.92838 0.86807 1.24607 0.97087 0.94889 0.97357 1.69580 1.41961 1.13252 1.24988 0.86211 0.80455 0.78266 0.81999 1.19574 1.20413 1.18313 1.21768 0.91099 0.99054 0.89949 1.21184 1.03943 0.93516 1.00762 1.17189 0.94198 0.89936 0.81352 1.91571 1.93193 1.75017 1.50339 0.87848 0.88115 0.86446 0.91143 0.88822 0.74315 0.81552 0.90592 0.82617 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.32 29.02 0.42 -0.57 16 2 C -0.17 -1.09 9.66 -36.02 -0.35 -1.44 16 3 C 0.14 1.13 4.99 -5.19 -0.03 1.11 16 4 N -1.11 -10.00 5.99 -11.65 -0.07 -10.07 16 5 S 2.70 34.02 5.48 -107.50 -0.59 33.43 16 6 O -0.95 -14.30 16.96 -57.17 -0.97 -15.27 16 7 O -0.95 -13.95 16.89 -57.17 -0.97 -14.92 16 8 C -0.72 -9.83 5.89 -39.58 -0.23 -10.06 16 9 C 0.05 0.86 9.09 -39.18 -0.36 0.51 16 10 C -0.11 -1.95 5.87 -104.98 -0.62 -2.57 16 11 C 0.44 10.14 7.83 34.53 0.27 10.41 16 12 O -0.53 -13.82 15.59 -19.29 -0.30 -14.12 16 13 O -0.24 -5.95 7.82 -21.68 -0.17 -6.12 16 14 C -0.37 -10.56 10.11 30.94 0.31 -10.24 16 15 H 0.11 3.58 7.09 -52.49 -0.37 3.20 16 16 C 0.07 1.80 5.50 -17.52 -0.10 1.70 16 17 N -0.86 -24.28 13.96 55.49 0.77 -23.51 16 18 Si 0.91 19.87 28.62 -169.99 -4.86 15.00 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C 0.00 0.00 9.61 -39.18 -0.38 -0.38 16 23 C -0.17 -2.04 10.01 -39.58 -0.40 -2.44 16 24 C 0.19 2.40 6.81 -39.26 -0.27 2.13 16 25 F -0.12 -1.35 12.89 2.25 0.03 -1.33 16 26 H 0.10 0.47 8.06 -52.48 -0.42 0.04 16 27 H 0.10 0.56 7.84 -52.49 -0.41 0.14 16 28 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 29 H 0.07 0.54 6.39 -51.93 -0.33 0.21 16 30 H 0.09 0.79 7.24 -51.93 -0.38 0.41 16 31 H 0.42 2.94 8.64 -34.47 -0.30 2.64 16 32 H 0.17 2.75 6.91 -52.49 -0.36 2.39 16 33 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.16 2.13 7.61 -52.49 -0.40 1.73 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -34.10 329.40 -6.83 -40.93 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.95 Total: 2.84 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.72 Total: -11.84 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.70 Total: -33.58 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -2.41 Total: -50.43 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.03 Total: -1.33 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.86 Total: 15.00 kcal Atomic # 16 Polarization: 34.02 SS G_CDS: -0.59 Total: 33.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.10 -6.83 -40.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031222955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.918 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds