Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99853 * 2 1 4 4 N 1.46508 * 109.47193 * 124.99985 * 3 2 1 5 5 S 1.65595 * 119.99876 * 165.00215 * 4 3 2 6 6 O 1.42105 * 106.40149 * 178.54167 * 5 4 3 7 7 O 1.42098 * 106.40317 * 311.46040 * 5 4 3 8 8 C 1.76204 * 107.21987 * 65.00402 * 5 4 3 9 9 C 1.37831 * 119.93861 * 114.72775 * 8 5 4 10 10 C 1.39721 * 119.86719 * 179.73484 * 9 8 5 11 11 C 1.47544 * 120.12604 * 180.29201 * 10 9 8 12 12 O 1.21528 * 119.99528 * 0.26352 * 11 10 9 13 13 O 1.34747 * 120.00181 * 180.26231 * 11 10 9 14 14 C 1.34855 * 117.00022 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99925 * 0.02562 * 14 13 11 16 16 C 1.38801 * 120.00324 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00513 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99697 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46614 * 90.00272 * 18 16 14 20 20 H 1.48502 * 109.47011 * 210.00299 * 18 16 14 21 21 H 1.48496 * 109.47344 * 330.00650 * 18 16 14 22 22 C 1.39760 * 119.74914 * 0.55332 * 10 9 8 23 23 C 1.37788 * 119.87049 * 359.71309 * 22 10 9 24 24 C 1.38653 * 119.93127 * 294.99639 * 8 5 4 25 25 F 1.35098 * 119.87938 * 0.02562 * 24 8 5 26 26 H 1.08007 * 119.99540 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00480 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47277 * 5.00345 * 3 2 1 30 30 H 1.08993 * 109.47815 * 245.00142 * 3 2 1 31 31 H 0.96997 * 120.00091 * 345.00187 * 4 3 2 32 32 H 1.07997 * 120.06219 * 359.97438 * 9 8 5 33 33 H 0.96995 * 120.00498 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.06426 * 179.69409 * 22 10 9 35 35 H 1.07998 * 119.93445 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 16 4.2064 2.4586 1.1798 6 8 4.9022 2.2471 2.4006 7 8 4.8392 2.4218 -0.0920 8 6 3.4430 4.0414 1.3101 9 6 3.6225 4.8002 2.4466 10 6 3.0210 6.0574 2.5461 11 6 3.2146 6.8772 3.7575 12 8 3.9022 6.4612 4.6691 13 8 2.6290 8.0870 3.8529 14 6 2.8461 8.7845 4.9865 15 1 3.4663 8.3679 5.7665 16 6 2.2726 10.0377 5.1509 17 7 2.4845 10.7177 6.2554 18 14 1.2005 10.7585 3.8015 19 1 -0.2118 10.3571 4.0240 20 1 1.3038 12.2397 3.8254 21 1 1.6572 10.2516 2.4826 22 6 2.2308 6.5331 1.4961 23 6 2.0539 5.7633 0.3670 24 6 2.6583 4.5186 0.2714 25 9 2.4809 3.7681 -0.8379 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 2.8994 0.6898 1.8523 32 1 4.2300 4.4253 3.2570 33 1 2.0834 11.5933 6.3704 34 1 1.7594 7.5020 1.5697 35 1 1.4432 6.1298 -0.4448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031222955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -164.387792 kcal Electronic energy + Delta-G solvation = -25496.765459 eV Core-core repulsion = 21308.975572 eV Total energy + Delta-G solvation = -4187.789887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.56796 -41.56163 -39.86265 -38.52812 -37.49417 -37.35599 -37.16283 -34.60058 -33.34524 -32.91035 -32.27342 -27.98226 -26.62927 -25.22573 -24.87218 -22.38986 -21.24001 -20.64494 -20.28683 -19.75177 -18.97501 -18.70562 -18.01178 -17.84892 -17.29096 -17.04958 -16.93406 -16.80336 -16.13648 -16.04540 -15.51521 -15.42996 -14.88187 -14.75464 -14.51471 -14.36470 -14.06711 -14.02591 -13.88278 -13.42599 -13.34165 -13.29258 -13.25949 -13.04347 -12.47516 -12.34662 -12.15125 -11.92260 -11.86404 -11.40064 -10.95165 -10.88775 -10.84909 -10.27619 -10.23857 -8.60360 -6.46931 -0.97666 -0.80346 -0.42672 1.17693 1.26765 1.33785 1.45749 1.54336 1.93011 2.06223 2.22438 2.25716 2.46114 2.57896 2.89896 3.08568 3.40869 3.72462 3.74861 3.80720 3.90638 4.14028 4.29392 4.39112 4.40202 4.53196 4.60773 4.73286 4.80286 4.93707 5.10185 5.32692 5.40450 5.71168 5.74907 5.80823 6.00328 6.39214 6.72467 7.41347 8.51938 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.003309 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.443374 B = 8459.704818 C = 9005.825229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C 0.129 3.871 4 N -1.097 6.097 5 S 2.717 3.283 6 O -0.977 6.977 7 O -0.965 6.965 8 C -0.724 4.724 9 C 0.050 3.950 10 C -0.140 4.140 11 C 0.447 3.553 12 O -0.570 6.570 13 O -0.237 6.237 14 C -0.409 4.409 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.911 5.911 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.267 1.267 21 H -0.238 1.238 22 C 0.013 3.987 23 C -0.153 4.153 24 C 0.214 3.786 25 F -0.107 7.107 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.432 0.568 32 H 0.150 0.850 33 H 0.292 0.708 34 H 0.170 0.830 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -17.803 -19.675 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.005 3.995 4 N -0.862 5.862 5 S 2.804 3.196 6 O -0.967 6.967 7 O -0.954 6.954 8 C -0.809 4.809 9 C 0.030 3.970 10 C -0.142 4.142 11 C 0.295 3.705 12 O -0.467 6.467 13 O -0.146 6.146 14 C -0.485 4.485 15 H 0.076 0.924 16 C -0.184 4.184 17 N -0.549 5.549 18 Si 0.802 3.198 19 H -0.179 1.179 20 H -0.192 1.192 21 H -0.160 1.160 22 C -0.006 4.006 23 C -0.172 4.172 24 C 0.193 3.807 25 F -0.085 7.085 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.270 0.730 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.416 -17.731 -19.535 27.405 hybrid contribution -0.364 0.600 0.935 1.170 sum -7.780 -17.131 -18.600 26.456 Atomic orbital electron populations 1.24199 0.95579 1.03412 0.96801 1.22934 0.96305 0.97494 1.03082 1.20886 0.92066 0.98180 0.88396 1.55244 1.49941 1.47882 1.33118 1.01204 0.72951 0.72643 0.72799 1.93592 1.71089 1.85117 1.46902 1.93593 1.72580 1.86365 1.42904 1.30876 1.20630 1.27315 1.02069 1.20769 0.91088 0.90456 0.94683 1.19272 1.05370 0.95476 0.94131 1.21279 0.79852 0.81555 0.87767 1.90696 1.41036 1.72724 1.42255 1.83481 1.63346 1.27664 1.40099 1.20373 1.33874 1.00773 0.93461 0.92437 1.25684 0.98011 0.94407 1.00306 1.69684 1.43582 1.14141 1.27505 0.85088 0.78400 0.77632 0.78711 1.17910 1.19203 1.16048 1.21925 0.89531 0.99759 0.89338 1.21586 1.02893 0.92108 1.00599 1.17320 0.92476 0.90072 0.80873 1.91630 1.92790 1.74701 1.49372 0.86473 0.87727 0.85614 0.90316 0.89002 0.73002 0.83218 0.89750 0.81256 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 14.32 67.79 0.97 -0.38 16 2 C -0.18 -1.82 9.66 25.65 0.25 -1.57 16 3 C 0.13 1.73 4.99 85.63 0.43 2.16 16 4 N -1.10 -17.60 5.99 -190.77 -1.14 -18.74 16 5 S 2.72 65.46 5.48 -56.49 -0.31 65.16 16 6 O -0.98 -29.80 16.96 -128.00 -2.17 -31.97 16 7 O -0.96 -26.95 16.89 -128.00 -2.16 -29.12 16 8 C -0.72 -18.43 5.89 22.27 0.13 -18.30 16 9 C 0.05 1.59 9.09 22.53 0.20 1.80 16 10 C -0.14 -4.91 5.87 -20.10 -0.12 -5.03 16 11 C 0.45 21.47 7.83 70.28 0.55 22.02 16 12 O -0.57 -31.98 15.59 19.75 0.31 -31.67 16 13 O -0.24 -12.13 7.82 11.18 0.09 -12.04 16 14 C -0.41 -24.57 10.11 67.95 0.69 -23.89 16 15 H 0.06 3.98 7.09 -2.91 -0.02 3.96 16 16 C 0.02 0.94 5.50 84.89 0.47 1.41 16 17 N -0.91 -53.57 13.96 21.63 0.30 -53.27 16 18 Si 0.98 40.18 28.62 68.60 1.96 42.14 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.24 -8.78 7.11 99.48 0.71 -8.08 16 22 C 0.01 0.32 9.61 22.53 0.22 0.54 16 23 C -0.15 -2.77 10.01 22.27 0.22 -2.55 16 24 C 0.21 4.42 6.81 22.48 0.15 4.57 16 25 F -0.11 -1.86 12.89 44.97 0.58 -1.28 16 26 H 0.12 0.67 8.06 -2.91 -0.02 0.64 16 27 H 0.10 0.79 7.84 -2.91 -0.02 0.77 16 28 H 0.13 1.06 8.06 -2.91 -0.02 1.03 16 29 H 0.08 0.91 6.39 -2.38 -0.02 0.90 16 30 H 0.09 1.28 7.24 -2.39 -0.02 1.26 16 31 H 0.43 5.28 8.64 -96.75 -0.84 4.44 16 32 H 0.15 5.26 6.91 -2.91 -0.02 5.24 16 33 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.17 3.92 7.61 -2.91 -0.02 3.90 16 35 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -80.14 329.40 1.94 -78.20 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.33 Total: 11.81 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 4.16 Total: -19.21 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -0.84 Total: -72.01 kcal Atomic # 8 Polarization: -100.86 SS G_CDS: -3.94 Total: -104.79 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.58 Total: -1.28 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.96 Total: 42.14 kcal Atomic # 16 Polarization: 65.46 SS G_CDS: -0.31 Total: 65.16 kcal Total: -80.14 1.94 -78.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031222955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.189 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds