Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28169 * 124.76587 * 2 1 4 4 C 1.34201 * 118.07113 * 179.75470 * 3 2 1 5 5 C 1.40229 * 112.92050 * 0.46282 * 4 3 2 6 6 N 1.33099 * 119.76378 * 179.77547 * 5 4 3 7 7 C 1.32281 * 120.90246 * 359.75306 * 6 5 4 8 8 S 1.76201 * 119.09045 * 179.97438 * 7 6 5 9 9 C 1.76208 * 99.99848 * 0.02562 * 8 7 6 10 10 H 1.07996 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.38748 * 119.99460 * 180.02562 * 9 8 7 12 12 N 1.31585 * 120.00647 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99561 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47261 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47345 * 119.99576 * 13 11 9 16 16 H 1.48502 * 109.46924 * 239.99860 * 13 11 9 17 17 N 1.32601 * 121.82120 * 0.02562 * 7 6 5 18 18 C 1.32515 * 121.32872 * 359.97438 * 17 7 6 19 19 C 1.48128 * 120.45479 * 179.97438 * 18 17 7 20 20 C 1.39462 * 120.13756 * 325.00585 * 19 18 17 21 21 C 1.37985 * 119.86790 * 180.02562 * 20 19 18 22 22 C 1.38339 * 120.13194 * 0.02562 * 21 20 19 23 23 C 1.38340 * 120.27340 * 359.97438 * 22 21 20 24 24 C 1.37993 * 120.13020 * 0.02635 * 23 22 21 25 25 S 1.75863 * 124.77131 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47412 * 300.00142 * 1 2 3 28 28 H 1.09000 * 109.47176 * 60.00531 * 1 2 3 29 29 H 0.96998 * 120.00276 * 180.02562 * 12 11 9 30 30 H 1.08002 * 120.06164 * 0.29471 * 20 19 18 31 31 H 1.08001 * 119.93384 * 179.97438 * 21 20 19 32 32 H 1.08006 * 119.86489 * 180.02562 * 22 21 20 33 33 H 1.07995 * 119.93577 * 180.02562 * 23 22 21 34 34 H 1.08001 * 120.06291 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2379 1.0529 0.0000 4 6 3.5707 0.8965 0.0051 5 6 3.9626 -0.4500 -0.0007 6 7 5.2566 -0.7615 -0.0012 7 6 6.1828 0.1830 -0.0012 8 16 7.8820 -0.2834 -0.0012 9 6 7.7177 -2.0378 -0.0019 10 1 6.7361 -2.4882 -0.0018 11 6 8.8494 -2.8405 -0.0016 12 7 10.0454 -2.2917 -0.0012 13 14 8.6753 -4.7004 -0.0031 14 1 7.2351 -5.0627 -0.0039 15 1 9.3270 -5.2576 -1.2155 16 1 9.3251 -5.2593 1.2095 17 7 5.8678 1.4711 -0.0002 18 6 4.6046 1.8715 0.0003 19 6 4.2748 3.3156 0.0020 20 6 5.0822 4.2174 0.6947 21 6 4.7695 5.5614 0.6929 22 6 3.6573 6.0147 0.0064 23 6 2.8525 5.1251 -0.6826 24 6 3.1549 3.7787 -0.6883 25 16 2.5100 -1.4446 -0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 10.8365 -2.8529 -0.0013 30 1 5.9529 3.8651 1.2277 31 1 5.3937 6.2606 1.2293 32 1 3.4168 7.0676 0.0075 33 1 1.9858 5.4850 -1.2171 34 1 2.5257 3.0851 -1.2262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035682723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 92.354104 kcal Electronic energy + Delta-G solvation = -21626.931634 eV Core-core repulsion = 18356.089757 eV Total energy + Delta-G solvation = -3270.841877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.035 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73929 -38.76151 -37.62928 -33.72347 -32.95168 -31.98055 -30.82552 -30.38703 -28.16509 -26.05325 -24.84928 -23.99477 -22.20248 -21.93092 -20.83654 -18.73122 -17.79490 -17.62596 -16.78572 -16.23984 -15.36782 -15.17763 -15.10258 -15.03042 -14.45183 -13.81493 -13.60412 -13.57160 -13.28517 -13.09994 -12.71499 -12.59984 -12.18167 -12.13932 -11.53917 -11.35022 -11.31420 -11.16598 -11.08263 -10.87896 -10.67439 -10.24153 -9.67836 -9.59541 -9.13076 -9.09873 -8.84228 -8.65271 -8.49312 -8.25842 -7.04266 -6.73472 -4.40308 0.34338 1.02197 1.28946 1.51358 1.82374 1.93500 2.54081 2.55239 3.04382 3.10137 3.19842 3.79345 3.80166 4.00726 4.17734 4.27165 4.74592 4.78971 4.88308 4.95176 5.01236 5.12395 5.18450 5.31102 5.41284 5.46142 5.56842 5.59344 5.73292 5.89774 6.06757 6.14524 6.31872 6.54856 6.61239 6.66402 7.01759 7.28382 7.33343 7.82505 8.17417 8.46912 8.78542 10.32699 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.004272 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.760333 B = 6553.177905 C = 8709.685057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.075 3.925 3 N -0.425 5.425 4 C -0.079 4.079 5 C 0.110 3.890 6 N -0.493 5.493 7 C 0.269 3.731 8 S 0.232 5.768 9 C -0.547 4.547 10 H 0.114 0.886 11 C 0.077 3.923 12 N -0.862 5.862 13 Si 0.934 3.066 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.275 1.275 17 N -0.501 5.501 18 C 0.298 3.702 19 C -0.044 4.044 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.068 4.068 25 S 0.072 5.928 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.280 0.720 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 9.301 -0.007 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.213 4.213 3 N -0.138 5.138 4 C -0.212 4.212 5 C -0.155 4.155 6 N -0.217 5.217 7 C -0.100 4.100 8 S 0.484 5.516 9 C -0.695 4.695 10 H 0.132 0.868 11 C -0.134 4.134 12 N -0.494 5.494 13 Si 0.759 3.241 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.200 1.200 17 N -0.218 5.218 18 C 0.134 3.866 19 C -0.046 4.046 20 C -0.093 4.093 21 C -0.149 4.149 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.088 4.088 25 S 0.319 5.681 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.050 8.898 -0.009 15.795 hybrid contribution -1.254 -1.104 0.023 1.671 sum -14.305 7.794 0.014 16.290 Atomic orbital electron populations 1.20364 0.84832 1.03414 1.04116 1.27303 1.00232 0.88920 1.04881 1.65702 1.03468 1.31145 1.13502 1.20020 0.90193 0.93565 1.17433 1.24666 0.98101 0.93731 0.98972 1.68371 0.97294 1.36135 1.19851 1.26292 1.03184 0.85526 0.95045 1.83694 0.86263 1.06737 1.74926 1.23792 0.98152 0.90402 1.57176 0.86804 1.25233 0.93937 1.01435 0.92788 1.69935 0.98098 1.37387 1.44027 0.85836 0.79356 0.80663 0.78269 1.18678 1.20002 1.20009 1.68418 1.17675 1.18039 1.17708 1.19773 0.86332 0.91772 0.88754 1.18353 0.96495 0.89329 1.00410 1.21323 0.98071 0.92575 0.97306 1.21066 0.97927 0.95329 1.00624 1.21241 0.95054 0.99501 0.96918 1.21027 1.00204 0.92999 1.00705 1.21301 0.94780 0.95664 0.97051 1.84862 0.95670 1.10328 1.77218 0.90252 0.89549 0.89546 0.91043 0.85096 0.85763 0.86141 0.85875 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.49 36.01 0.38 -0.21 16 2 C 0.08 1.07 7.54 -13.81 -0.10 0.96 16 3 N -0.43 -7.16 8.85 -7.50 -0.07 -7.23 16 4 C -0.08 -1.57 6.57 -84.60 -0.56 -2.12 16 5 C 0.11 2.34 7.75 -16.25 -0.13 2.21 16 6 N -0.49 -11.95 8.46 -12.15 -0.10 -12.05 16 7 C 0.27 6.51 7.84 -91.04 -0.71 5.79 16 8 S 0.23 5.86 21.83 -107.50 -2.35 3.52 16 9 C -0.55 -14.78 9.24 30.92 0.29 -14.50 16 10 H 0.11 3.15 6.50 -52.49 -0.34 2.81 16 11 C 0.08 2.03 5.49 -17.47 -0.10 1.93 16 12 N -0.86 -23.13 13.22 55.49 0.73 -22.39 16 13 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16 14 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 N -0.50 -11.11 10.00 -9.59 -0.10 -11.21 16 18 C 0.30 5.98 6.56 -82.03 -0.54 5.44 16 19 C -0.04 -0.75 5.75 -104.92 -0.60 -1.35 16 20 C -0.07 -1.10 9.60 -39.22 -0.38 -1.47 16 21 C -0.13 -1.57 10.03 -39.64 -0.40 -1.97 16 22 C -0.11 -1.18 10.04 -39.51 -0.40 -1.58 16 23 C -0.13 -1.53 10.03 -39.63 -0.40 -1.93 16 24 C -0.07 -0.99 9.08 -39.21 -0.36 -1.35 16 25 S 0.07 1.18 23.36 -107.50 -2.51 -1.33 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.13 1.99 7.98 -52.49 -0.42 1.57 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.92 6.80 -52.49 -0.36 1.56 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -30.44 330.81 -11.21 -41.66 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.79 Total: -1.10 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.00 Total: -10.14 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.47 Total: -52.89 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -4.86 Total: 2.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.44 -11.21 -41.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035682723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.013 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds