Wall clock time and date at job start Tue Mar 31 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00199 * 2 1 4 4 C 1.38717 * 120.15289 * 0.02562 * 3 2 1 5 5 C 1.38048 * 120.09045 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.40098 * 359.97438 * 5 4 3 7 7 S 1.76205 * 119.84398 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40326 * 203.53796 * 7 6 5 9 9 O 1.42101 * 106.40084 * 336.45899 * 7 6 5 10 10 N 1.65595 * 107.21838 * 89.99871 * 7 6 5 11 11 C 1.46503 * 120.00043 * 90.00085 * 10 7 6 12 12 C 1.46500 * 120.00021 * 270.00104 * 10 7 6 13 13 C 1.50704 * 109.47080 * 95.00226 * 12 10 7 14 14 H 1.08001 * 120.00024 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99951 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00026 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47373 * 59.99757 * 17 15 13 19 19 H 1.48504 * 109.47438 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47217 * 300.00142 * 17 15 13 21 21 C 1.37765 * 120.31277 * 359.76203 * 6 5 4 22 22 C 1.39764 * 119.89756 * 0.51333 * 21 6 5 23 23 C 1.47406 * 120.19600 * 179.74246 * 22 21 6 24 24 O 1.21507 * 120.00179 * 179.45254 * 23 22 21 25 25 O 1.34754 * 120.00035 * 359.72259 * 23 22 21 26 26 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47267 * 299.99941 * 1 2 3 28 28 H 1.08998 * 109.47177 * 60.00520 * 1 2 3 29 29 H 1.08001 * 119.95195 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.79789 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46787 * 90.00026 * 11 10 7 32 32 H 1.08997 * 109.46953 * 210.00108 * 11 10 7 33 33 H 1.09002 * 109.47109 * 329.99749 * 11 10 7 34 34 H 1.09003 * 109.47069 * 215.00076 * 12 10 7 35 35 H 1.08994 * 109.47533 * 335.00049 * 12 10 7 36 36 H 0.97000 * 120.00327 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.05006 * 180.27819 * 21 6 5 38 38 H 0.96692 * 117.00027 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6839 0.0016 7 16 4.0902 5.2607 0.0030 8 8 5.3879 5.0624 -0.5411 9 8 3.1511 6.1779 -0.5412 10 7 4.3084 5.6983 1.5851 11 6 5.5403 5.3256 2.2850 12 6 3.2696 6.4581 2.2849 13 6 2.3794 5.5092 3.0453 14 1 2.5683 4.4464 3.0104 15 6 1.3231 5.9977 3.7847 16 7 1.0928 7.2918 3.8268 17 14 0.2193 4.8215 4.7267 18 1 1.0301 4.0660 5.7151 19 1 -0.8344 5.5915 5.4352 20 1 -0.4157 3.8716 3.7780 21 6 4.0672 2.5371 0.0066 22 6 3.4446 1.2858 0.0002 23 6 4.2550 0.0545 -0.0003 24 8 3.7101 -1.0315 0.0042 25 8 5.6003 0.1333 -0.0002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2138 2.3195 0.0005 30 1 1.3302 4.5076 0.0011 31 1 6.2840 6.1119 2.1551 32 1 5.3300 5.1962 3.3466 33 1 5.9234 4.3916 1.8739 34 1 3.7360 7.1553 2.9809 35 1 2.6741 7.0125 1.5597 36 1 0.3499 7.6356 4.3473 37 1 5.1451 2.6049 0.0115 38 1 6.0889 -0.7011 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037311100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:49 Heat of formation + Delta-G solvation = -166.932727 kcal Electronic energy + Delta-G solvation = -26880.603016 eV Core-core repulsion = 22816.163077 eV Total energy + Delta-G solvation = -4064.439939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79353 -39.44855 -37.52892 -36.74466 -36.00515 -35.57010 -35.29755 -32.56144 -31.69064 -30.53318 -27.85807 -27.62794 -25.14310 -24.76479 -22.72832 -22.31377 -21.68718 -18.74868 -18.31314 -17.99830 -17.35189 -16.80616 -16.48975 -16.35402 -16.12600 -15.89980 -15.38399 -15.31850 -14.64997 -14.51085 -13.92244 -13.64266 -13.36984 -13.21594 -13.01622 -12.91525 -12.38951 -12.25170 -12.20969 -11.76277 -11.59866 -11.54964 -11.43224 -11.39123 -11.23188 -11.18711 -10.88528 -10.76973 -10.56999 -10.39921 -10.12598 -9.86214 -9.23138 -8.73312 -8.56419 -8.10042 -6.18498 -4.25623 0.63044 0.87995 1.09877 2.47436 2.93510 2.95736 3.18499 3.25653 3.26555 3.39882 3.70765 4.28321 4.29581 4.50356 4.66888 4.81460 4.97096 5.01363 5.12292 5.15816 5.28416 5.32303 5.41308 5.53481 5.59913 5.78910 6.04584 6.06277 6.10317 6.23484 6.42575 6.47897 6.51496 7.05519 7.25283 7.34143 7.53722 7.78222 7.90048 8.06767 8.79587 9.40908 10.89275 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.005843 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.069876 B = 4790.724063 C = 6281.589631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.283 6.283 3 C 0.233 3.767 4 C -0.243 4.243 5 C 0.078 3.922 6 C -0.716 4.716 7 S 2.695 3.305 8 O -0.975 6.975 9 O -0.955 6.955 10 N -0.985 5.985 11 C 0.102 3.898 12 C 0.242 3.758 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.073 3.927 22 C -0.193 4.193 23 C 0.532 3.468 24 O -0.503 6.503 25 O -0.513 6.513 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.266 0.734 37 H 0.157 0.843 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -11.281 -6.565 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.193 6.193 3 C 0.184 3.816 4 C -0.262 4.262 5 C 0.059 3.941 6 C -0.801 4.801 7 S 2.783 3.217 8 O -0.965 6.965 9 O -0.945 6.945 10 N -0.825 5.825 11 C -0.044 4.044 12 C 0.120 3.880 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.054 3.946 22 C -0.196 4.196 23 C 0.376 3.624 24 O -0.392 6.392 25 O -0.325 6.325 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.175 0.825 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.839 -10.805 -7.185 13.283 hybrid contribution -1.081 -1.761 1.139 2.359 sum 1.758 -12.566 -6.047 14.056 Atomic orbital electron populations 1.23278 0.77845 1.04581 1.02100 1.86310 1.21709 1.25588 1.85689 1.19196 0.90591 0.85096 0.86729 1.21330 1.00852 0.91618 1.12429 1.21046 0.92535 0.98593 0.81963 1.31239 1.05107 1.22533 1.21221 1.01872 0.73153 0.73416 0.73255 1.93523 1.38685 1.86780 1.77522 1.93554 1.63941 1.60071 1.76973 1.57307 1.26541 1.68044 1.30635 1.21310 0.85145 0.98904 0.99032 1.19304 0.84388 0.91172 0.93140 1.21531 1.12498 0.93918 1.30431 0.92029 1.24918 0.97316 0.95047 0.96344 1.69912 1.30151 1.11770 1.40677 0.86689 0.80368 0.80934 0.80238 1.20153 1.21069 1.20204 1.21053 1.00438 0.89130 0.84000 1.18317 0.89535 0.92028 1.19727 1.20439 0.80519 0.88805 0.72617 1.90916 1.72786 1.29538 1.45922 1.84578 1.19871 1.41866 1.86230 0.87693 0.91824 0.91980 0.83655 0.82643 0.93227 0.90561 0.92599 0.93892 0.92728 0.92423 0.82505 0.72912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -4.08 8.57 -40.50 -0.35 -4.43 16 3 C 0.23 3.57 6.70 -38.67 -0.26 3.31 16 4 C -0.24 -3.56 9.03 -39.47 -0.36 -3.92 16 5 C 0.08 1.29 9.50 -39.53 -0.38 0.92 16 6 C -0.72 -12.27 5.97 -39.64 -0.24 -12.51 16 7 S 2.70 50.95 5.64 -107.50 -0.61 50.34 16 8 O -0.97 -18.61 16.34 -57.17 -0.93 -19.54 16 9 O -0.95 -20.48 15.82 -57.17 -0.90 -21.39 16 10 N -0.99 -19.33 3.17 -123.05 -0.39 -19.72 16 11 C 0.10 1.66 10.31 59.85 0.62 2.28 16 12 C 0.24 5.69 5.41 -5.19 -0.03 5.66 16 13 C -0.54 -13.62 9.38 -34.44 -0.32 -13.95 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 17 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.07 1.14 9.08 -39.18 -0.36 0.79 16 22 C -0.19 -3.03 5.88 -104.86 -0.62 -3.64 16 23 C 0.53 7.81 8.26 34.46 0.28 8.10 16 24 O -0.50 -8.44 15.95 -26.59 -0.42 -8.86 16 25 O -0.51 -5.71 12.68 -40.64 -0.52 -6.22 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.15 1.70 6.30 -52.49 -0.33 1.37 16 30 H 0.16 2.58 7.60 -52.49 -0.40 2.18 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 34 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.16 2.19 7.16 -52.48 -0.38 1.81 16 38 H 0.41 2.50 9.11 45.56 0.42 2.91 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -33.60 345.90 -7.43 -41.03 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.48 Total: 2.32 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.76 Total: -10.16 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.35 Total: -43.33 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -3.13 Total: -60.45 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.61 Total: 50.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.60 -7.43 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037311100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.907 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds