Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 H 1.07995 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00170 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47403 * 89.99521 * 8 6 4 10 10 H 1.48501 * 109.47103 * 209.99684 * 8 6 4 11 11 H 1.48504 * 109.46927 * 329.99268 * 8 6 4 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 C 1.76205 * 107.21913 * 89.99801 * 12 2 1 16 16 C 1.38267 * 119.94156 * 269.72719 * 15 12 2 17 17 C 1.38149 * 120.05069 * 179.72811 * 16 15 12 18 18 C 1.38733 * 119.94430 * 0.56383 * 17 16 15 19 19 O 1.35902 * 120.05566 * 179.68524 * 18 17 16 20 20 C 1.42903 * 116.99812 * 0.02745 * 19 18 17 21 21 C 1.50693 * 109.46747 * 180.02562 * 20 19 18 22 22 O 1.20818 * 120.00405 * 359.97438 * 21 20 19 23 23 O 1.34230 * 119.99946 * 179.97438 * 21 20 19 24 24 C 1.38730 * 119.88672 * 359.70868 * 18 17 16 25 25 C 1.38140 * 119.94765 * 359.97438 * 24 18 17 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 0.97000 * 120.00256 * 180.02562 * 7 6 4 32 32 H 1.07999 * 119.97486 * 359.97438 * 16 15 12 33 33 H 1.07997 * 120.02374 * 180.25575 * 17 16 15 34 34 H 1.09005 * 109.46845 * 299.99747 * 20 19 18 35 35 H 1.08993 * 109.47287 * 59.99543 * 20 19 18 36 36 H 0.96700 * 117.00580 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.02555 * 179.97438 * 24 18 17 38 38 H 1.08001 * 119.97688 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.1259 3.3842 2.9016 8 14 3.7149 3.9396 0.2521 9 1 2.6965 4.8996 -0.2445 10 1 4.9097 4.6851 0.7231 11 1 4.1063 3.0207 -0.8468 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 6 2.5537 -1.8852 -1.6839 16 6 1.6210 -2.6656 -2.3417 17 6 1.8204 -3.0158 -3.6631 18 6 2.9633 -2.5936 -4.3265 19 8 3.1649 -2.9422 -5.6245 20 6 2.1581 -3.7448 -6.2445 21 6 2.5510 -4.0299 -7.6711 22 8 3.5866 -3.5905 -8.1119 23 8 1.7505 -4.7719 -8.4523 24 6 3.9004 -1.8154 -3.6625 25 6 3.6932 -1.4624 -2.3431 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 3.5894 4.2178 3.0783 32 1 0.7339 -2.9982 -1.8233 33 1 1.0895 -3.6219 -4.1777 34 1 2.0568 -4.6844 -5.7012 35 1 1.2076 -3.2117 -6.2286 36 1 2.0448 -4.9282 -9.3600 37 1 4.7912 -1.4859 -4.1767 38 1 4.4226 -0.8569 -1.8256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037466035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = -156.505085 kcal Electronic energy + Delta-G solvation = -25554.099059 eV Core-core repulsion = 21490.111296 eV Total energy + Delta-G solvation = -4063.987763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14549 -40.18803 -37.83072 -36.72758 -36.65358 -35.68247 -35.24630 -32.39408 -31.57248 -30.85336 -29.20051 -28.41755 -25.21858 -23.67735 -23.15959 -22.00288 -21.78175 -19.21299 -18.72926 -18.14712 -17.52634 -17.32132 -17.26799 -16.96693 -16.51661 -16.01509 -15.53000 -15.33829 -14.81699 -14.41205 -14.08991 -13.81329 -13.69504 -13.43413 -13.25957 -13.05353 -12.85217 -12.57076 -12.41876 -12.19340 -11.85265 -11.75488 -11.54701 -11.38736 -11.31654 -11.29629 -11.05475 -10.70121 -10.61320 -10.48472 -10.21639 -9.55866 -9.32159 -8.88816 -8.59798 -8.14054 -6.08224 -4.07765 0.64300 0.97590 1.06792 1.53202 1.67426 3.07026 3.19057 3.26021 3.33736 3.34748 3.68115 4.18875 4.29934 4.31342 4.38018 4.38993 4.51196 4.53137 4.79932 5.07056 5.18565 5.19478 5.34623 5.43245 5.66331 5.72320 5.83592 5.87526 5.95811 6.01809 6.19898 6.34775 6.39708 6.67506 6.82589 7.01531 7.23712 7.30875 7.56374 8.48294 8.96871 9.50389 11.05292 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.003046 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.074394 B = 9189.458346 C =10006.216888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.982 5.982 3 C 0.225 3.775 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.264 1.264 12 S 2.690 3.310 13 O -0.938 6.938 14 O -0.971 6.971 15 C -0.707 4.707 16 C 0.019 3.981 17 C -0.233 4.233 18 C 0.171 3.829 19 O -0.292 6.292 20 C 0.065 3.935 21 C 0.483 3.517 22 O -0.489 6.489 23 O -0.511 6.511 24 C -0.165 4.165 25 C 0.022 3.978 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.420 0.580 37 H 0.142 0.858 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 -14.877 -20.981 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.822 5.822 3 C 0.102 3.898 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.188 1.188 12 S 2.778 3.222 13 O -0.929 6.929 14 O -0.961 6.961 15 C -0.791 4.791 16 C 0.000 4.000 17 C -0.252 4.252 18 C 0.126 3.874 19 O -0.205 6.205 20 C -0.011 4.011 21 C 0.323 3.677 22 O -0.375 6.375 23 O -0.325 6.325 24 C -0.184 4.184 25 C 0.003 3.997 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.281 0.719 37 H 0.160 0.840 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.908 -14.940 -20.042 25.475 hybrid contribution 0.353 0.537 -2.047 2.145 sum -4.555 -14.403 -22.089 26.760 Atomic orbital electron populations 1.21298 0.79275 1.01340 1.02157 1.57139 1.14415 1.21894 1.88753 1.19530 0.91076 0.80438 0.98755 1.21355 1.36819 1.07088 0.91788 0.90296 1.24865 0.95362 0.97197 0.95522 1.69891 1.42538 1.21941 1.18871 0.86928 0.79389 0.80751 0.83111 1.20066 1.20833 1.18816 1.02145 0.73782 0.72628 0.73668 1.93609 1.40030 1.84066 1.75159 1.93514 1.66515 1.59915 1.76168 1.31495 1.04277 1.14430 1.28923 1.20731 0.96390 0.90033 0.92865 1.21305 0.99024 1.07948 0.96954 1.19170 0.93895 0.92647 0.81706 1.86095 1.44657 1.66314 1.23471 1.21873 0.92477 0.98201 0.88574 1.22577 0.81556 0.75393 0.88174 1.90806 1.24430 1.47785 1.74471 1.84425 1.52207 1.66577 1.29257 1.20567 1.00567 1.02345 0.94927 1.20889 0.94032 0.92209 0.92569 0.92383 0.91305 0.92637 0.94707 0.95121 0.92495 0.83818 0.84565 0.87071 0.87043 0.71917 0.84011 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.67 10.33 59.85 0.62 2.28 16 2 N -0.98 -19.10 3.17 -123.04 -0.39 -19.49 16 3 C 0.23 5.12 4.19 -5.19 -0.02 5.10 16 4 C -0.53 -14.83 9.94 -34.44 -0.34 -15.18 16 5 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 12 S 2.69 50.60 5.60 -107.50 -0.60 50.00 16 13 O -0.94 -21.13 16.25 -57.17 -0.93 -22.06 16 14 O -0.97 -18.90 16.34 -57.17 -0.93 -19.84 16 15 C -0.71 -10.56 5.98 -39.56 -0.24 -10.79 16 16 C 0.02 0.23 9.52 -39.60 -0.38 -0.15 16 17 C -0.23 -2.33 9.04 -39.43 -0.36 -2.69 16 18 C 0.17 1.94 6.69 -39.22 -0.26 1.67 16 19 O -0.29 -3.08 9.67 -39.39 -0.38 -3.46 16 20 C 0.07 0.42 5.33 36.00 0.19 0.61 16 21 C 0.48 3.60 8.40 36.00 0.30 3.90 16 22 O -0.49 -5.74 17.26 -25.47 -0.44 -6.18 16 23 O -0.51 -2.18 13.42 -39.26 -0.53 -2.70 16 24 C -0.16 -2.05 9.99 -39.44 -0.39 -2.45 16 25 C 0.02 0.31 9.52 -39.61 -0.38 -0.06 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 28 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 29 H 0.04 0.79 6.67 -51.93 -0.35 0.44 16 30 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.14 1.51 7.61 -52.49 -0.40 1.11 16 33 H 0.14 0.84 6.30 -52.49 -0.33 0.50 16 34 H 0.11 0.44 7.66 -51.93 -0.40 0.05 16 35 H 0.11 0.45 7.66 -51.93 -0.40 0.05 16 36 H 0.42 0.12 9.10 45.56 0.41 0.53 16 37 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.15 2.13 7.61 -52.49 -0.40 1.73 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -38.32 346.56 -7.72 -46.04 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.49 Total: -1.36 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.35 Total: -15.76 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.38 Total: -45.91 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -3.21 Total: -54.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.60 Total: 50.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.32 -7.72 -46.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037466035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.469 kcal (2) G-P(sol) polarization free energy of solvation -38.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds