Wall clock time and date at job start Tue Mar 31 2020 04:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.37981 * 126.53572 * 90.02647 * 3 2 1 5 5 C 1.40184 * 125.30611 * 359.97438 * 4 3 2 6 6 H 1.08001 * 120.00488 * 359.97438 * 5 4 3 7 7 C 1.40345 * 119.99694 * 180.02562 * 5 4 3 8 8 N 1.30588 * 120.00219 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99627 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47413 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46711 * 119.99961 * 9 7 5 12 12 H 1.48495 * 109.47077 * 239.99464 * 9 7 5 13 13 N 1.32510 * 109.38208 * 179.97438 * 4 3 2 14 14 C 1.33778 * 109.75360 * 359.97438 * 13 4 3 15 15 C 1.37463 * 126.53796 * 269.71180 * 3 2 1 16 16 C 1.38948 * 134.95040 * 0.03919 * 15 3 2 17 17 Br 1.89098 * 120.53953 * 359.97438 * 16 15 3 18 18 C 1.38035 * 118.92241 * 179.97438 * 16 15 3 19 19 N 1.32382 * 121.40444 * 359.97438 * 18 16 15 20 20 C 1.31598 * 122.46332 * 359.62366 * 19 18 16 21 21 Cl 1.73602 * 119.91365 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 0.97001 * 119.99992 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.29883 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2925 2.1555 1.1087 5 6 2.1470 1.7436 2.4407 6 1 1.7940 0.7473 2.6624 7 6 2.4591 2.6263 3.4862 8 7 2.8854 3.8312 3.2182 9 14 2.2645 2.0776 5.2612 10 1 1.7687 0.6782 5.2953 11 1 3.5779 2.1549 5.9499 12 1 1.2918 2.9638 5.9494 13 7 2.7149 3.3492 0.7178 14 6 2.7354 3.4063 -0.6186 15 6 2.2963 2.1510 -1.1045 16 6 2.2336 1.9550 -2.4786 17 35 1.6522 0.3013 -3.1878 18 6 2.6026 2.9871 -3.3176 19 7 3.0117 4.1519 -2.8398 20 6 3.0847 4.3996 -1.5494 21 17 3.6314 5.9514 -0.9953 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1014 4.4412 3.9408 28 1 2.5559 2.8415 -4.3868 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038540314.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:01 Heat of formation + Delta-G solvation = 49.392625 kcal Electronic energy + Delta-G solvation = -17873.636886 eV Core-core repulsion = 14803.441852 eV Total energy + Delta-G solvation = -3070.195033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 328.963 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.69388 -39.32119 -37.31442 -35.90681 -35.37048 -33.46027 -31.25515 -31.09580 -29.67134 -28.31947 -24.84697 -23.74585 -23.38230 -21.55984 -19.11298 -18.51087 -18.12799 -16.93469 -16.52220 -16.42520 -15.71204 -15.31311 -14.98269 -14.73947 -14.58334 -13.65037 -13.38592 -13.27112 -13.07443 -13.03595 -12.82420 -12.62980 -12.27858 -12.04209 -11.93300 -11.79222 -11.32060 -11.10607 -10.77803 -10.64328 -10.11817 -9.70762 -8.91452 -8.62708 -6.73000 -0.28081 0.47783 0.57238 1.15728 1.41548 1.43084 1.60572 1.97179 2.11884 2.23209 2.82219 3.35684 3.52574 3.79273 3.85652 4.05694 4.21458 4.25796 4.43581 4.53669 4.79750 4.83604 4.96195 5.21105 5.24432 5.35220 5.64337 5.81757 6.05154 6.56734 6.88027 6.89717 7.73648 8.27819 Molecular weight = 328.96amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.006592 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.655885 B = 4246.627054 C = 6279.432888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.105 3.895 3 N -0.522 5.522 4 C 0.389 3.611 5 C -0.432 4.432 6 H 0.115 0.885 7 C 0.030 3.970 8 N -0.747 5.747 9 Si 1.002 2.998 10 H -0.242 1.242 11 H -0.268 1.268 12 H -0.268 1.268 13 N -0.549 5.549 14 C 0.056 3.944 15 C 0.058 3.942 16 C -0.124 4.124 17 Br -0.021 7.021 18 C 0.075 3.925 19 N -0.476 5.476 20 C 0.147 3.853 21 Cl -0.040 7.040 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.290 0.710 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 -9.500 -5.376 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.016 4.016 3 N -0.217 5.217 4 C 0.156 3.844 5 C -0.468 4.468 6 H 0.133 0.867 7 C -0.195 4.195 8 N -0.368 5.368 9 Si 0.820 3.180 10 H -0.165 1.165 11 H -0.193 1.193 12 H -0.193 1.193 13 N -0.274 5.274 14 C -0.079 4.079 15 C -0.062 4.062 16 C -0.210 4.210 17 Br 0.063 6.937 18 C -0.083 4.083 19 N -0.189 5.189 20 C -0.024 4.024 21 Cl -0.012 7.012 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.419 -8.652 -5.513 10.814 hybrid contribution -0.155 -0.412 0.873 0.978 sum -3.574 -9.065 -4.640 10.792 Atomic orbital electron populations 1.22070 0.93906 1.03787 1.01660 1.21983 0.96134 0.78880 1.04648 1.45793 1.58812 1.13687 1.03395 1.20968 0.90428 0.84146 0.88866 1.19203 1.39544 1.01814 0.86279 0.86734 1.27020 0.92441 0.93893 1.06185 1.70075 1.24120 1.05857 1.36745 0.84853 0.78932 0.80241 0.73942 1.16458 1.19292 1.19323 1.71332 1.31280 1.19244 1.05521 1.20202 1.01380 0.92378 0.93897 1.18726 1.04575 0.93749 0.89142 1.21696 1.12496 0.96055 0.90757 1.96494 1.88820 1.24109 1.84313 1.22308 1.00239 0.85798 0.99954 1.66777 1.16336 1.22981 1.12801 1.20653 1.05620 0.87809 0.88296 1.98305 1.88005 1.26438 1.88432 0.93258 0.93397 0.88021 0.88665 0.88658 0.89947 0.79022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.24 71.98 0.74 -3.62 15 2 C 0.10 3.37 6.06 86.38 0.52 3.90 15 3 N -0.52 -22.48 2.85 -512.77 -1.46 -23.94 15 4 C 0.39 19.58 7.41 133.63 0.99 20.57 15 5 C -0.43 -20.08 8.99 23.26 0.21 -19.87 15 6 H 0.11 4.63 7.10 -2.91 -0.02 4.61 15 7 C 0.03 1.36 5.50 85.39 0.47 1.83 15 8 N -0.75 -37.73 11.85 21.89 0.26 -37.47 15 9 Si 1.00 33.17 29.56 68.60 2.03 35.20 15 10 H -0.24 -7.29 7.11 99.48 0.71 -6.58 15 11 H -0.27 -8.77 7.11 99.48 0.71 -8.07 15 12 H -0.27 -8.79 7.11 99.48 0.71 -8.09 15 13 N -0.55 -30.26 9.33 -186.32 -1.74 -32.00 15 14 C 0.06 2.83 7.05 40.24 0.28 3.11 15 15 C 0.06 2.61 6.85 39.26 0.27 2.88 15 16 C -0.12 -4.66 6.25 22.39 0.14 -4.52 15 17 Br -0.02 -0.60 30.87 -20.37 -0.63 -1.23 15 18 C 0.08 2.76 10.92 84.56 0.92 3.68 15 19 N -0.48 -20.25 10.30 -185.01 -1.91 -22.16 15 20 C 0.15 6.98 7.36 85.29 0.63 7.60 15 21 Cl -0.04 -1.78 29.14 -2.72 -0.08 -1.86 15 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.10 2.85 7.32 -2.39 -0.02 2.83 15 26 H 0.10 2.78 5.69 -2.39 -0.01 2.77 15 27 H 0.29 13.21 8.29 -92.71 -0.77 12.44 15 28 H 0.19 5.43 8.06 -2.91 -0.02 5.41 15 Total: -1.00 -60.48 282.74 2.87 -57.61 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.22 Total: 10.27 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.17 Total: 15.56 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.84 Total: -115.57 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.03 Total: 35.20 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.63 Total: -1.23 kcal Total: -60.48 2.87 -57.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038540314.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.006 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds