Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99650 * 2 1 4 4 C 1.52999 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47073 * 64.99881 * 4 3 2 6 6 S 1.65601 * 119.99967 * 164.99944 * 5 4 3 7 7 O 1.42101 * 106.40372 * 311.45810 * 6 5 4 8 8 O 1.42103 * 106.40301 * 178.53831 * 6 5 4 9 9 C 1.76198 * 107.21863 * 65.00020 * 6 5 4 10 10 C 1.38404 * 119.92236 * 270.25566 * 9 6 5 11 11 C 1.38350 * 120.31123 * 180.26022 * 10 9 6 12 12 C 1.37960 * 120.15221 * 359.47965 * 11 10 9 13 13 C 1.39647 * 119.84271 * 0.25959 * 12 11 10 14 14 C 1.47660 * 120.15351 * 179.97438 * 13 12 11 15 15 O 1.21500 * 120.00179 * 180.02562 * 14 13 12 16 16 O 1.34739 * 119.99703 * 359.97438 * 14 13 12 17 17 C 1.34851 * 116.99887 * 179.97438 * 16 14 13 18 18 H 1.08006 * 120.00059 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00205 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00088 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47154 * 89.99874 * 21 19 17 23 23 H 1.48504 * 109.47095 * 209.99714 * 21 19 17 24 24 H 1.48502 * 109.47296 * 329.99720 * 21 19 17 25 25 C 1.37910 * 119.92419 * 89.99907 * 9 6 5 26 26 H 1.09003 * 109.47175 * 60.00563 * 1 2 3 27 27 H 1.09007 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47439 * 300.00269 * 1 2 3 29 29 H 1.08998 * 109.47288 * 59.99174 * 3 2 1 30 30 H 1.09004 * 109.46685 * 299.99140 * 3 2 1 31 31 H 1.08997 * 109.47087 * 305.00045 * 4 3 2 32 32 H 1.09009 * 109.47007 * 184.99294 * 4 3 2 33 33 H 0.97006 * 120.00048 * 344.99880 * 5 4 3 34 34 H 1.08005 * 119.84277 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.92701 * 179.76652 * 11 10 9 36 36 H 1.07999 * 120.07737 * 180.23566 * 12 11 10 37 37 H 0.97006 * 119.99630 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.07692 * 0.02562 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 16 5.5698 0.6402 -1.6961 7 8 5.9626 1.9981 -1.5510 8 8 5.6790 -0.0740 -2.9198 9 6 6.4891 -0.2740 -0.5029 10 6 6.9809 0.3611 0.6242 11 6 7.7083 -0.3477 1.5637 12 6 7.9392 -1.6964 1.3878 13 6 7.4413 -2.3448 0.2556 14 6 7.6849 -3.7880 0.0602 15 8 7.2508 -4.3493 -0.9261 16 8 8.3893 -4.4823 0.9752 17 6 8.5751 -5.7964 0.7365 18 1 8.1667 -6.2462 -0.1565 19 6 9.2913 -6.5712 1.6386 20 7 9.4727 -7.8518 1.4057 21 14 9.9970 -5.7936 3.1834 22 1 9.0005 -5.8803 4.2809 23 1 11.2337 -6.5140 3.5797 24 1 10.3181 -4.3682 2.9179 25 6 6.7124 -1.6217 -0.6915 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6884 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.8507 0.5687 0.8427 32 1 3.9783 2.1768 0.0901 33 1 3.3355 0.1085 -1.8187 34 1 6.7991 1.4159 0.7692 35 1 8.0923 0.1550 2.4391 36 1 8.5039 -2.2493 2.1238 37 1 9.9735 -8.3931 2.0360 38 1 6.3249 -2.1168 -1.5696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044989161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = -165.723635 kcal Electronic energy + Delta-G solvation = -25476.786118 eV Core-core repulsion = 21412.398609 eV Total energy + Delta-G solvation = -4064.387509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -39.79414 -38.52619 -38.40278 -37.33703 -35.96190 -35.44333 -35.35471 -32.48883 -31.50419 -31.11997 -29.55432 -26.58695 -26.01237 -23.69984 -23.21486 -22.89082 -20.62556 -19.60788 -18.30691 -18.07087 -17.63117 -16.98237 -16.85294 -16.40257 -16.02429 -15.87283 -15.35948 -15.10186 -14.88552 -14.85950 -14.45833 -14.08513 -13.84754 -13.76201 -13.11969 -12.84367 -12.60151 -12.45769 -12.38899 -12.26365 -12.20456 -12.10573 -11.88313 -11.55285 -11.54119 -11.39939 -10.89831 -10.63685 -10.50319 -10.12221 -9.85054 -9.80881 -9.44056 -9.35595 -9.02270 -8.79635 -6.50190 -4.21379 0.25208 0.68459 1.05543 2.74466 3.01153 3.15023 3.17396 3.25823 3.33663 3.59823 3.87358 3.98038 4.12946 4.27669 4.43804 4.66972 4.79052 4.84494 4.86170 4.95087 4.99556 5.02324 5.10352 5.16320 5.28012 5.31587 5.34721 5.40006 5.57990 5.77085 5.85321 6.11797 6.28917 6.43582 6.68625 6.74212 6.75363 7.59640 7.91344 8.50251 8.86584 9.53382 10.57446 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.003150 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.359387 B = 8888.120984 C = 9398.936089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.053 3.947 4 C 0.118 3.882 5 N -1.113 6.113 6 S 2.701 3.299 7 O -0.960 6.960 8 O -0.952 6.952 9 C -0.688 4.688 10 C -0.015 4.015 11 C -0.148 4.148 12 C -0.024 4.024 13 C -0.104 4.104 14 C 0.441 3.559 15 O -0.531 6.531 16 O -0.241 6.241 17 C -0.374 4.374 18 H 0.113 0.887 19 C 0.066 3.934 20 N -0.864 5.864 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.259 1.259 25 C 0.032 3.968 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.424 0.576 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.282 0.718 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 21.957 2.276 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.025 4.025 4 C -0.009 4.009 5 N -0.874 5.874 6 S 2.790 3.210 7 O -0.949 6.949 8 O -0.943 6.943 9 C -0.775 4.775 10 C -0.034 4.034 11 C -0.167 4.167 12 C -0.043 4.043 13 C -0.106 4.106 14 C 0.288 3.712 15 O -0.427 6.427 16 O -0.149 6.149 17 C -0.449 4.449 18 H 0.131 0.869 19 C -0.139 4.139 20 N -0.502 5.502 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.183 1.183 25 C 0.013 3.987 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.221 21.947 1.514 25.666 hybrid contribution 0.018 -0.441 1.179 1.259 sum -13.204 21.506 2.693 25.379 Atomic orbital electron populations 1.22773 0.80675 1.03150 0.99948 1.87950 1.19946 1.27262 1.95419 1.22728 0.92799 0.85567 1.01409 1.21386 0.94192 0.98975 0.86307 1.55455 1.27275 1.71597 1.33107 1.01688 0.72226 0.73781 0.73284 1.93572 1.81779 1.32964 1.86630 1.93627 1.85357 1.74189 1.41089 1.30761 1.21702 1.07404 1.17641 1.21009 0.92176 0.99497 0.90723 1.21242 1.00867 0.94269 1.00318 1.21918 0.92646 0.94428 0.95259 1.19503 1.02153 0.92202 0.96782 1.20325 0.81003 0.86752 0.83114 1.90699 1.51271 1.70571 1.30122 1.83504 1.61378 1.24387 1.45673 1.20751 1.34902 0.78864 1.10391 0.86944 1.24591 0.95901 0.94632 0.98789 1.69590 1.38446 1.05116 1.37073 0.86213 0.78760 0.80228 0.81732 1.19640 1.20502 1.18344 1.20974 0.90069 0.90882 0.96791 0.93969 0.89354 0.94001 0.91645 0.92180 0.90493 0.88619 0.74096 0.84169 0.84511 0.83760 0.90729 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.35 10.50 -35.23 -0.37 -3.72 16 3 C 0.05 0.33 6.13 37.16 0.23 0.56 16 4 C 0.12 0.84 6.61 -4.04 -0.03 0.81 16 5 N -1.11 -10.13 5.96 -10.61 -0.06 -10.19 16 6 S 2.70 32.77 5.73 -107.50 -0.62 32.15 16 7 O -0.96 -12.69 16.75 -57.17 -0.96 -13.64 16 8 O -0.95 -14.85 17.27 -57.17 -0.99 -15.84 16 9 C -0.69 -9.31 5.94 -39.64 -0.24 -9.54 16 10 C -0.01 -0.17 9.52 -39.48 -0.38 -0.54 16 11 C -0.15 -1.77 10.03 -39.64 -0.40 -2.17 16 12 C -0.02 -0.37 9.62 -39.16 -0.38 -0.75 16 13 C -0.10 -1.98 5.87 -104.98 -0.62 -2.59 16 14 C 0.44 10.74 7.84 34.58 0.27 11.01 16 15 O -0.53 -14.49 15.59 -19.27 -0.30 -14.79 16 16 O -0.24 -6.30 7.82 -21.65 -0.17 -6.47 16 17 C -0.37 -10.98 10.11 30.94 0.31 -10.67 16 18 H 0.11 3.65 7.09 -52.48 -0.37 3.28 16 19 C 0.07 1.85 5.50 -17.52 -0.10 1.75 16 20 N -0.86 -25.06 13.96 55.49 0.77 -24.29 16 21 Si 0.91 20.63 28.62 -169.99 -4.86 15.76 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 25 C 0.03 0.55 9.07 -39.16 -0.36 0.19 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.53 7.75 -51.92 -0.40 0.12 16 33 H 0.42 3.52 8.51 -34.47 -0.29 3.23 16 34 H 0.14 1.19 7.61 -52.48 -0.40 0.79 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.14 2.21 7.61 -52.49 -0.40 1.81 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.15 2.67 7.20 -52.49 -0.38 2.29 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -36.98 351.77 -7.15 -44.13 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.34 Total: 2.24 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.56 Total: -10.65 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.71 Total: -34.48 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.79 Total: -54.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.86 Total: 15.76 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.62 Total: 32.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.98 -7.15 -44.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044989161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.594 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds