Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99650 * 2 1 4 4 C 1.52999 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47073 * 64.99881 * 4 3 2 6 6 S 1.65601 * 119.99967 * 164.99944 * 5 4 3 7 7 O 1.42101 * 106.40372 * 311.45810 * 6 5 4 8 8 O 1.42103 * 106.40301 * 178.53831 * 6 5 4 9 9 C 1.76198 * 107.21863 * 65.00020 * 6 5 4 10 10 C 1.38404 * 119.92236 * 270.25566 * 9 6 5 11 11 C 1.38350 * 120.31123 * 180.26022 * 10 9 6 12 12 C 1.37960 * 120.15221 * 359.47965 * 11 10 9 13 13 C 1.39647 * 119.84271 * 0.25959 * 12 11 10 14 14 C 1.47660 * 120.15351 * 179.97438 * 13 12 11 15 15 O 1.21500 * 120.00179 * 180.02562 * 14 13 12 16 16 O 1.34739 * 119.99703 * 359.97438 * 14 13 12 17 17 C 1.34851 * 116.99887 * 179.97438 * 16 14 13 18 18 H 1.08006 * 120.00059 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00205 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00088 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99795 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47154 * 89.99874 * 21 19 17 23 23 H 1.48504 * 109.47095 * 209.99714 * 21 19 17 24 24 H 1.48502 * 109.47296 * 329.99720 * 21 19 17 25 25 C 1.37910 * 119.92419 * 89.99907 * 9 6 5 26 26 H 1.09003 * 109.47175 * 60.00563 * 1 2 3 27 27 H 1.09007 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47439 * 300.00269 * 1 2 3 29 29 H 1.08998 * 109.47288 * 59.99174 * 3 2 1 30 30 H 1.09004 * 109.46685 * 299.99140 * 3 2 1 31 31 H 1.08997 * 109.47087 * 305.00045 * 4 3 2 32 32 H 1.09009 * 109.47007 * 184.99294 * 4 3 2 33 33 H 0.97006 * 120.00048 * 344.99880 * 5 4 3 34 34 H 1.08005 * 119.84277 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.92701 * 179.76652 * 11 10 9 36 36 H 1.07999 * 120.07737 * 180.23566 * 12 11 10 37 37 H 0.97006 * 119.99630 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.07692 * 0.02562 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 16 5.5698 0.6402 -1.6961 7 8 5.9626 1.9981 -1.5510 8 8 5.6790 -0.0740 -2.9198 9 6 6.4891 -0.2740 -0.5029 10 6 6.9809 0.3611 0.6242 11 6 7.7083 -0.3477 1.5637 12 6 7.9392 -1.6964 1.3878 13 6 7.4413 -2.3448 0.2556 14 6 7.6849 -3.7880 0.0602 15 8 7.2508 -4.3493 -0.9261 16 8 8.3893 -4.4823 0.9752 17 6 8.5751 -5.7964 0.7365 18 1 8.1667 -6.2462 -0.1565 19 6 9.2913 -6.5712 1.6386 20 7 9.4727 -7.8518 1.4057 21 14 9.9970 -5.7936 3.1834 22 1 9.0005 -5.8803 4.2809 23 1 11.2337 -6.5140 3.5797 24 1 10.3181 -4.3682 2.9179 25 6 6.7124 -1.6217 -0.6915 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6884 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.8507 0.5687 0.8427 32 1 3.9783 2.1768 0.0901 33 1 3.3355 0.1085 -1.8187 34 1 6.7991 1.4159 0.7692 35 1 8.0923 0.1550 2.4391 36 1 8.5039 -2.2493 2.1238 37 1 9.9735 -8.3931 2.0360 38 1 6.3249 -2.1168 -1.5696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044989161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = -195.693714 kcal Electronic energy + Delta-G solvation = -25478.085718 eV Core-core repulsion = 21412.398609 eV Total energy + Delta-G solvation = -4065.687109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52935 -39.89197 -39.04171 -38.40339 -37.49963 -37.03729 -36.01959 -34.61518 -32.78671 -32.32773 -30.10997 -28.02447 -27.05774 -25.19685 -24.34970 -23.50369 -22.14611 -20.68613 -20.28233 -19.59563 -18.61649 -18.05494 -17.62748 -17.47079 -17.11716 -16.87465 -16.79733 -16.61513 -16.26471 -16.02530 -15.63812 -15.18679 -14.99979 -14.59564 -14.42878 -14.28563 -14.16384 -13.75241 -13.43798 -13.34094 -13.28898 -13.23238 -12.87290 -12.84418 -12.49336 -12.46155 -12.35073 -12.09821 -12.01925 -11.85115 -11.35943 -10.90719 -10.66296 -10.57581 -10.50026 -10.24279 -8.62235 -6.48814 -0.74253 -0.50916 -0.17812 1.30176 1.30653 1.49774 1.54508 1.93973 2.14646 2.25043 2.41946 2.68332 2.88124 2.89695 3.25827 3.68231 3.80945 3.90994 3.92617 4.05066 4.17982 4.30129 4.46269 4.51308 4.53622 4.59522 4.64779 4.67081 4.78037 4.85475 4.92638 5.03727 5.09668 5.13405 5.37528 5.62493 5.80292 6.00621 6.27137 6.38341 6.71095 7.42053 8.50443 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.003150 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.359387 B = 8888.120984 C = 9398.936089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.049 3.951 4 C 0.105 3.895 5 N -1.105 6.105 6 S 2.725 3.275 7 O -0.962 6.962 8 O -0.993 6.993 9 C -0.688 4.688 10 C 0.009 3.991 11 C -0.129 4.129 12 C -0.023 4.023 13 C -0.141 4.141 14 C 0.444 3.556 15 O -0.574 6.574 16 O -0.241 6.241 17 C -0.412 4.412 18 H 0.055 0.945 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.243 1.243 25 C 0.020 3.980 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.427 0.573 34 H 0.187 0.813 35 H 0.189 0.811 36 H 0.148 0.852 37 H 0.293 0.707 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 26.634 5.465 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.029 4.029 4 C -0.020 4.020 5 N -0.868 5.868 6 S 2.813 3.187 7 O -0.952 6.952 8 O -0.984 6.984 9 C -0.774 4.774 10 C -0.010 4.010 11 C -0.147 4.147 12 C -0.042 4.042 13 C -0.143 4.143 14 C 0.293 3.707 15 O -0.472 6.472 16 O -0.149 6.149 17 C -0.488 4.488 18 H 0.073 0.927 19 C -0.184 4.184 20 N -0.550 5.550 21 Si 0.803 3.197 22 H -0.179 1.179 23 H -0.188 1.188 24 H -0.166 1.166 25 C 0.000 4.000 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.264 0.736 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.293 26.624 4.690 30.126 hybrid contribution -0.147 -1.690 0.073 1.698 sum -13.440 24.934 4.762 28.723 Atomic orbital electron populations 1.22883 0.79657 1.03357 1.01094 1.87904 1.21272 1.28932 1.95679 1.22885 0.92000 0.84939 1.03032 1.21758 0.95185 1.00033 0.85042 1.55257 1.25778 1.71653 1.34147 1.00933 0.72572 0.73001 0.72206 1.93562 1.82408 1.32671 1.86545 1.93577 1.86253 1.75017 1.43511 1.31001 1.21790 1.05672 1.18916 1.21692 0.89150 1.01464 0.88722 1.21764 0.99088 0.92291 1.01550 1.22079 0.92161 0.96253 0.93695 1.19264 1.06218 0.88828 0.99999 1.21591 0.78483 0.88923 0.81691 1.90662 1.52511 1.72210 1.31781 1.83499 1.62551 1.22753 1.46117 1.20382 1.37661 0.80721 1.10016 0.92655 1.25685 0.95245 0.94935 1.02518 1.69689 1.39354 1.06894 1.39021 0.85068 0.78496 0.79922 0.76176 1.17875 1.18809 1.16581 1.20840 0.90593 0.92506 0.96028 0.92980 0.89765 0.92660 0.89277 0.91228 0.90187 0.86231 0.73646 0.79547 0.79386 0.83398 0.89726 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -6.55 10.50 -148.98 -1.56 -8.12 16 3 C 0.05 0.47 6.13 71.98 0.44 0.91 16 4 C 0.10 1.13 6.61 86.38 0.57 1.70 16 5 N -1.10 -17.86 5.96 -187.48 -1.12 -18.98 16 6 S 2.72 61.10 5.73 -56.49 -0.32 60.78 16 7 O -0.96 -22.02 16.75 -128.00 -2.14 -24.17 16 8 O -0.99 -31.23 17.27 -128.00 -2.21 -33.44 16 9 C -0.69 -17.08 5.94 22.23 0.13 -16.94 16 10 C 0.01 0.15 9.52 22.34 0.21 0.37 16 11 C -0.13 -2.37 10.03 22.23 0.22 -2.15 16 12 C -0.02 -0.67 9.62 22.54 0.22 -0.45 16 13 C -0.14 -5.42 5.87 -20.10 -0.12 -5.54 16 14 C 0.44 22.98 7.84 70.31 0.55 23.53 16 15 O -0.57 -34.21 15.59 19.83 0.31 -33.90 16 16 O -0.24 -13.14 7.82 11.30 0.09 -13.05 16 17 C -0.41 -25.91 10.11 67.96 0.69 -25.22 16 18 H 0.06 3.99 7.09 -2.91 -0.02 3.97 16 19 C 0.02 0.99 5.50 84.89 0.47 1.45 16 20 N -0.91 -55.13 13.96 21.63 0.30 -54.83 16 21 Si 0.99 42.23 28.62 68.60 1.96 44.19 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 25 C 0.02 0.69 9.07 22.54 0.20 0.89 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 0.73 7.75 -2.38 -0.02 0.71 16 33 H 0.43 6.66 8.51 -96.74 -0.82 5.83 16 34 H 0.19 1.75 7.61 -2.91 -0.02 1.73 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.15 4.12 7.61 -2.91 -0.02 4.10 16 37 H 0.29 15.81 8.31 -92.70 -0.77 15.04 16 38 H 0.13 4.95 7.20 -2.91 -0.02 4.93 16 Total: -1.00 -88.75 351.77 0.42 -88.33 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.28 Total: 13.11 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 4.84 Total: -19.93 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.82 Total: -73.80 kcal Atomic # 8 Polarization: -107.15 SS G_CDS: -5.52 Total: -112.67 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.96 Total: 44.19 kcal Atomic # 16 Polarization: 61.10 SS G_CDS: -0.32 Total: 60.78 kcal Total: -88.75 0.42 -88.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044989161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.365 kcal (2) G-P(sol) polarization free energy of solvation -88.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds