Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47258 * 2 1 4 4 O 1.42903 * 109.46459 * 240.00066 * 2 1 3 5 5 C 1.52999 * 109.47142 * 120.00296 * 2 1 3 6 6 N 1.46497 * 109.47084 * 184.99627 * 5 2 1 7 7 S 1.65600 * 120.00096 * 164.99941 * 6 5 2 8 8 O 1.42101 * 106.40087 * 178.54389 * 7 6 5 9 9 O 1.42103 * 106.39956 * 311.45682 * 7 6 5 10 10 C 1.76191 * 107.21792 * 64.99908 * 7 6 5 11 11 C 1.38375 * 119.84856 * 269.72557 * 10 7 6 12 12 C 1.37930 * 120.15780 * 179.76710 * 11 10 7 13 13 C 1.39672 * 119.84252 * 0.52715 * 12 11 10 14 14 C 1.47666 * 120.15237 * 179.70128 * 13 12 11 15 15 O 1.21510 * 119.99656 * 180.02562 * 14 13 12 16 16 O 1.34726 * 120.00017 * 0.02665 * 14 13 12 17 17 C 1.34857 * 117.00339 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.98899 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00426 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00138 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99776 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46799 * 90.00584 * 21 19 17 23 23 H 1.48504 * 109.47214 * 210.00166 * 21 19 17 24 24 H 1.48498 * 109.47250 * 330.00486 * 21 19 17 25 25 C 1.39663 * 119.69239 * 359.73010 * 13 12 11 26 26 C 1.37933 * 119.84586 * 359.97438 * 25 13 12 27 27 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46943 * 300.00173 * 1 2 3 29 29 H 1.08999 * 109.47269 * 59.99828 * 1 2 3 30 30 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 31 31 H 1.08991 * 109.46855 * 304.99497 * 5 2 1 32 32 H 1.08998 * 109.46998 * 64.99493 * 5 2 1 33 33 H 0.96999 * 119.99833 * 344.99897 * 6 5 2 34 34 H 1.08004 * 119.92387 * 0.02562 * 11 10 7 35 35 H 1.08001 * 120.08148 * 180.23149 * 12 11 10 36 36 H 0.96995 * 120.00343 * 179.97438 * 20 19 17 37 37 H 1.08005 * 120.07517 * 179.97438 * 25 13 12 38 38 H 1.07997 * 119.92530 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6180 1.3108 7 16 4.2965 -0.9720 2.7189 8 8 5.6821 -0.8117 2.4474 9 8 3.6200 -0.2668 3.7507 10 6 4.0477 -2.6861 3.0421 11 6 2.9635 -3.0939 3.7990 12 6 2.7600 -4.4345 4.0518 13 6 3.6575 -5.3803 3.5512 14 6 3.4498 -6.8168 3.8233 15 8 4.2327 -7.6371 3.3867 16 8 2.3924 -7.2177 4.5556 17 6 2.2609 -8.5431 4.7665 18 1 2.9855 -9.2298 4.3546 19 6 1.1943 -9.0247 5.5130 20 7 0.3123 -8.1891 6.0138 21 14 1.0119 -10.8608 5.8046 22 1 1.7305 -11.2383 7.0481 23 1 -0.4274 -11.1996 5.9424 24 1 1.5875 -11.6041 4.6551 25 6 4.7526 -4.9611 2.7925 26 6 4.9405 -3.6178 2.5422 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7209 -0.2701 -1.9980 31 1 1.6055 -0.2618 2.1368 32 1 1.7516 -1.7715 1.2055 33 1 4.0003 -0.3423 0.5269 34 1 2.2726 -2.3612 4.1892 35 1 1.9113 -4.7517 4.6396 36 1 -0.4332 -8.5256 6.5351 37 1 5.4507 -5.6872 2.4026 38 1 5.7866 -3.2922 1.9554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046446388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -179.645293 kcal Electronic energy + Delta-G solvation = -25362.904440 eV Core-core repulsion = 21297.913243 eV Total energy + Delta-G solvation = -4064.991197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62840 -38.34326 -38.22713 -37.28934 -35.93133 -35.31629 -34.88005 -32.42212 -31.33521 -31.29788 -30.90672 -26.17850 -25.95642 -23.99412 -22.61443 -21.92055 -20.55124 -19.55492 -18.14981 -17.93111 -17.81058 -17.54895 -17.10813 -16.53619 -15.60159 -15.14031 -15.09569 -14.70627 -14.64776 -14.46192 -14.24766 -13.79658 -13.54580 -13.40190 -13.28384 -13.05425 -12.74841 -12.64401 -12.40407 -12.17208 -12.09043 -12.08410 -11.77012 -11.36725 -11.22310 -11.09783 -10.89659 -10.63322 -10.53963 -10.46611 -10.03012 -9.77746 -9.25865 -9.16998 -8.91964 -8.76932 -6.64446 -4.24337 0.26874 0.63712 1.47178 2.77695 3.01477 3.08570 3.14701 3.22411 3.64536 3.75839 3.76508 4.10825 4.25108 4.33304 4.40870 4.60635 4.70232 4.90226 4.97510 4.98090 5.02721 5.20493 5.42078 5.45137 5.49536 5.50785 5.58598 5.79587 5.79784 5.91090 6.04665 6.22418 6.48725 6.74097 6.78632 6.94189 7.19834 7.23408 7.73337 8.51542 8.83560 9.61894 10.52278 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.002912 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.414347 B = 9614.259334 C =10396.663711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.064 0.936 4 O -0.563 6.563 5 C 0.120 3.880 6 N -1.113 6.113 7 S 2.700 3.300 8 O -0.960 6.960 9 O -0.959 6.959 10 C -0.675 4.675 11 C -0.033 4.033 12 C -0.098 4.098 13 C -0.024 4.024 14 C 0.416 3.584 15 O -0.549 6.549 16 O -0.198 6.198 17 C -0.370 4.370 18 H 0.101 0.899 19 C 0.042 3.958 20 N -0.850 5.850 21 Si 0.949 3.051 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.096 4.096 26 C -0.029 4.029 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.380 0.620 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.421 0.579 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.274 0.726 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 17.843 -11.118 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.036 3.964 3 H 0.082 0.918 4 O -0.369 6.369 5 C -0.006 4.006 6 N -0.874 5.874 7 S 2.791 3.209 8 O -0.951 6.951 9 O -0.949 6.949 10 C -0.763 4.763 11 C -0.053 4.053 12 C -0.117 4.117 13 C -0.026 4.026 14 C 0.264 3.736 15 O -0.448 6.448 16 O -0.104 6.104 17 C -0.446 4.446 18 H 0.119 0.881 19 C -0.164 4.164 20 N -0.485 5.485 21 Si 0.772 3.228 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.115 4.115 26 C -0.049 4.049 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.227 0.773 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.256 0.744 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.337 17.754 -9.942 20.351 hybrid contribution -0.531 -1.195 -0.686 1.476 sum -0.195 16.559 -10.628 19.677 Atomic orbital electron populations 1.22493 0.95395 1.03690 1.03091 1.21943 0.93387 0.95411 0.85680 0.91759 1.86566 1.76937 1.57581 1.15859 1.21431 0.79251 1.02099 0.97840 1.55420 1.15497 1.84902 1.31537 1.01635 0.72854 0.73814 0.72630 1.93586 1.30778 1.86120 1.84583 1.93580 1.75583 1.70537 1.55163 1.30797 1.06383 1.25113 1.14036 1.20852 0.94395 0.96669 0.93352 1.21748 0.99473 0.92062 0.98435 1.19813 0.94947 0.91904 0.95927 1.20677 0.82696 0.88203 0.81982 1.90645 1.46502 1.54401 1.53234 1.83874 1.40389 1.28283 1.57832 1.21425 1.11212 0.79028 1.32901 0.88143 1.25462 0.94496 1.01088 0.95382 1.69963 1.12190 1.35367 1.31004 0.85585 0.77993 0.79743 0.79437 1.19602 1.20067 1.18835 1.21346 0.97003 0.95871 0.97321 1.20734 0.96424 0.92257 0.95458 0.91095 0.90950 0.91824 0.77304 0.88678 0.90453 0.74381 0.84050 0.83127 0.91560 0.83925 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.99 9.53 37.16 0.35 -0.64 16 2 C 0.10 0.62 3.67 -26.73 -0.10 0.52 16 3 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 4 O -0.56 -4.05 13.12 -35.23 -0.46 -4.51 16 5 C 0.12 0.99 5.89 -4.04 -0.02 0.97 16 6 N -1.11 -10.15 5.96 -10.62 -0.06 -10.22 16 7 S 2.70 32.71 5.74 -107.50 -0.62 32.09 16 8 O -0.96 -13.79 17.27 -57.17 -0.99 -14.78 16 9 O -0.96 -13.58 16.73 -57.17 -0.96 -14.54 16 10 C -0.68 -9.44 5.95 -39.48 -0.24 -9.67 16 11 C -0.03 -0.49 9.50 -39.64 -0.38 -0.87 16 12 C -0.10 -1.74 9.62 -39.16 -0.38 -2.12 16 13 C -0.02 -0.49 5.87 -104.98 -0.62 -1.10 16 14 C 0.42 10.44 7.84 34.58 0.27 10.71 16 15 O -0.55 -14.83 15.59 -19.27 -0.30 -15.13 16 16 O -0.20 -5.51 8.99 -21.63 -0.19 -5.70 16 17 C -0.37 -10.60 9.65 30.94 0.30 -10.30 16 18 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 19 C 0.04 1.13 5.50 -17.52 -0.10 1.03 16 20 N -0.85 -23.63 13.67 55.49 0.76 -22.88 16 21 Si 0.95 20.37 29.55 -169.99 -5.02 15.35 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.10 -1.66 9.60 -39.16 -0.38 -2.04 16 26 C -0.03 -0.43 9.50 -39.64 -0.38 -0.80 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.38 1.17 9.08 45.56 0.41 1.59 16 31 H 0.10 0.69 7.75 -51.93 -0.40 0.29 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.42 3.26 8.51 -34.47 -0.29 2.97 16 34 H 0.14 1.70 7.60 -52.48 -0.40 1.30 16 35 H 0.15 2.76 7.61 -52.49 -0.40 2.37 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.14 2.38 7.65 -52.48 -0.40 1.98 16 38 H 0.14 1.70 7.60 -52.49 -0.40 1.30 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -36.48 351.75 -7.69 -44.17 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.49 Total: 5.15 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.65 Total: -14.31 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.70 Total: -33.09 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -2.90 Total: -54.66 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 32.71 SS G_CDS: -0.62 Total: 32.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.48 -7.69 -44.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046446388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.478 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds