Wall clock time and date at job start Tue Mar 31 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47361 * 2 1 4 4 O 1.42896 * 109.47401 * 120.00567 * 2 1 3 5 5 C 1.53006 * 109.46988 * 240.00269 * 2 1 3 6 6 N 1.46496 * 109.47335 * 180.02562 * 5 2 1 7 7 S 1.65598 * 120.00109 * 165.00102 * 6 5 2 8 8 O 1.42100 * 106.40240 * 311.45954 * 7 6 5 9 9 O 1.42101 * 106.40362 * 178.54201 * 7 6 5 10 10 C 1.76200 * 107.21867 * 65.00201 * 7 6 5 11 11 C 1.38377 * 119.84814 * 90.00098 * 10 7 6 12 12 C 1.37930 * 120.15126 * 180.30153 * 11 10 7 13 13 C 1.39666 * 119.84763 * 359.46728 * 12 11 10 14 14 C 1.47660 * 120.15292 * 180.25535 * 13 12 11 15 15 O 1.21507 * 120.00058 * 180.27158 * 14 13 12 16 16 O 1.34733 * 120.00048 * 0.27452 * 14 13 12 17 17 C 1.34856 * 117.00027 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99659 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00013 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00167 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99803 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47286 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47201 * 120.00131 * 21 19 17 24 24 H 1.48505 * 109.46555 * 239.99921 * 21 19 17 25 25 C 1.39665 * 119.69042 * 0.52834 * 13 12 11 26 26 C 1.37928 * 119.84801 * 359.72875 * 25 13 12 27 27 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46722 * 299.99871 * 1 2 3 29 29 H 1.09002 * 109.47137 * 59.99466 * 1 2 3 30 30 H 0.96706 * 113.99771 * 59.99513 * 4 2 1 31 31 H 1.09002 * 109.46965 * 60.00159 * 5 2 1 32 32 H 1.09002 * 109.47273 * 300.00692 * 5 2 1 33 33 H 0.96997 * 120.00035 * 345.00093 * 6 5 2 34 34 H 1.08002 * 119.91882 * 0.02562 * 11 10 7 35 35 H 1.08004 * 120.07149 * 179.70422 * 12 11 10 36 36 H 0.96999 * 120.00048 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.07226 * 179.70152 * 25 13 12 38 38 H 1.07998 * 119.92709 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5050 -0.7218 -1.2491 7 16 4.3328 -1.7360 -2.2633 8 8 3.7513 -3.0230 -2.1061 9 8 5.7136 -1.4760 -2.0514 10 6 3.9781 -1.2278 -3.9127 11 6 4.7818 -0.2863 -4.5311 12 6 4.5062 0.1207 -5.8199 13 6 3.4197 -0.4280 -6.5047 14 6 3.1219 -0.0014 -7.8866 15 8 2.1730 -0.4769 -8.4781 16 8 3.9024 0.9151 -8.4917 17 6 3.5750 1.2609 -9.7534 18 1 2.7199 0.8078 -10.2329 19 6 4.3371 2.1992 -10.4358 20 7 5.3773 2.7509 -9.8522 21 14 3.8832 2.6787 -12.1833 22 1 2.6793 1.9201 -12.6079 23 1 3.5963 4.1347 -12.2384 24 1 5.0136 2.3621 -13.0928 25 6 2.6128 -1.3779 -5.8744 26 6 2.8968 -1.7717 -4.5834 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7210 -1.5953 1.2327 31 1 1.6767 -0.2073 -2.1393 32 1 1.6766 -1.7489 -1.2495 33 1 3.9901 -0.1281 -0.6549 34 1 5.6241 0.1341 -4.0018 35 1 5.1316 0.8591 -6.2996 36 1 5.9096 3.4069 -10.3290 37 1 1.7681 -1.8026 -6.3965 38 1 2.2734 -2.5058 -4.0946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046446390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:17 Heat of formation + Delta-G solvation = -181.143010 kcal Electronic energy + Delta-G solvation = -25309.932249 eV Core-core repulsion = 21244.876106 eV Total energy + Delta-G solvation = -4065.056143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67238 -38.49672 -38.27987 -37.31051 -35.95491 -35.35249 -34.74911 -32.45433 -31.36954 -31.31864 -30.95474 -26.17062 -25.99151 -24.03417 -22.66791 -22.25847 -20.59799 -19.59888 -18.15900 -17.96788 -17.82981 -17.29238 -16.96553 -16.29950 -15.90993 -15.37295 -15.04351 -14.74365 -14.62946 -14.51040 -14.36107 -14.21602 -13.55189 -13.43997 -13.34077 -13.04550 -12.76668 -12.45664 -12.41512 -12.20092 -12.13829 -12.09874 -11.79513 -11.40456 -11.31492 -11.14684 -10.93228 -10.67194 -10.55445 -10.53848 -10.05308 -9.81778 -9.29581 -9.22058 -8.97533 -8.80301 -6.67523 -4.27248 0.22332 0.58628 1.41611 2.73848 2.97875 3.06707 3.14497 3.18539 3.61127 3.72797 3.93797 4.06495 4.17491 4.29602 4.30958 4.53409 4.70061 4.86360 4.92063 4.95040 4.98680 5.07327 5.27295 5.38078 5.45357 5.51074 5.60206 5.73340 5.75365 5.85929 5.99244 6.18130 6.44369 6.68278 6.73915 6.89224 7.17043 7.22431 7.70167 8.48340 8.80455 9.58473 10.49137 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002670 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.691223 B =10483.498291 C =10896.433856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.098 3.902 3 H 0.107 0.893 4 O -0.559 6.559 5 C 0.081 3.919 6 N -1.112 6.112 7 S 2.701 3.299 8 O -0.960 6.960 9 O -0.958 6.958 10 C -0.677 4.677 11 C -0.028 4.028 12 C -0.098 4.098 13 C -0.024 4.024 14 C 0.415 3.585 15 O -0.549 6.549 16 O -0.197 6.197 17 C -0.369 4.369 18 H 0.102 0.898 19 C 0.041 3.959 20 N -0.849 5.849 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.097 4.097 26 C -0.035 4.035 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.378 0.622 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.421 0.579 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.274 0.726 37 H 0.143 0.857 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -4.226 18.664 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.037 3.963 3 H 0.125 0.875 4 O -0.365 6.365 5 C -0.046 4.046 6 N -0.872 5.872 7 S 2.791 3.209 8 O -0.950 6.950 9 O -0.948 6.948 10 C -0.765 4.765 11 C -0.048 4.048 12 C -0.117 4.117 13 C -0.025 4.025 14 C 0.263 3.737 15 O -0.448 6.448 16 O -0.103 6.103 17 C -0.445 4.445 18 H 0.119 0.881 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.116 4.116 26 C -0.055 4.055 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.225 0.775 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.256 0.744 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.546 -4.395 18.679 19.974 hybrid contribution -0.571 0.487 -1.467 1.648 sum -6.117 -3.908 17.211 18.680 Atomic orbital electron populations 1.22477 0.95350 1.03186 1.03500 1.22097 0.93467 0.96978 0.83729 0.87520 1.86595 1.77230 1.29381 1.43288 1.22115 0.79681 1.02583 1.00239 1.55400 1.15096 1.60840 1.55876 1.01632 0.72819 0.73293 0.73110 1.93568 1.78804 1.36959 1.85679 1.93596 1.30646 1.85269 1.85320 1.30828 1.07736 1.12794 1.25113 1.20854 0.96448 0.92589 0.94878 1.21770 0.96553 0.99322 0.94083 1.19818 0.95072 0.95359 0.92298 1.20667 0.83741 0.82273 0.86988 1.90645 1.30799 1.57254 1.66140 1.83877 1.49181 1.48265 1.29019 1.21481 1.13965 1.22776 0.86252 0.88061 1.25479 0.95066 0.95354 1.00588 1.69972 1.15244 1.25397 1.37769 0.85525 0.79075 0.78710 0.79492 1.18680 1.19877 1.19866 1.21335 0.99657 0.96200 0.94384 1.20740 0.94103 0.96251 0.94378 0.91796 0.91217 0.90941 0.77460 0.90374 0.89757 0.74355 0.83984 0.83110 0.91559 0.83933 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.88 9.53 37.16 0.35 -0.52 16 2 C 0.10 0.58 3.68 -26.73 -0.10 0.48 16 3 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 4 O -0.56 -3.93 13.20 -35.23 -0.47 -4.40 16 5 C 0.08 0.54 5.89 -4.04 -0.02 0.52 16 6 N -1.11 -9.15 5.86 -10.61 -0.06 -9.21 16 7 S 2.70 31.30 5.73 -107.50 -0.62 30.68 16 8 O -0.96 -13.03 16.74 -57.17 -0.96 -13.99 16 9 O -0.96 -13.73 17.27 -57.17 -0.99 -14.72 16 10 C -0.68 -8.96 5.95 -39.48 -0.24 -9.20 16 11 C -0.03 -0.41 9.50 -39.64 -0.38 -0.79 16 12 C -0.10 -1.71 9.62 -39.16 -0.38 -2.09 16 13 C -0.02 -0.46 5.87 -104.98 -0.62 -1.08 16 14 C 0.41 10.20 7.84 34.58 0.27 10.47 16 15 O -0.55 -14.53 15.59 -19.27 -0.30 -14.83 16 16 O -0.20 -5.43 8.99 -21.65 -0.19 -5.63 16 17 C -0.37 -10.45 9.65 30.94 0.30 -10.15 16 18 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 19 C 0.04 1.10 5.50 -17.52 -0.10 1.01 16 20 N -0.85 -23.46 13.67 55.49 0.76 -22.70 16 21 Si 0.95 20.17 29.55 -169.99 -5.02 15.15 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.10 -1.57 9.60 -39.16 -0.38 -1.95 16 26 C -0.04 -0.47 9.50 -39.64 -0.38 -0.85 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.38 1.57 9.05 45.56 0.41 1.98 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 33 H 0.42 2.98 8.65 -34.47 -0.30 2.68 16 34 H 0.14 1.74 7.60 -52.49 -0.40 1.34 16 35 H 0.15 2.75 7.61 -52.48 -0.40 2.35 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.14 2.24 7.65 -52.48 -0.40 1.84 16 38 H 0.14 1.48 7.60 -52.49 -0.40 1.08 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -36.02 351.85 -7.69 -43.71 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.50 Total: 4.78 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.65 Total: -14.15 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.70 Total: -31.91 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.90 Total: -53.57 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 31.30 SS G_CDS: -0.62 Total: 30.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.02 -7.69 -43.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046446390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.431 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds