Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47361 * 2 1 4 4 O 1.42896 * 109.47401 * 120.00567 * 2 1 3 5 5 C 1.53006 * 109.46988 * 240.00269 * 2 1 3 6 6 N 1.46496 * 109.47335 * 180.02562 * 5 2 1 7 7 S 1.65598 * 120.00109 * 165.00102 * 6 5 2 8 8 O 1.42100 * 106.40240 * 311.45954 * 7 6 5 9 9 O 1.42101 * 106.40362 * 178.54201 * 7 6 5 10 10 C 1.76200 * 107.21867 * 65.00201 * 7 6 5 11 11 C 1.38377 * 119.84814 * 90.00098 * 10 7 6 12 12 C 1.37930 * 120.15126 * 180.30153 * 11 10 7 13 13 C 1.39666 * 119.84763 * 359.46728 * 12 11 10 14 14 C 1.47660 * 120.15292 * 180.25535 * 13 12 11 15 15 O 1.21507 * 120.00058 * 180.27158 * 14 13 12 16 16 O 1.34733 * 120.00048 * 0.27452 * 14 13 12 17 17 C 1.34856 * 117.00027 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99659 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00013 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00167 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99803 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47286 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47201 * 120.00131 * 21 19 17 24 24 H 1.48505 * 109.46555 * 239.99921 * 21 19 17 25 25 C 1.39665 * 119.69042 * 0.52834 * 13 12 11 26 26 C 1.37928 * 119.84801 * 359.72875 * 25 13 12 27 27 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46722 * 299.99871 * 1 2 3 29 29 H 1.09002 * 109.47137 * 59.99466 * 1 2 3 30 30 H 0.96706 * 113.99771 * 59.99513 * 4 2 1 31 31 H 1.09002 * 109.46965 * 60.00159 * 5 2 1 32 32 H 1.09002 * 109.47273 * 300.00692 * 5 2 1 33 33 H 0.96997 * 120.00035 * 345.00093 * 6 5 2 34 34 H 1.08002 * 119.91882 * 0.02562 * 11 10 7 35 35 H 1.08004 * 120.07149 * 179.70422 * 12 11 10 36 36 H 0.96999 * 120.00048 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.07226 * 179.70152 * 25 13 12 38 38 H 1.07998 * 119.92709 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5050 -0.7218 -1.2491 7 16 4.3328 -1.7360 -2.2633 8 8 3.7513 -3.0230 -2.1061 9 8 5.7136 -1.4760 -2.0514 10 6 3.9781 -1.2278 -3.9127 11 6 4.7818 -0.2863 -4.5311 12 6 4.5062 0.1207 -5.8199 13 6 3.4197 -0.4280 -6.5047 14 6 3.1219 -0.0014 -7.8866 15 8 2.1730 -0.4769 -8.4781 16 8 3.9024 0.9151 -8.4917 17 6 3.5750 1.2609 -9.7534 18 1 2.7199 0.8078 -10.2329 19 6 4.3371 2.1992 -10.4358 20 7 5.3773 2.7509 -9.8522 21 14 3.8832 2.6787 -12.1833 22 1 2.6793 1.9201 -12.6079 23 1 3.5963 4.1347 -12.2384 24 1 5.0136 2.3621 -13.0928 25 6 2.6128 -1.3779 -5.8744 26 6 2.8968 -1.7717 -4.5834 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7210 -1.5953 1.2327 31 1 1.6767 -0.2073 -2.1393 32 1 1.6766 -1.7489 -1.2495 33 1 3.9901 -0.1281 -0.6549 34 1 5.6241 0.1341 -4.0018 35 1 5.1316 0.8591 -6.2996 36 1 5.9096 3.4069 -10.3290 37 1 1.7681 -1.8026 -6.3965 38 1 2.2734 -2.5058 -4.0946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046446390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = -210.640925 kcal Electronic energy + Delta-G solvation = -25311.211374 eV Core-core repulsion = 21244.876106 eV Total energy + Delta-G solvation = -4066.335269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42475 -39.85102 -38.99665 -38.34373 -37.37339 -37.00782 -35.38278 -34.45754 -32.78272 -32.24350 -31.78047 -27.92395 -26.68774 -25.62334 -23.93375 -22.76095 -22.25035 -20.57435 -20.01341 -19.36809 -18.90034 -18.50463 -17.87219 -17.23123 -16.80385 -16.74880 -16.72900 -16.33212 -15.89981 -15.81671 -15.45059 -14.98804 -14.87362 -14.66181 -14.24420 -14.12218 -13.87918 -13.66102 -13.56886 -13.26396 -13.23763 -13.19037 -12.96930 -12.67997 -12.49593 -12.47568 -12.22064 -12.13395 -12.05718 -11.72773 -11.28884 -11.05663 -10.80659 -10.62667 -10.45427 -10.22494 -8.66165 -6.42671 -0.91210 -0.61204 0.14559 1.23845 1.31638 1.50431 1.51318 1.97794 2.02129 2.43519 2.53397 2.70521 2.93088 3.20288 3.55818 3.65588 3.74521 3.76803 4.06719 4.12777 4.13674 4.29003 4.40137 4.45966 4.50025 4.64779 4.77671 4.84912 4.87863 4.92865 4.99782 5.08740 5.21421 5.25461 5.37397 5.59524 5.69859 6.05385 6.46305 6.77952 6.89357 7.57269 8.53866 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002670 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.691223 B =10483.498291 C =10896.433856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.107 0.893 4 O -0.576 6.576 5 C 0.070 3.930 6 N -1.098 6.098 7 S 2.730 3.270 8 O -0.971 6.971 9 O -0.981 6.981 10 C -0.662 4.662 11 C -0.024 4.024 12 C -0.102 4.102 13 C -0.060 4.060 14 C 0.420 3.580 15 O -0.573 6.573 16 O -0.225 6.225 17 C -0.419 4.419 18 H 0.086 0.914 19 C 0.000 4.000 20 N -0.890 5.890 21 Si 1.021 2.979 22 H -0.264 1.264 23 H -0.257 1.257 24 H -0.259 1.259 25 C -0.092 4.092 26 C -0.022 4.022 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.389 0.611 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.429 0.571 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.283 0.717 37 H 0.147 0.853 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -4.915 20.599 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.040 3.960 3 H 0.124 0.876 4 O -0.384 6.384 5 C -0.056 4.056 6 N -0.862 5.862 7 S 2.818 3.182 8 O -0.961 6.961 9 O -0.971 6.971 10 C -0.747 4.747 11 C -0.043 4.043 12 C -0.121 4.121 13 C -0.061 4.061 14 C 0.269 3.731 15 O -0.473 6.473 16 O -0.133 6.133 17 C -0.494 4.494 18 H 0.104 0.896 19 C -0.202 4.202 20 N -0.526 5.526 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.183 1.183 25 C -0.111 4.111 26 C -0.041 4.041 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.239 0.761 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.267 0.733 34 H 0.185 0.815 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.165 0.835 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.233 -5.092 20.621 22.136 hybrid contribution -0.424 0.532 -1.707 1.837 sum -6.656 -4.560 18.914 20.563 Atomic orbital electron populations 1.22450 0.94382 1.03842 1.03576 1.22095 0.94121 0.96762 0.82981 0.87559 1.86572 1.77599 1.30481 1.43736 1.22407 0.78319 1.03695 1.01202 1.55112 1.15918 1.60540 1.54593 1.00851 0.72080 0.73049 0.72251 1.93558 1.78982 1.38052 1.85523 1.93570 1.32605 1.85658 1.85313 1.31366 1.06371 1.10688 1.26288 1.21073 0.97213 0.92546 0.93492 1.21667 0.95920 0.99241 0.95311 1.19689 0.97831 0.98425 0.90194 1.21692 0.82393 0.80432 0.88549 1.90593 1.31633 1.57670 1.67423 1.83905 1.50349 1.49796 1.29205 1.21605 1.15225 1.25287 0.87312 0.89631 1.26630 0.94426 0.94258 1.04897 1.70042 1.16387 1.26332 1.39871 0.84525 0.79014 0.78951 0.73601 1.18747 1.18101 1.18300 1.21475 0.99089 0.95083 0.95447 1.21135 0.94098 0.95938 0.92881 0.90889 0.91453 0.90570 0.76137 0.89390 0.88630 0.73322 0.81540 0.84835 0.90719 0.83542 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.53 71.98 0.69 -0.55 16 2 C 0.10 0.90 3.68 30.60 0.11 1.02 16 3 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 4 O -0.58 -6.57 13.20 -148.98 -1.97 -8.54 16 5 C 0.07 0.69 5.89 86.38 0.51 1.20 16 6 N -1.10 -14.32 5.86 -187.48 -1.10 -15.42 16 7 S 2.73 54.05 5.73 -56.49 -0.32 53.73 16 8 O -0.97 -22.62 16.74 -128.00 -2.14 -24.77 16 9 O -0.98 -25.32 17.27 -128.00 -2.21 -27.53 16 10 C -0.66 -15.59 5.95 22.34 0.13 -15.45 16 11 C -0.02 -0.66 9.50 22.23 0.21 -0.45 16 12 C -0.10 -3.62 9.62 22.54 0.22 -3.40 16 13 C -0.06 -2.39 5.87 -20.10 -0.12 -2.51 16 14 C 0.42 21.73 7.84 70.31 0.55 22.28 16 15 O -0.57 -31.76 15.59 19.81 0.31 -31.45 16 16 O -0.23 -13.20 8.99 11.31 0.10 -13.10 16 17 C -0.42 -25.08 9.65 67.96 0.66 -24.43 16 18 H 0.09 5.20 6.86 -2.91 -0.02 5.18 16 19 C 0.00 -0.01 5.50 84.89 0.47 0.46 16 20 N -0.89 -50.93 13.67 21.63 0.30 -50.64 16 21 Si 1.02 42.08 29.55 68.60 2.03 44.11 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 C -0.09 -2.89 9.60 22.54 0.22 -2.68 16 26 C -0.02 -0.52 9.50 22.23 0.21 -0.30 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.39 2.17 9.05 -74.05 -0.67 1.50 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.78 7.75 -2.39 -0.02 0.76 16 33 H 0.43 4.69 8.65 -96.75 -0.84 3.86 16 34 H 0.17 3.70 7.60 -2.91 -0.02 3.68 16 35 H 0.13 5.16 7.61 -2.91 -0.02 5.13 16 36 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.15 4.47 7.65 -2.91 -0.02 4.44 16 38 H 0.18 2.91 7.60 -2.91 -0.02 2.89 16 Total: -1.00 -81.12 351.85 -1.54 -82.66 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.38 Total: 15.77 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.85 Total: -24.82 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.80 Total: -66.06 kcal Atomic # 8 Polarization: -99.48 SS G_CDS: -5.91 Total: -105.39 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.32 Total: 53.73 kcal Total: -81.12 -1.54 -82.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046446390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.981 kcal (2) G-P(sol) polarization free energy of solvation -81.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds