Wall clock time and date at job start Tue Mar 31 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46783 * 2 1 4 4 C 1.53002 * 109.47317 * 120.00248 * 2 1 3 5 5 O 1.42894 * 109.47043 * 54.99912 * 4 2 1 6 6 N 1.46498 * 109.47461 * 240.00045 * 2 1 3 7 7 S 1.65602 * 119.99612 * 94.72043 * 6 2 1 8 8 O 1.42104 * 106.40175 * 178.81816 * 7 6 2 9 9 O 1.42095 * 106.40656 * 311.73868 * 7 6 2 10 10 C 1.76203 * 107.21635 * 65.28001 * 7 6 2 11 11 C 1.38373 * 119.84633 * 269.71890 * 10 7 6 12 12 C 1.37932 * 120.15337 * 179.76463 * 11 10 7 13 13 C 1.39659 * 119.84230 * 0.53400 * 12 11 10 14 14 C 1.47672 * 120.15148 * 179.70243 * 13 12 11 15 15 O 1.21503 * 119.99964 * 180.02562 * 14 13 12 16 16 O 1.34730 * 119.99687 * 0.02562 * 14 13 12 17 17 C 1.34856 * 116.99893 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99669 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00076 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46716 * 60.00236 * 21 19 17 23 23 H 1.48499 * 109.47737 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47249 * 300.00678 * 21 19 17 25 25 C 1.39668 * 119.69893 * 359.72163 * 13 12 11 26 26 C 1.37934 * 119.84129 * 0.02562 * 25 13 12 27 27 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47308 * 299.99636 * 1 2 3 29 29 H 1.09005 * 109.47224 * 60.00070 * 1 2 3 30 30 H 1.08993 * 109.47055 * 175.00352 * 4 2 1 31 31 H 1.09010 * 109.46683 * 295.00170 * 4 2 1 32 32 H 0.96700 * 113.99946 * 180.02562 * 5 4 2 33 33 H 0.97001 * 120.00384 * 275.00520 * 6 2 1 34 34 H 1.08003 * 119.91968 * 0.02562 * 11 10 7 35 35 H 1.08005 * 120.07251 * 180.23537 * 12 11 10 36 36 H 0.96999 * 120.00463 * 179.97438 * 20 19 17 37 37 H 1.07998 * 120.07542 * 179.97438 * 25 13 12 38 38 H 1.07996 * 119.92111 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.4703 -2.0304 1.3094 6 7 2.0184 -0.6906 -1.1961 7 16 2.4057 0.1767 -2.5527 8 8 2.8666 -0.7644 -3.5126 9 8 1.3171 1.0586 -2.7896 10 6 3.7882 1.1907 -2.1464 11 6 3.5845 2.4646 -1.6458 12 6 4.6621 3.2619 -1.3211 13 6 5.9612 2.7850 -1.5091 14 6 7.1199 3.6353 -1.1699 15 8 8.2489 3.2177 -1.3350 16 8 6.9251 4.8741 -0.6774 17 6 8.0255 5.5980 -0.3880 18 1 9.0068 5.1785 -0.5540 19 6 7.8969 6.8821 0.1232 20 7 6.7029 7.3924 0.3256 21 14 9.4211 7.8851 0.5234 22 1 10.2303 8.0686 -0.7082 23 1 9.0158 9.2122 1.0522 24 1 10.2292 7.1715 1.5448 25 6 6.1595 1.5002 -2.0197 26 6 5.0727 0.7117 -2.3352 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7994 1.2055 31 1 1.7516 -0.1583 2.1370 32 1 1.7500 -2.5461 2.0780 33 1 2.1110 -1.6561 -1.1949 34 1 2.5793 2.8337 -1.5052 35 1 4.5016 4.2546 -0.9270 36 1 6.6131 8.2896 0.6832 37 1 7.1615 1.1254 -2.1679 38 1 5.2245 -0.2818 -2.7305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046447671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:18 Heat of formation + Delta-G solvation = -177.968878 kcal Electronic energy + Delta-G solvation = -25634.299383 eV Core-core repulsion = 21569.380881 eV Total energy + Delta-G solvation = -4064.918503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67330 -38.33421 -38.19495 -37.26082 -35.91581 -35.35548 -35.25195 -32.45573 -31.36768 -30.96027 -30.31071 -26.67136 -25.98855 -24.02869 -22.67315 -21.57862 -20.59440 -19.75058 -18.30496 -17.96385 -17.82208 -17.38143 -17.05591 -16.46122 -15.62594 -15.17986 -14.91416 -14.74154 -14.60865 -14.51856 -14.25812 -14.06715 -13.63540 -13.42907 -13.31202 -12.84757 -12.76002 -12.42713 -12.26271 -12.14853 -12.06976 -11.80271 -11.75051 -11.38329 -11.21454 -11.13808 -10.86464 -10.64343 -10.59918 -10.39364 -10.07077 -9.80963 -9.29333 -9.21621 -8.97257 -8.79616 -6.67453 -4.27421 0.25294 0.59514 1.41643 2.76219 3.00917 3.06146 3.10352 3.20010 3.61013 3.72683 3.90217 4.07061 4.27548 4.29930 4.42378 4.73000 4.84906 4.92367 4.94967 4.97662 5.04563 5.22129 5.36374 5.43777 5.46433 5.68017 5.74858 5.86088 5.91974 5.99883 6.14195 6.17946 6.44353 6.74001 6.78726 6.89328 7.16289 7.24060 7.70003 8.48103 8.80302 9.58277 10.49036 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002918 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.361118 B = 9591.773330 C =10074.797844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.153 3.847 3 H 0.097 0.903 4 C 0.068 3.932 5 O -0.569 6.569 6 N -1.109 6.109 7 S 2.697 3.303 8 O -0.961 6.961 9 O -0.956 6.956 10 C -0.677 4.677 11 C -0.035 4.035 12 C -0.098 4.098 13 C -0.024 4.024 14 C 0.415 3.585 15 O -0.549 6.549 16 O -0.197 6.197 17 C -0.371 4.371 18 H 0.101 0.899 19 C 0.042 3.958 20 N -0.849 5.849 21 Si 0.949 3.051 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.096 4.096 26 C -0.030 4.030 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.381 0.619 33 H 0.422 0.578 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.275 0.725 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -14.551 2.742 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.011 4.011 5 O -0.375 6.375 6 N -0.869 5.869 7 S 2.787 3.213 8 O -0.951 6.951 9 O -0.945 6.945 10 C -0.764 4.764 11 C -0.055 4.055 12 C -0.117 4.117 13 C -0.026 4.026 14 C 0.263 3.737 15 O -0.448 6.448 16 O -0.103 6.103 17 C -0.446 4.446 18 H 0.118 0.882 19 C -0.164 4.164 20 N -0.484 5.484 21 Si 0.773 3.227 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.115 4.115 26 C -0.050 4.050 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.257 0.743 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.960 -14.039 1.444 18.500 hybrid contribution 1.708 0.338 1.219 2.125 sum -10.252 -13.701 2.663 17.318 Atomic orbital electron populations 1.22227 0.94125 1.03442 1.02950 1.20875 0.95658 0.95354 0.83581 0.88529 1.22481 0.97210 0.84304 0.97145 1.86440 1.73005 1.27246 1.50780 1.55569 1.81682 1.19710 1.29915 1.01789 0.73815 0.73281 0.72432 1.93584 1.82345 1.61848 1.57368 1.93586 1.51103 1.66450 1.83398 1.30858 1.16205 1.10952 1.18427 1.20879 0.99988 0.91393 0.93195 1.21757 0.91137 1.00991 0.97796 1.19817 0.92812 0.93618 0.96333 1.20672 0.87911 0.83204 0.81897 1.90644 1.24752 1.74169 1.55253 1.83874 1.37961 1.22834 1.65630 1.21381 0.85546 0.95608 1.42089 0.88175 1.25464 0.99025 0.96041 0.95859 1.69952 1.22424 1.16621 1.39449 0.85646 0.79446 0.78195 0.79413 1.19180 1.20096 1.19205 1.21352 1.00012 0.92712 0.97467 1.20739 0.90449 0.99513 0.94279 0.91161 0.91628 0.91046 0.92523 0.92113 0.77192 0.74272 0.83992 0.83101 0.91463 0.83925 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.32 37.16 0.35 -1.09 16 2 C 0.15 1.29 3.17 -67.93 -0.22 1.07 16 3 H 0.10 0.76 7.27 -51.93 -0.38 0.38 16 4 C 0.07 0.46 6.84 37.16 0.25 0.72 16 5 O -0.57 -3.78 12.49 -35.23 -0.44 -4.22 16 6 N -1.11 -10.14 5.47 -4.89 -0.03 -10.17 16 7 S 2.70 32.54 5.65 -107.50 -0.61 31.93 16 8 O -0.96 -13.84 17.27 -57.17 -0.99 -14.83 16 9 O -0.96 -13.61 16.49 -57.17 -0.94 -14.55 16 10 C -0.68 -9.08 5.84 -39.48 -0.23 -9.31 16 11 C -0.04 -0.50 8.91 -39.64 -0.35 -0.85 16 12 C -0.10 -1.68 9.62 -39.16 -0.38 -2.05 16 13 C -0.02 -0.47 5.87 -104.98 -0.62 -1.08 16 14 C 0.41 10.19 7.84 34.58 0.27 10.46 16 15 O -0.55 -14.55 15.59 -19.27 -0.30 -14.86 16 16 O -0.20 -5.40 8.99 -21.64 -0.19 -5.59 16 17 C -0.37 -10.47 9.65 30.94 0.30 -10.17 16 18 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 19 C 0.04 1.13 5.50 -17.52 -0.10 1.03 16 20 N -0.85 -23.33 13.67 55.49 0.76 -22.57 16 21 Si 0.95 20.11 29.55 -169.99 -5.02 15.08 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.10 -1.60 9.60 -39.16 -0.38 -1.97 16 26 C -0.03 -0.42 9.50 -39.64 -0.38 -0.80 16 27 H 0.07 0.62 7.56 -51.93 -0.39 0.22 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.69 7.61 -51.93 -0.40 0.30 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.38 1.02 9.12 45.56 0.42 1.44 16 33 H 0.42 3.34 8.58 -34.47 -0.30 3.04 16 34 H 0.14 1.65 7.60 -52.48 -0.40 1.25 16 35 H 0.15 2.69 7.61 -52.48 -0.40 2.29 16 36 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.14 2.29 7.65 -52.49 -0.40 1.89 16 38 H 0.14 1.61 7.60 -52.49 -0.40 1.21 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -35.68 348.32 -7.39 -43.07 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.41 Total: 5.51 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.47 Total: -14.05 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.73 Total: -32.74 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.86 Total: -54.05 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 32.54 SS G_CDS: -0.61 Total: 31.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.68 -7.39 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046447671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.896 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds