Wall clock time and date at job start Tue Mar 31 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46783 * 2 1 4 4 C 1.53002 * 109.47317 * 120.00248 * 2 1 3 5 5 O 1.42894 * 109.47043 * 54.99912 * 4 2 1 6 6 N 1.46498 * 109.47461 * 240.00045 * 2 1 3 7 7 S 1.65602 * 119.99612 * 94.72043 * 6 2 1 8 8 O 1.42104 * 106.40175 * 178.81816 * 7 6 2 9 9 O 1.42095 * 106.40656 * 311.73868 * 7 6 2 10 10 C 1.76203 * 107.21635 * 65.28001 * 7 6 2 11 11 C 1.38373 * 119.84633 * 269.71890 * 10 7 6 12 12 C 1.37932 * 120.15337 * 179.76463 * 11 10 7 13 13 C 1.39659 * 119.84230 * 0.53400 * 12 11 10 14 14 C 1.47672 * 120.15148 * 179.70243 * 13 12 11 15 15 O 1.21503 * 119.99964 * 180.02562 * 14 13 12 16 16 O 1.34730 * 119.99687 * 0.02562 * 14 13 12 17 17 C 1.34856 * 116.99893 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99669 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00076 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46716 * 60.00236 * 21 19 17 23 23 H 1.48499 * 109.47737 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47249 * 300.00678 * 21 19 17 25 25 C 1.39668 * 119.69893 * 359.72163 * 13 12 11 26 26 C 1.37934 * 119.84129 * 0.02562 * 25 13 12 27 27 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47308 * 299.99636 * 1 2 3 29 29 H 1.09005 * 109.47224 * 60.00070 * 1 2 3 30 30 H 1.08993 * 109.47055 * 175.00352 * 4 2 1 31 31 H 1.09010 * 109.46683 * 295.00170 * 4 2 1 32 32 H 0.96700 * 113.99946 * 180.02562 * 5 4 2 33 33 H 0.97001 * 120.00384 * 275.00520 * 6 2 1 34 34 H 1.08003 * 119.91968 * 0.02562 * 11 10 7 35 35 H 1.08005 * 120.07251 * 180.23537 * 12 11 10 36 36 H 0.96999 * 120.00463 * 179.97438 * 20 19 17 37 37 H 1.07998 * 120.07542 * 179.97438 * 25 13 12 38 38 H 1.07996 * 119.92111 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.4703 -2.0304 1.3094 6 7 2.0184 -0.6906 -1.1961 7 16 2.4057 0.1767 -2.5527 8 8 2.8666 -0.7644 -3.5126 9 8 1.3171 1.0586 -2.7896 10 6 3.7882 1.1907 -2.1464 11 6 3.5845 2.4646 -1.6458 12 6 4.6621 3.2619 -1.3211 13 6 5.9612 2.7850 -1.5091 14 6 7.1199 3.6353 -1.1699 15 8 8.2489 3.2177 -1.3350 16 8 6.9251 4.8741 -0.6774 17 6 8.0255 5.5980 -0.3880 18 1 9.0068 5.1785 -0.5540 19 6 7.8969 6.8821 0.1232 20 7 6.7029 7.3924 0.3256 21 14 9.4211 7.8851 0.5234 22 1 10.2303 8.0686 -0.7082 23 1 9.0158 9.2122 1.0522 24 1 10.2292 7.1715 1.5448 25 6 6.1595 1.5002 -2.0197 26 6 5.0727 0.7117 -2.3352 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.1263 -0.7994 1.2055 31 1 1.7516 -0.1583 2.1370 32 1 1.7500 -2.5461 2.0780 33 1 2.1110 -1.6561 -1.1949 34 1 2.5793 2.8337 -1.5052 35 1 4.5016 4.2546 -0.9270 36 1 6.6131 8.2896 0.6832 37 1 7.1615 1.1254 -2.1679 38 1 5.2245 -0.2818 -2.7305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046447671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:18 Heat of formation + Delta-G solvation = -207.047300 kcal Electronic energy + Delta-G solvation = -25635.560318 eV Core-core repulsion = 21569.380881 eV Total energy + Delta-G solvation = -4066.179437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42282 -39.85886 -38.85923 -38.29590 -37.36853 -37.00555 -35.87087 -34.45032 -32.79030 -32.25310 -31.02312 -27.91651 -27.22929 -25.62123 -23.95894 -22.29150 -22.21206 -20.74092 -20.00180 -19.40130 -19.02995 -18.44701 -18.04835 -17.30396 -17.23396 -16.72866 -16.54301 -16.15669 -15.85759 -15.65810 -15.35704 -15.02994 -14.76460 -14.60424 -14.31655 -14.17148 -14.02689 -13.65052 -13.42464 -13.24280 -13.23096 -13.14423 -13.05475 -12.48435 -12.47615 -12.41900 -12.19664 -12.17001 -12.09933 -11.77454 -11.28120 -10.85178 -10.79743 -10.64936 -10.51774 -10.22793 -8.65110 -6.41754 -0.91750 -0.62065 0.14060 1.25618 1.32116 1.48182 1.52850 1.96250 2.02176 2.43182 2.53579 2.68843 2.93957 3.21247 3.43637 3.63775 3.75945 3.80918 4.09378 4.13004 4.15851 4.36157 4.42374 4.45456 4.46375 4.69894 4.77445 4.80350 4.86693 4.92959 5.03809 5.08884 5.25022 5.26868 5.48852 5.58954 5.70390 6.09428 6.46854 6.78639 6.96917 7.57598 8.54268 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002918 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.361118 B = 9591.773330 C =10074.797844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.139 3.861 3 H 0.104 0.896 4 C 0.070 3.930 5 O -0.583 6.583 6 N -1.094 6.094 7 S 2.723 3.277 8 O -0.978 6.978 9 O -0.972 6.972 10 C -0.661 4.661 11 C -0.026 4.026 12 C -0.098 4.098 13 C -0.059 4.059 14 C 0.419 3.581 15 O -0.574 6.574 16 O -0.223 6.223 17 C -0.422 4.422 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.889 5.889 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.260 1.260 25 C -0.093 4.093 26 C -0.021 4.021 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.398 0.602 33 H 0.431 0.569 34 H 0.172 0.828 35 H 0.137 0.863 36 H 0.284 0.716 37 H 0.145 0.855 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 -15.975 3.076 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.121 0.879 4 C -0.010 4.010 5 O -0.391 6.391 6 N -0.858 5.858 7 S 2.811 3.189 8 O -0.969 6.969 9 O -0.961 6.961 10 C -0.747 4.747 11 C -0.045 4.045 12 C -0.118 4.118 13 C -0.060 4.060 14 C 0.269 3.731 15 O -0.474 6.474 16 O -0.130 6.130 17 C -0.497 4.497 18 H 0.103 0.897 19 C -0.200 4.200 20 N -0.524 5.524 21 Si 0.837 3.163 22 H -0.186 1.186 23 H -0.180 1.180 24 H -0.184 1.184 25 C -0.112 4.112 26 C -0.040 4.040 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.268 0.732 34 H 0.189 0.811 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.141 -15.489 1.782 20.390 hybrid contribution 1.854 0.472 1.049 2.182 sum -11.286 -15.017 2.832 18.997 Atomic orbital electron populations 1.22212 0.94155 1.03247 1.03036 1.21158 0.95758 0.96025 0.83811 0.87859 1.22444 0.97233 0.84576 0.96700 1.86395 1.73263 1.27337 1.52116 1.55292 1.80985 1.19986 1.29499 1.01057 0.72827 0.72557 0.72439 1.93563 1.82513 1.62056 1.58721 1.93574 1.51291 1.67284 1.83994 1.31324 1.16937 1.10729 1.15686 1.21131 1.00283 0.91117 0.91954 1.21678 0.91136 1.00955 0.97989 1.19680 0.91802 0.94448 1.00107 1.21685 0.89238 0.82690 0.79502 1.90594 1.26492 1.74557 1.55794 1.83898 1.37931 1.24049 1.67152 1.21534 0.85355 0.97167 1.45648 0.89672 1.26594 1.02633 0.96242 0.94543 1.70022 1.24534 1.17455 1.40433 0.84662 0.75209 0.76962 0.79419 1.18648 1.18046 1.18396 1.21455 1.01215 0.91663 0.96867 1.21074 0.89597 1.00348 0.92961 0.91481 0.90175 0.92377 0.92284 0.90620 0.75214 0.73186 0.81084 0.84464 0.90678 0.83759 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.32 71.98 0.67 -1.78 16 2 C 0.14 1.94 3.17 44.99 0.14 2.09 16 3 H 0.10 1.30 7.27 -2.39 -0.02 1.28 16 4 C 0.07 0.74 6.84 71.98 0.49 1.23 16 5 O -0.58 -6.07 12.49 -148.98 -1.86 -7.93 16 6 N -1.09 -16.70 5.47 -169.38 -0.93 -17.62 16 7 S 2.72 57.56 5.65 -56.49 -0.32 57.24 16 8 O -0.98 -25.12 17.27 -128.00 -2.21 -27.33 16 9 O -0.97 -25.00 16.49 -128.00 -2.11 -27.11 16 10 C -0.66 -15.91 5.84 22.34 0.13 -15.78 16 11 C -0.03 -0.68 8.91 22.23 0.20 -0.48 16 12 C -0.10 -3.38 9.62 22.54 0.22 -3.17 16 13 C -0.06 -2.34 5.87 -20.10 -0.12 -2.46 16 14 C 0.42 21.62 7.84 70.31 0.55 22.17 16 15 O -0.57 -31.88 15.59 19.83 0.31 -31.57 16 16 O -0.22 -12.95 8.99 11.34 0.10 -12.85 16 17 C -0.42 -25.10 9.65 67.96 0.66 -24.44 16 18 H 0.09 5.13 6.86 -2.91 -0.02 5.11 16 19 C 0.00 0.12 5.50 84.89 0.47 0.59 16 20 N -0.89 -50.25 13.67 21.63 0.30 -49.95 16 21 Si 1.02 41.72 29.55 68.60 2.03 43.74 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.09 -3.01 9.60 22.54 0.22 -2.79 16 26 C -0.02 -0.53 9.50 22.23 0.21 -0.32 16 27 H 0.07 1.02 7.56 -2.39 -0.02 1.00 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.01 7.61 -2.38 -0.02 0.99 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.40 1.03 9.12 -74.06 -0.68 0.36 16 33 H 0.43 5.44 8.58 -96.74 -0.83 4.61 16 34 H 0.17 3.49 7.60 -2.91 -0.02 3.47 16 35 H 0.14 5.09 7.61 -2.91 -0.02 5.07 16 36 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.14 4.58 7.65 -2.91 -0.02 4.55 16 38 H 0.17 3.30 7.60 -2.91 -0.02 3.27 16 Total: -1.00 -79.89 348.32 -1.23 -81.12 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.38 Total: 17.41 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 3.83 Total: -25.14 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.63 Total: -67.58 kcal Atomic # 8 Polarization: -101.03 SS G_CDS: -5.77 Total: -106.80 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 57.56 SS G_CDS: -0.32 Total: 57.24 kcal Total: -79.89 -1.23 -81.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046447671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.925 kcal (2) G-P(sol) polarization free energy of solvation -79.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds