Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47479 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00013 * 2 1 3 5 5 O 1.42903 * 109.47256 * 305.00584 * 4 2 1 6 6 N 1.46497 * 109.46869 * 120.00121 * 2 1 3 7 7 S 1.65596 * 120.00124 * 264.99825 * 6 2 1 8 8 O 1.42104 * 106.40493 * 178.53944 * 7 6 2 9 9 O 1.42100 * 106.40181 * 311.46256 * 7 6 2 10 10 C 1.76203 * 107.21993 * 64.99954 * 7 6 2 11 11 C 1.38374 * 119.84679 * 269.73109 * 10 7 6 12 12 C 1.37931 * 120.15507 * 179.76581 * 11 10 7 13 13 C 1.39668 * 119.84131 * 0.52068 * 12 11 10 14 14 C 1.47660 * 120.14985 * 179.70429 * 13 12 11 15 15 O 1.21514 * 119.99710 * 180.02562 * 14 13 12 16 16 O 1.34734 * 120.00378 * 0.02791 * 14 13 12 17 17 C 1.34856 * 117.00087 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99888 * 0.02562 * 17 16 14 19 19 C 1.38808 * 119.99671 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00501 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46987 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47303 * 119.99942 * 21 19 17 24 24 H 1.48494 * 109.47596 * 240.00293 * 21 19 17 25 25 C 1.39668 * 119.69662 * 359.73364 * 13 12 11 26 26 C 1.37934 * 119.84125 * 359.97438 * 25 13 12 27 27 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46813 * 300.00368 * 1 2 3 29 29 H 1.09003 * 109.46624 * 59.99758 * 1 2 3 30 30 H 1.08997 * 109.47286 * 185.00144 * 4 2 1 31 31 H 1.09008 * 109.47201 * 64.99925 * 4 2 1 32 32 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 33 33 H 0.97002 * 120.00191 * 84.99947 * 6 2 1 34 34 H 1.08002 * 119.91981 * 0.02562 * 11 10 7 35 35 H 1.07998 * 120.07813 * 180.23274 * 12 11 10 36 36 H 0.97001 * 120.00382 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.07911 * 179.97438 * 25 13 12 38 38 H 1.08001 * 119.92132 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 16 2.4121 0.1771 2.5505 8 8 2.8123 -0.7699 3.5315 9 8 3.2436 1.2442 2.1156 10 6 0.9275 0.9147 3.1474 11 6 0.5572 2.1725 2.7051 12 6 -0.6061 2.7539 3.1645 13 6 -1.4055 2.0746 4.0866 14 6 -2.6489 2.6934 4.5879 15 8 -3.3420 2.1001 5.3905 16 8 -3.0150 3.9158 4.1555 17 6 -4.1615 4.4230 4.6524 18 1 -4.7403 3.8531 5.3641 19 6 -4.5971 5.6780 4.2497 20 7 -3.8920 6.3721 3.3848 21 14 -6.1856 6.3804 4.9373 22 1 -6.7863 5.4090 5.8865 23 1 -5.8979 7.6524 5.6475 24 1 -7.1352 6.6382 3.8252 25 6 -1.0230 0.8076 4.5328 26 6 0.1399 0.2356 4.0603 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1263 -0.7995 -1.2056 31 1 1.7517 -0.1583 -2.1370 32 1 1.7505 -2.5464 -2.0778 33 1 2.1109 -1.6562 1.1949 34 1 1.1785 2.6984 1.9953 35 1 -0.8958 3.7341 2.8156 36 1 -4.1962 7.2492 3.1037 37 1 -1.6362 0.2770 5.2460 38 1 0.4367 -0.7442 4.4042 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046447673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -177.375143 kcal Electronic energy + Delta-G solvation = -25757.997899 eV Core-core repulsion = 21693.105143 eV Total energy + Delta-G solvation = -4064.892756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64878 -38.35148 -38.16395 -37.27400 -35.93296 -35.34286 -35.26033 -32.42848 -31.34627 -30.93717 -30.27952 -26.68302 -25.95615 -23.99144 -22.61675 -21.58502 -20.56397 -19.74629 -18.35967 -17.93744 -17.77508 -17.41201 -17.07361 -16.39747 -15.62099 -15.17111 -14.89047 -14.71490 -14.66914 -14.47178 -14.25298 -14.03839 -13.51666 -13.41254 -13.36094 -13.02031 -12.55461 -12.42835 -12.28212 -12.17717 -12.10990 -11.77318 -11.67079 -11.39241 -11.18579 -11.10860 -10.89167 -10.64506 -10.52172 -10.41741 -10.02841 -9.80576 -9.26728 -9.15972 -8.92756 -8.78005 -6.65268 -4.25034 0.26870 0.62674 1.45890 2.76610 2.99706 3.08354 3.16056 3.21024 3.65165 3.75219 3.84705 4.09844 4.27270 4.32558 4.44209 4.71150 4.87969 4.94295 4.97208 4.97882 5.06974 5.21230 5.35298 5.46829 5.49855 5.68414 5.78304 5.89465 5.92759 6.03623 6.18870 6.21473 6.47803 6.76942 6.79272 6.92875 7.19480 7.22525 7.72621 8.50973 8.82913 9.61121 10.51466 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002954 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.295490 B = 9477.605124 C =10032.492739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.104 0.896 4 C 0.073 3.927 5 O -0.568 6.568 6 N -1.109 6.109 7 S 2.698 3.302 8 O -0.961 6.961 9 O -0.959 6.959 10 C -0.674 4.674 11 C -0.032 4.032 12 C -0.098 4.098 13 C -0.024 4.024 14 C 0.416 3.584 15 O -0.549 6.549 16 O -0.198 6.198 17 C -0.369 4.369 18 H 0.101 0.899 19 C 0.042 3.958 20 N -0.850 5.850 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.096 4.096 26 C -0.029 4.029 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.380 0.620 33 H 0.422 0.578 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.274 0.726 37 H 0.143 0.857 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 -12.406 -10.900 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 H 0.122 0.878 4 C -0.007 4.007 5 O -0.374 6.374 6 N -0.869 5.869 7 S 2.788 3.212 8 O -0.951 6.951 9 O -0.949 6.949 10 C -0.762 4.762 11 C -0.052 4.052 12 C -0.117 4.117 13 C -0.026 4.026 14 C 0.264 3.736 15 O -0.448 6.448 16 O -0.104 6.104 17 C -0.445 4.445 18 H 0.119 0.881 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.115 4.115 26 C -0.048 4.048 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.257 0.743 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.160 0.840 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.245 -11.819 -9.905 19.691 hybrid contribution -1.277 0.055 -0.200 1.294 sum 10.969 -11.764 -10.106 18.995 Atomic orbital electron populations 1.22299 0.94203 1.03808 1.03026 1.20953 0.95353 0.95922 0.83687 0.87812 1.22418 0.96952 0.84318 0.97011 1.86475 1.72964 1.27203 1.50732 1.55545 1.83792 1.20214 1.27307 1.01703 0.73788 0.73291 0.72409 1.93585 1.81127 1.61962 1.58458 1.93581 1.63762 1.55991 1.81602 1.30799 1.24204 1.07568 1.13629 1.20831 0.95355 0.92234 0.96765 1.21739 0.93408 1.00914 0.95614 1.19805 0.93185 0.94148 0.95426 1.20686 0.86471 0.82786 0.83641 1.90649 1.54681 1.63944 1.35513 1.83877 1.39581 1.27988 1.58955 1.21472 0.97210 1.00780 1.25030 0.88097 1.25464 0.99779 0.95105 0.96105 1.69972 1.37713 1.12210 1.28596 0.85532 0.79401 0.79009 0.78900 1.18692 1.19897 1.19892 1.21340 0.96362 0.94209 0.99596 1.20722 0.92402 0.98891 0.92834 0.90863 0.91597 0.91365 0.92695 0.92125 0.77265 0.74285 0.84116 0.83158 0.91608 0.83968 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.32 37.16 0.35 -1.28 16 2 C 0.15 1.23 3.31 -67.93 -0.23 1.01 16 3 H 0.10 0.80 7.50 -51.93 -0.39 0.41 16 4 C 0.07 0.45 6.84 37.16 0.25 0.70 16 5 O -0.57 -3.67 12.49 -35.23 -0.44 -4.11 16 6 N -1.11 -10.09 5.46 -4.90 -0.03 -10.11 16 7 S 2.70 32.52 5.72 -107.50 -0.61 31.91 16 8 O -0.96 -13.81 17.27 -57.17 -0.99 -14.80 16 9 O -0.96 -13.55 16.60 -57.17 -0.95 -14.50 16 10 C -0.67 -9.17 5.06 -39.48 -0.20 -9.37 16 11 C -0.03 -0.46 8.58 -39.64 -0.34 -0.80 16 12 C -0.10 -1.70 9.62 -39.16 -0.38 -2.07 16 13 C -0.02 -0.47 5.87 -104.98 -0.62 -1.09 16 14 C 0.42 10.33 7.84 34.58 0.27 10.60 16 15 O -0.55 -14.72 15.59 -19.28 -0.30 -15.02 16 16 O -0.20 -5.47 8.99 -21.65 -0.19 -5.67 16 17 C -0.37 -10.52 9.65 30.94 0.30 -10.22 16 18 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 19 C 0.04 1.11 5.50 -17.52 -0.10 1.02 16 20 N -0.85 -23.52 13.67 55.49 0.76 -22.76 16 21 Si 0.95 20.30 29.55 -169.99 -5.02 15.27 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.10 -1.62 9.60 -39.16 -0.38 -1.99 16 26 C -0.03 -0.41 9.50 -39.64 -0.38 -0.79 16 27 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 28 H 0.07 0.71 6.18 -51.93 -0.32 0.39 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 32 H 0.38 0.86 9.12 45.56 0.42 1.28 16 33 H 0.42 3.32 8.58 -34.46 -0.30 3.02 16 34 H 0.14 1.66 7.60 -52.49 -0.40 1.26 16 35 H 0.15 2.72 7.61 -52.49 -0.40 2.32 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.14 2.33 7.65 -52.49 -0.40 1.93 16 38 H 0.14 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -36.06 346.35 -7.34 -43.40 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.34 Total: 5.48 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.44 Total: -14.30 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.73 Total: -32.88 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -2.87 Total: -54.10 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 32.52 SS G_CDS: -0.61 Total: 31.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.06 -7.34 -43.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046447673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.974 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds