Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47479 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00013 * 2 1 3 5 5 O 1.42903 * 109.47256 * 305.00584 * 4 2 1 6 6 N 1.46497 * 109.46869 * 120.00121 * 2 1 3 7 7 S 1.65596 * 120.00124 * 264.99825 * 6 2 1 8 8 O 1.42104 * 106.40493 * 178.53944 * 7 6 2 9 9 O 1.42100 * 106.40181 * 311.46256 * 7 6 2 10 10 C 1.76203 * 107.21993 * 64.99954 * 7 6 2 11 11 C 1.38374 * 119.84679 * 269.73109 * 10 7 6 12 12 C 1.37931 * 120.15507 * 179.76581 * 11 10 7 13 13 C 1.39668 * 119.84131 * 0.52068 * 12 11 10 14 14 C 1.47660 * 120.14985 * 179.70429 * 13 12 11 15 15 O 1.21514 * 119.99710 * 180.02562 * 14 13 12 16 16 O 1.34734 * 120.00378 * 0.02791 * 14 13 12 17 17 C 1.34856 * 117.00087 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99888 * 0.02562 * 17 16 14 19 19 C 1.38808 * 119.99671 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00501 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46987 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47303 * 119.99942 * 21 19 17 24 24 H 1.48494 * 109.47596 * 240.00293 * 21 19 17 25 25 C 1.39668 * 119.69662 * 359.73364 * 13 12 11 26 26 C 1.37934 * 119.84125 * 359.97438 * 25 13 12 27 27 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46813 * 300.00368 * 1 2 3 29 29 H 1.09003 * 109.46624 * 59.99758 * 1 2 3 30 30 H 1.08997 * 109.47286 * 185.00144 * 4 2 1 31 31 H 1.09008 * 109.47201 * 64.99925 * 4 2 1 32 32 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 33 33 H 0.97002 * 120.00191 * 84.99947 * 6 2 1 34 34 H 1.08002 * 119.91981 * 0.02562 * 11 10 7 35 35 H 1.07998 * 120.07813 * 180.23274 * 12 11 10 36 36 H 0.97001 * 120.00382 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.07911 * 179.97438 * 25 13 12 38 38 H 1.08001 * 119.92132 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 16 2.4121 0.1771 2.5505 8 8 2.8123 -0.7699 3.5315 9 8 3.2436 1.2442 2.1156 10 6 0.9275 0.9147 3.1474 11 6 0.5572 2.1725 2.7051 12 6 -0.6061 2.7539 3.1645 13 6 -1.4055 2.0746 4.0866 14 6 -2.6489 2.6934 4.5879 15 8 -3.3420 2.1001 5.3905 16 8 -3.0150 3.9158 4.1555 17 6 -4.1615 4.4230 4.6524 18 1 -4.7403 3.8531 5.3641 19 6 -4.5971 5.6780 4.2497 20 7 -3.8920 6.3721 3.3848 21 14 -6.1856 6.3804 4.9373 22 1 -6.7863 5.4090 5.8865 23 1 -5.8979 7.6524 5.6475 24 1 -7.1352 6.6382 3.8252 25 6 -1.0230 0.8076 4.5328 26 6 0.1399 0.2356 4.0603 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1263 -0.7995 -1.2056 31 1 1.7517 -0.1583 -2.1370 32 1 1.7505 -2.5464 -2.0778 33 1 2.1109 -1.6562 1.1949 34 1 1.1785 2.6984 1.9953 35 1 -0.8958 3.7341 2.8156 36 1 -4.1962 7.2492 3.1037 37 1 -1.6362 0.2770 5.2460 38 1 0.4367 -0.7442 4.4042 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046447673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -206.990162 kcal Electronic energy + Delta-G solvation = -25759.282102 eV Core-core repulsion = 21693.105143 eV Total energy + Delta-G solvation = -4066.176960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42260 -39.86654 -38.84551 -38.30542 -37.37003 -37.02072 -35.88135 -34.45119 -32.78672 -32.24895 -31.01883 -27.92301 -27.23677 -25.60527 -23.93556 -22.29842 -22.19395 -20.72899 -20.00581 -19.43747 -19.04739 -18.43986 -18.03969 -17.28047 -17.23140 -16.72973 -16.52717 -16.15751 -15.85046 -15.63203 -15.44132 -14.98124 -14.76191 -14.60980 -14.34625 -14.13442 -14.07894 -13.65382 -13.36320 -13.28623 -13.21528 -13.18643 -13.12563 -12.49273 -12.47173 -12.40003 -12.21698 -12.12092 -12.05535 -11.85602 -11.28596 -10.82672 -10.79774 -10.66319 -10.46534 -10.20924 -8.65572 -6.41993 -0.90262 -0.60822 0.15701 1.24262 1.31956 1.50437 1.51583 1.94881 2.02103 2.43377 2.53728 2.70440 2.93527 3.19159 3.45987 3.64529 3.76663 3.84883 4.08726 4.14121 4.16919 4.35752 4.44632 4.46171 4.47350 4.69733 4.78115 4.80247 4.87478 4.93542 4.97207 5.09345 5.23643 5.26466 5.45885 5.60151 5.70505 6.09989 6.46775 6.78488 7.00572 7.57587 8.54370 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002954 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.295490 B = 9477.605124 C =10032.492739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 H 0.113 0.887 4 C 0.075 3.925 5 O -0.586 6.586 6 N -1.093 6.093 7 S 2.726 3.274 8 O -0.978 6.978 9 O -0.972 6.972 10 C -0.661 4.661 11 C -0.023 4.023 12 C -0.098 4.098 13 C -0.059 4.059 14 C 0.420 3.580 15 O -0.575 6.575 16 O -0.224 6.224 17 C -0.420 4.420 18 H 0.084 0.916 19 C 0.001 3.999 20 N -0.889 5.889 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.258 1.258 24 H -0.256 1.256 25 C -0.094 4.094 26 C -0.021 4.021 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.398 0.602 33 H 0.431 0.569 34 H 0.172 0.828 35 H 0.137 0.863 36 H 0.283 0.717 37 H 0.143 0.857 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 -13.493 -12.278 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.031 3.969 3 H 0.131 0.869 4 C -0.005 4.005 5 O -0.395 6.395 6 N -0.857 5.857 7 S 2.813 3.187 8 O -0.968 6.968 9 O -0.962 6.962 10 C -0.746 4.746 11 C -0.042 4.042 12 C -0.118 4.118 13 C -0.061 4.061 14 C 0.269 3.731 15 O -0.475 6.475 16 O -0.131 6.131 17 C -0.495 4.495 18 H 0.102 0.898 19 C -0.201 4.201 20 N -0.525 5.525 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.182 1.182 24 H -0.180 1.180 25 C -0.113 4.113 26 C -0.040 4.040 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.248 0.752 33 H 0.268 0.732 34 H 0.189 0.811 35 H 0.154 0.846 36 H 0.093 0.907 37 H 0.161 0.839 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 13.850 -12.924 -11.292 22.054 hybrid contribution -1.530 0.136 0.118 1.540 sum 12.321 -12.788 -11.174 20.981 Atomic orbital electron populations 1.22288 0.95123 1.03246 1.02674 1.21219 0.94640 0.96881 0.84198 0.86889 1.22408 0.97435 0.84373 0.96275 1.86423 1.73382 1.27512 1.52154 1.55280 1.83372 1.20611 1.26400 1.00975 0.72707 0.72663 0.72339 1.93565 1.81160 1.62217 1.59848 1.93570 1.63806 1.56974 1.81866 1.31342 1.24250 1.06994 1.12030 1.21089 0.94146 0.92426 0.96510 1.21657 0.94316 1.00459 0.95334 1.19662 0.92256 0.95861 0.98291 1.21699 0.87351 0.81794 0.82207 1.90596 1.56039 1.64349 1.36527 1.83901 1.39870 1.29303 1.60006 1.21596 0.98525 1.02287 1.27119 0.89779 1.26603 1.03201 0.94467 0.95813 1.70037 1.39678 1.12975 1.29779 0.84537 0.74741 0.78295 0.78595 1.18901 1.18233 1.18042 1.21434 0.97347 0.93037 0.99473 1.21046 0.90974 0.99907 0.92049 0.91498 0.93383 0.90367 0.91592 0.90347 0.75174 0.73179 0.81108 0.84553 0.90694 0.83933 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.32 71.98 0.67 -2.22 16 2 C 0.14 1.87 3.31 44.99 0.15 2.02 16 3 H 0.11 1.36 7.50 -2.39 -0.02 1.34 16 4 C 0.07 0.67 6.84 71.98 0.49 1.16 16 5 O -0.59 -5.81 12.49 -148.98 -1.86 -7.67 16 6 N -1.09 -16.41 5.46 -169.40 -0.93 -17.34 16 7 S 2.73 57.28 5.72 -56.49 -0.32 56.96 16 8 O -0.98 -24.99 17.27 -128.00 -2.21 -27.20 16 9 O -0.97 -24.31 16.60 -128.00 -2.12 -26.43 16 10 C -0.66 -16.43 5.06 22.34 0.11 -16.32 16 11 C -0.02 -0.62 8.58 22.23 0.19 -0.43 16 12 C -0.10 -3.48 9.62 22.54 0.22 -3.26 16 13 C -0.06 -2.41 5.87 -20.10 -0.12 -2.53 16 14 C 0.42 22.09 7.84 70.31 0.55 22.64 16 15 O -0.58 -32.57 15.59 19.79 0.31 -32.27 16 16 O -0.22 -13.17 8.99 11.30 0.10 -13.07 16 17 C -0.42 -25.32 9.65 67.96 0.66 -24.66 16 18 H 0.08 5.17 6.86 -2.91 -0.02 5.15 16 19 C 0.00 0.07 5.50 84.89 0.47 0.54 16 20 N -0.89 -50.71 13.67 21.63 0.30 -50.42 16 21 Si 1.02 42.29 29.55 68.60 2.03 44.31 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 C -0.09 -3.15 9.60 22.54 0.22 -2.93 16 26 C -0.02 -0.55 9.50 22.23 0.21 -0.34 16 27 H 0.07 1.19 7.56 -2.39 -0.02 1.17 16 28 H 0.05 0.95 6.18 -2.39 -0.01 0.94 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.40 0.63 9.12 -74.06 -0.68 -0.05 16 33 H 0.43 5.34 8.58 -96.75 -0.83 4.51 16 34 H 0.17 3.57 7.60 -2.91 -0.02 3.55 16 35 H 0.14 5.18 7.61 -2.91 -0.02 5.16 16 36 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.14 4.72 7.65 -2.91 -0.02 4.70 16 38 H 0.17 3.48 7.60 -2.91 -0.02 3.46 16 Total: -1.00 -81.14 346.35 -1.27 -82.41 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.37 Total: 17.06 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.82 Total: -26.35 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.63 Total: -67.75 kcal Atomic # 8 Polarization: -100.86 SS G_CDS: -5.78 Total: -106.64 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 57.28 SS G_CDS: -0.32 Total: 56.96 kcal Total: -81.14 -1.27 -82.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046447673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.581 kcal (2) G-P(sol) polarization free energy of solvation -81.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds