Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86805 * 119.99661 * 2 1 4 4 H 1.48497 * 109.47032 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.47210 * 30.00217 * 3 2 1 6 6 H 1.48500 * 109.46681 * 150.00062 * 3 2 1 7 7 C 1.38794 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99883 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00156 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99861 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99846 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47141 * 180.02562 * 14 13 11 16 16 S 1.81398 * 109.47178 * 180.02562 * 15 14 13 17 17 O 1.42095 * 110.54225 * 68.37635 * 16 15 14 18 18 O 1.42100 * 110.54081 * 291.62780 * 16 15 14 19 19 C 1.76199 * 104.44793 * 180.02562 * 16 15 14 20 20 C 1.38237 * 119.99920 * 90.00439 * 19 16 15 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00031 * 269.97621 * 19 16 15 25 25 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47265 * 60.00682 * 10 9 7 27 27 H 1.09002 * 109.47368 * 300.00118 * 10 9 7 28 28 H 0.97002 * 119.99995 * 0.02562 * 13 11 10 29 29 H 1.09003 * 109.46583 * 60.00602 * 14 13 11 30 30 H 1.09002 * 109.47191 * 300.00564 * 14 13 11 31 31 H 1.09004 * 109.46514 * 60.00207 * 15 14 13 32 32 H 1.08994 * 109.47457 * 300.00479 * 15 14 13 33 33 H 1.08005 * 120.00088 * 359.96860 * 20 19 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 37 37 H 1.07999 * 119.99990 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0018 14 6 2.3307 -7.7150 -0.0019 15 6 3.5028 -8.6985 -0.0020 16 16 2.8667 -10.3973 -0.0028 17 8 2.2330 -10.6918 -1.2400 18 8 2.2323 -10.6928 1.2339 19 6 4.3105 -11.4073 -0.0021 20 6 4.8761 -11.8038 1.1953 21 6 6.0091 -12.5958 1.1958 22 6 6.5759 -12.9921 -0.0010 23 6 6.0132 -12.5915 -1.1984 24 6 4.8774 -11.8036 -1.1990 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7313 0.8895 27 1 3.1247 -3.7312 -0.8905 28 1 3.8012 -6.1833 -0.0015 29 1 1.7218 -7.8749 -0.8917 30 1 1.7224 -7.8753 0.8883 31 1 4.1114 -8.5384 0.8881 32 1 4.1114 -8.5383 -0.8919 33 1 4.4332 -11.4942 2.1305 34 1 6.4511 -12.9052 2.1313 35 1 7.4609 -13.6111 -0.0006 36 1 6.4586 -12.8974 -2.1335 37 1 4.4355 -11.4938 -2.1345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049035893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = -78.607498 kcal Electronic energy + Delta-G solvation = -21863.218616 eV Core-core repulsion = 18245.361617 eV Total energy + Delta-G solvation = -3617.856999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.059 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.62090 -39.29181 -37.48896 -36.32232 -35.39686 -32.44817 -31.89656 -31.57487 -31.53031 -28.83705 -25.52714 -24.19994 -23.28703 -23.23294 -20.68300 -19.44006 -18.43736 -17.93105 -16.94021 -16.64459 -16.54635 -16.02838 -15.82733 -15.76680 -15.11560 -15.04292 -14.82137 -14.35364 -14.07719 -13.98202 -13.56450 -13.30984 -12.75281 -12.71512 -12.58787 -12.55819 -12.43340 -12.35669 -11.81161 -11.74537 -11.49261 -11.08360 -11.08077 -11.04623 -10.77772 -9.96369 -9.84491 -9.60175 -9.50222 -9.11889 -9.05752 -8.26693 -6.52773 -6.23445 -3.94607 -0.45695 0.29199 0.73754 2.42800 2.86411 2.98913 2.99377 3.21060 3.25736 3.29435 3.45978 3.67157 3.70079 3.99848 4.15716 4.18205 4.34445 4.39839 4.43290 4.76017 4.86970 4.89553 5.06039 5.11652 5.11722 5.27325 5.36538 5.40919 5.52400 5.65378 5.66667 5.79640 5.83185 6.08143 6.26454 6.38289 7.54571 7.57842 8.33076 8.48587 9.21704 10.83920 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.001980 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.088675 B =14141.159159 C =14607.553294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.512 6.512 13 N -0.734 5.734 14 C 0.131 3.869 15 C -0.626 4.626 16 S 2.507 3.493 17 O -0.928 6.928 18 O -0.928 6.928 19 C -0.660 4.660 20 C -0.024 4.024 21 C -0.141 4.141 22 C -0.066 4.066 23 C -0.141 4.141 24 C -0.024 4.024 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.402 0.598 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.068 -26.246 -0.002 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.385 6.385 13 N -0.390 5.390 14 C 0.005 3.995 15 C -0.755 4.755 16 S 2.685 3.315 17 O -0.925 6.925 18 O -0.925 6.925 19 C -0.747 4.747 20 C -0.043 4.043 21 C -0.160 4.160 22 C -0.084 4.084 23 C -0.160 4.160 24 C -0.043 4.043 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.040 -26.761 0.001 30.221 hybrid contribution 3.546 1.391 -0.006 3.809 sum 17.586 -25.370 -0.005 30.869 Atomic orbital electron populations 1.70018 1.05946 1.27509 1.46714 1.25002 0.95045 0.99059 0.94518 0.86156 0.79377 0.81536 0.78345 1.20264 1.20739 1.19718 1.22856 0.94896 0.91604 1.59104 0.90901 1.85446 1.04705 0.96319 1.96730 1.23533 1.06759 0.94988 1.05093 1.20413 0.86526 0.86284 0.75072 1.90729 1.15287 1.85488 1.46996 1.45910 1.10193 1.04379 1.78560 1.20883 0.92906 0.81421 1.04290 1.30648 1.10582 1.21363 1.12880 1.05208 0.74742 0.76554 0.74991 1.93600 1.71832 1.82604 1.44447 1.93601 1.71820 1.82583 1.44485 1.30604 1.23876 1.20573 0.99602 1.21042 0.93265 0.93180 0.96772 1.21352 0.96654 0.99227 0.98758 1.21550 0.98360 0.95817 0.92669 1.21352 0.96634 0.99252 0.98752 1.21040 0.93254 0.93194 0.96778 0.92137 0.89029 0.89035 0.76366 0.89765 0.89773 0.83788 0.83798 0.83865 0.84861 0.85138 0.84861 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 12 O -0.51 -11.49 15.86 5.55 0.09 -11.40 16 13 N -0.73 -9.09 5.56 -60.29 -0.33 -9.43 16 14 C 0.13 1.42 5.68 -4.04 -0.02 1.40 16 15 C -0.63 -3.91 6.09 37.16 0.23 -3.69 16 16 S 2.51 21.44 5.16 -107.50 -0.55 20.88 16 17 O -0.93 -10.76 17.13 -57.54 -0.99 -11.74 16 18 O -0.93 -10.76 17.12 -57.54 -0.99 -11.74 16 19 C -0.66 -4.89 5.66 -39.58 -0.22 -5.11 16 20 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 21 C -0.14 -0.77 10.05 -39.58 -0.40 -1.17 16 22 C -0.07 -0.33 10.05 -39.58 -0.40 -0.72 16 23 C -0.14 -0.77 10.05 -39.58 -0.40 -1.17 16 24 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 27 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 28 H 0.40 3.50 8.47 -40.82 -0.35 3.16 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.14 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.14 0.80 7.57 -52.48 -0.40 0.40 16 34 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.80 7.57 -52.49 -0.40 0.40 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -39.79 353.76 -10.06 -49.85 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.49 Total: -1.30 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -1.63 Total: -17.59 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.40 Total: -34.70 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.88 Total: -34.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 19.87 SS G_CDS: -2.77 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.79 -10.06 -49.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049035893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.758 kcal (2) G-P(sol) polarization free energy of solvation -39.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds