Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86805 * 119.99661 * 2 1 4 4 H 1.48497 * 109.47032 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.47210 * 30.00217 * 3 2 1 6 6 H 1.48500 * 109.46681 * 150.00062 * 3 2 1 7 7 C 1.38794 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99883 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00156 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99861 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99846 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47141 * 180.02562 * 14 13 11 16 16 S 1.81398 * 109.47178 * 180.02562 * 15 14 13 17 17 O 1.42095 * 110.54225 * 68.37635 * 16 15 14 18 18 O 1.42100 * 110.54081 * 291.62780 * 16 15 14 19 19 C 1.76199 * 104.44793 * 180.02562 * 16 15 14 20 20 C 1.38237 * 119.99920 * 90.00439 * 19 16 15 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00031 * 269.97621 * 19 16 15 25 25 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47265 * 60.00682 * 10 9 7 27 27 H 1.09002 * 109.47368 * 300.00118 * 10 9 7 28 28 H 0.97002 * 119.99995 * 0.02562 * 13 11 10 29 29 H 1.09003 * 109.46583 * 60.00602 * 14 13 11 30 30 H 1.09002 * 109.47191 * 300.00564 * 14 13 11 31 31 H 1.09004 * 109.46514 * 60.00207 * 15 14 13 32 32 H 1.08994 * 109.47457 * 300.00479 * 15 14 13 33 33 H 1.08005 * 120.00088 * 359.96860 * 20 19 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 37 37 H 1.07999 * 119.99990 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0018 14 6 2.3307 -7.7150 -0.0019 15 6 3.5028 -8.6985 -0.0020 16 16 2.8667 -10.3973 -0.0028 17 8 2.2330 -10.6918 -1.2400 18 8 2.2323 -10.6928 1.2339 19 6 4.3105 -11.4073 -0.0021 20 6 4.8761 -11.8038 1.1953 21 6 6.0091 -12.5958 1.1958 22 6 6.5759 -12.9921 -0.0010 23 6 6.0132 -12.5915 -1.1984 24 6 4.8774 -11.8036 -1.1990 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7313 0.8895 27 1 3.1247 -3.7312 -0.8905 28 1 3.8012 -6.1833 -0.0015 29 1 1.7218 -7.8749 -0.8917 30 1 1.7224 -7.8753 0.8883 31 1 4.1114 -8.5384 0.8881 32 1 4.1114 -8.5383 -0.8919 33 1 4.4332 -11.4942 2.1305 34 1 6.4511 -12.9052 2.1313 35 1 7.4609 -13.6111 -0.0006 36 1 6.4586 -12.8974 -2.1335 37 1 4.4355 -11.4938 -2.1345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049035893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = -109.558629 kcal Electronic energy + Delta-G solvation = -21864.560758 eV Core-core repulsion = 18245.361617 eV Total energy + Delta-G solvation = -3619.199140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.059 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68116 -40.03011 -38.27020 -37.10832 -36.54581 -34.57553 -32.70148 -32.29706 -31.97975 -30.18003 -27.66391 -24.94331 -23.86379 -23.69610 -22.00774 -20.14036 -19.81450 -19.03899 -18.04613 -17.48409 -17.37490 -16.96117 -16.87123 -16.76800 -16.70011 -15.85669 -15.78962 -15.47174 -15.35854 -14.80084 -14.46789 -14.45430 -14.01664 -13.71086 -13.49760 -13.26374 -13.22244 -13.15924 -13.15573 -12.91511 -12.83958 -12.61876 -12.20141 -12.19406 -11.74000 -11.63467 -11.13523 -11.00612 -10.37779 -10.27257 -10.26503 -10.02307 -8.66483 -8.33776 -6.12153 -1.10789 -0.17332 0.32067 1.26831 1.43564 1.47529 1.55087 1.57647 1.81522 2.19910 2.28211 2.48850 2.88622 3.00482 3.07164 3.27037 3.33898 3.68847 3.88799 3.97133 3.98119 4.13341 4.23251 4.30010 4.39766 4.41209 4.51852 4.53062 4.68293 4.72522 4.98420 5.10481 5.24498 5.29630 5.41285 5.42916 5.88267 6.20720 6.43577 7.07506 7.17693 8.75360 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.001980 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.088675 B =14141.159159 C =14607.553294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.564 6.564 13 N -0.704 5.704 14 C 0.116 3.884 15 C -0.604 4.604 16 S 2.511 3.489 17 O -0.968 6.968 18 O -0.968 6.968 19 C -0.662 4.662 20 C -0.041 4.041 21 C -0.146 4.146 22 C -0.066 4.066 23 C -0.146 4.146 24 C -0.041 4.041 25 H 0.271 0.729 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.424 0.576 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.209 -26.733 0.000 34.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.442 6.442 13 N -0.361 5.361 14 C -0.009 4.009 15 C -0.734 4.734 16 S 2.695 3.305 17 O -0.965 6.965 18 O -0.965 6.965 19 C -0.752 4.752 20 C -0.060 4.060 21 C -0.165 4.165 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.060 4.060 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.263 0.737 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.214 -27.294 0.002 32.813 hybrid contribution 2.379 1.368 -0.007 2.744 sum 20.593 -25.926 -0.005 33.109 Atomic orbital electron populations 1.70191 1.08016 1.28593 1.48031 1.26158 0.95979 1.03428 0.93808 0.84932 0.78200 0.75939 0.78762 1.19336 1.20491 1.18040 1.23201 0.95397 0.91833 1.58771 0.89658 1.85666 1.10701 0.99444 1.97079 1.23370 1.03585 0.93698 1.07313 1.20209 0.86227 0.86870 0.74993 1.90720 1.17577 1.86087 1.49819 1.45556 1.10726 1.03760 1.76021 1.21042 0.94898 0.81254 1.03713 1.30475 1.09241 1.17224 1.16436 1.04645 0.75019 0.77448 0.73360 1.93548 1.73603 1.83727 1.45607 1.93549 1.73591 1.83706 1.45644 1.30227 1.23257 1.21292 1.00399 1.21270 0.94046 0.93955 0.96756 1.21693 0.96100 0.98534 1.00145 1.21955 0.98931 0.95319 0.92163 1.21694 0.96080 0.98554 1.00137 1.21269 0.94036 0.93966 0.96763 0.92039 0.86662 0.86647 0.73699 0.90634 0.90639 0.80359 0.80368 0.83383 0.82683 0.82364 0.82678 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.62 5.49 84.86 0.47 1.08 16 3 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.54 -30.59 9.50 67.95 0.65 -29.94 16 8 H 0.09 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.53 18.84 7.85 87.66 0.69 19.53 16 12 O -0.56 -25.97 15.86 -3.04 -0.05 -26.02 16 13 N -0.70 -15.79 5.56 -463.03 -2.57 -18.37 16 14 C 0.12 2.39 5.68 86.38 0.49 2.88 16 15 C -0.60 -6.00 6.09 71.98 0.44 -5.57 16 16 S 2.51 42.27 5.16 -56.49 -0.29 41.98 16 17 O -0.97 -23.05 17.13 -127.65 -2.19 -25.23 16 18 O -0.97 -23.05 17.12 -127.65 -2.19 -25.23 16 19 C -0.66 -9.06 5.66 22.27 0.13 -8.93 16 20 C -0.04 -0.50 9.47 22.27 0.21 -0.29 16 21 C -0.15 -1.24 10.05 22.27 0.22 -1.01 16 22 C -0.07 -0.45 10.05 22.27 0.22 -0.23 16 23 C -0.15 -1.23 10.05 22.27 0.22 -1.01 16 24 C -0.04 -0.50 9.47 22.27 0.21 -0.29 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 26 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.42 5.67 8.47 -92.71 -0.79 4.88 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.15 1.51 7.57 -2.91 -0.02 1.49 16 34 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 36 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 37 H 0.15 1.51 7.57 -2.91 -0.02 1.49 16 Total: -1.00 -90.69 353.76 -1.44 -92.13 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.31 Total: 9.15 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.39 Total: -28.17 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.29 Total: -73.99 kcal Atomic # 8 Polarization: -72.07 SS G_CDS: -4.42 Total: -76.49 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 33.70 SS G_CDS: -1.45 Total: 32.25 kcal Total: -90.69 -1.44 -92.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049035893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.429 kcal (2) G-P(sol) polarization free energy of solvation -90.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds