Wall clock time and date at job start Tue Mar 31 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 115.56531 * 2 1 4 4 O 1.21282 * 120.00015 * 145.68980 * 3 2 1 5 5 N 1.34777 * 119.99511 * 325.68422 * 3 2 1 6 6 C 1.39929 * 119.99468 * 174.77464 * 5 3 2 7 7 C 1.38967 * 120.03356 * 146.41253 * 6 5 3 8 8 C 1.38156 * 120.06577 * 179.97438 * 7 6 5 9 9 C 1.38166 * 120.13718 * 359.97438 * 8 7 6 10 10 C 1.38903 * 120.07674 * 0.04430 * 9 8 7 11 11 O 1.35742 * 120.04015 * 179.97438 * 10 9 8 12 12 C 1.34834 * 117.00052 * 5.91471 * 11 10 9 13 13 H 1.08003 * 119.99429 * 5.40914 * 12 11 10 14 14 C 1.38651 * 120.00808 * 185.41314 * 12 11 10 15 15 N 1.31558 * 119.99453 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00465 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47157 * 89.99565 * 16 14 12 18 18 H 1.48493 * 109.46893 * 209.99823 * 16 14 12 19 19 H 1.48503 * 109.46956 * 329.99662 * 16 14 12 20 20 C 1.38714 * 120.03638 * 326.13526 * 6 5 3 21 21 C 1.53007 * 117.49796 * 145.68788 * 2 1 3 22 22 C 1.53002 * 60.00230 * 107.49133 * 21 2 1 23 23 Cl 1.80301 * 117.50214 * 107.48765 * 22 21 2 24 24 Cl 1.80298 * 117.49779 * 252.51570 * 22 21 2 25 25 H 1.09000 * 109.47368 * 274.31334 * 1 2 3 26 26 H 1.09004 * 109.46904 * 34.31598 * 1 2 3 27 27 H 1.09000 * 109.47111 * 154.30910 * 1 2 3 28 28 H 0.96993 * 120.00419 * 354.78053 * 5 3 2 29 29 H 1.08001 * 119.96381 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.92588 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.96338 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00155 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.06616 * 359.97438 * 20 6 5 34 34 H 1.08997 * 117.49817 * 0.02562 * 21 2 1 35 35 H 1.08999 * 117.49825 * 214.97493 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 8 3.2246 1.5322 0.5920 5 7 1.6014 2.3834 -0.6580 6 6 2.1453 3.6695 -0.5683 7 6 2.0761 4.5314 -1.6561 8 6 2.6124 5.8016 -1.5681 9 6 3.2187 6.2190 -0.3988 10 6 3.2915 5.3621 0.6919 11 8 3.8877 5.7728 1.8402 12 6 4.2792 7.0617 1.8995 13 1 4.0359 7.7376 1.0930 14 6 4.9940 7.5196 2.9958 15 7 5.2899 6.6964 3.9784 16 14 5.5356 9.3054 3.0783 17 1 4.4805 10.1125 3.7422 18 1 6.7972 9.4046 3.8552 19 1 5.7596 9.8187 1.7029 20 6 2.7492 4.0874 0.6085 21 6 2.2364 -1.1210 0.7651 22 6 2.2365 -1.1211 -0.7650 23 17 3.7832 -0.7144 -1.5975 24 17 1.2022 -2.3409 -1.5974 25 1 -0.3634 0.0773 1.0247 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3633 -0.9261 -0.4455 28 1 0.8077 2.2288 -1.1937 29 1 1.6024 4.2081 -2.5713 30 1 2.5570 6.4698 -2.4148 31 1 3.6367 7.2127 -0.3329 32 1 5.7904 7.0165 4.7453 33 1 2.7999 3.4210 1.4569 34 1 1.6112 -1.8587 1.2680 35 1 3.1715 -0.8752 1.2683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049297400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:35 Heat of formation + Delta-G solvation = -13.032382 kcal Electronic energy + Delta-G solvation = -22789.376594 eV Core-core repulsion = 19034.442639 eV Total energy + Delta-G solvation = -3754.933956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.037 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69916 -38.97857 -37.80446 -36.55969 -36.31925 -35.69581 -34.23357 -32.25669 -29.81136 -29.17424 -28.22862 -25.35645 -24.18946 -22.69881 -21.96639 -21.23327 -19.53573 -18.34586 -17.69121 -17.06152 -16.14939 -15.75654 -15.29941 -15.09469 -14.72486 -14.24037 -14.19570 -13.76451 -13.57482 -13.52127 -13.21262 -12.86554 -12.64909 -12.58660 -12.45288 -11.78841 -11.74304 -11.53747 -11.49666 -11.22055 -11.10686 -10.98651 -10.81817 -10.69994 -10.46476 -10.22785 -9.90320 -9.75232 -9.27843 -8.81987 -7.73225 -7.20683 -6.42786 -4.02114 0.75620 1.78500 1.82740 2.30811 2.42066 3.00413 3.11691 3.14462 3.16812 3.20045 3.75054 3.87239 3.97746 4.41166 4.49844 4.61072 5.11982 5.12259 5.22093 5.24380 5.33562 5.43090 5.60495 5.67701 5.80223 6.07428 6.17792 6.33641 6.62430 6.81793 6.99546 7.05691 7.32768 7.44718 7.57947 7.74938 8.01616 8.20029 9.02079 9.72774 10.75036 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002839 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.673807 B = 9860.226045 C =10269.398211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.542 3.458 4 O -0.488 6.488 5 N -0.659 5.659 6 C 0.177 3.823 7 C -0.234 4.234 8 C -0.057 4.057 9 C -0.243 4.243 10 C 0.168 3.832 11 O -0.173 6.173 12 C -0.392 4.392 13 H 0.093 0.907 14 C 0.039 3.961 15 N -0.860 5.860 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.267 1.267 20 C -0.187 4.187 21 C -0.108 4.108 22 C 0.017 3.983 23 Cl -0.072 7.072 24 Cl -0.087 7.087 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.406 0.594 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.270 0.730 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -15.027 -10.115 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C 0.327 3.673 4 O -0.360 6.360 5 N -0.304 5.304 6 C 0.084 3.916 7 C -0.255 4.255 8 C -0.076 4.076 9 C -0.263 4.263 10 C 0.113 3.887 11 O -0.076 6.076 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.208 4.208 21 C -0.146 4.146 22 C -0.035 4.035 23 Cl -0.044 7.044 24 Cl -0.060 7.060 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.242 0.758 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.873 -15.113 -9.350 20.330 hybrid contribution -0.065 0.738 -0.578 0.940 sum -9.938 -14.375 -9.928 20.099 Atomic orbital electron populations 1.21603 0.88491 1.04217 1.04217 1.22491 0.97701 0.90183 1.03001 1.19096 0.84519 0.84026 0.79672 1.90838 1.20945 1.82816 1.41412 1.43238 1.30774 1.06609 1.49819 1.17125 0.97887 0.82922 0.93619 1.20259 1.12059 0.96022 0.97171 1.20509 0.95782 0.94671 0.96649 1.21191 1.08941 1.02019 0.94173 1.19098 0.90945 0.91961 0.86665 1.84004 1.64886 1.29051 1.29654 1.21337 1.35879 0.82671 1.06925 0.89009 1.25304 0.96144 1.00223 0.94861 1.70054 1.36492 1.35206 1.07688 0.85710 0.78407 0.80453 0.78834 1.19880 1.20264 1.19176 1.19984 1.07251 0.95778 0.97816 1.24076 1.04361 0.97315 0.88839 1.26820 0.87849 0.95932 0.92896 1.98798 1.31631 1.93149 1.80845 1.98737 1.68198 1.57807 1.81230 0.89837 0.90906 0.89975 0.75784 0.87326 0.86972 0.85398 0.92002 0.85383 0.85155 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.68 37.15 0.36 -0.57 16 2 C -0.13 -1.34 2.61 -155.65 -0.41 -1.75 16 3 C 0.54 8.05 6.21 -10.98 -0.07 7.98 16 4 O -0.49 -9.43 13.81 5.56 0.08 -9.35 16 5 N -0.66 -9.37 5.19 -9.88 -0.05 -9.42 16 6 C 0.18 3.25 6.27 -83.72 -0.52 2.73 16 7 C -0.23 -3.97 9.96 -39.34 -0.39 -4.36 16 8 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 9 C -0.24 -5.32 9.13 -39.36 -0.36 -5.68 16 10 C 0.17 4.19 6.64 -39.14 -0.26 3.93 16 11 O -0.17 -5.07 9.76 0.06 0.00 -5.07 16 12 C -0.39 -11.08 9.44 30.88 0.29 -10.79 16 13 H 0.09 2.38 5.29 -52.48 -0.28 2.10 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 16 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.19 -4.22 8.60 -39.21 -0.34 -4.56 16 21 C -0.11 -1.01 9.45 -26.73 -0.25 -1.26 16 22 C 0.02 0.18 3.60 -26.72 -0.10 0.08 16 23 Cl -0.07 -0.92 28.18 -51.86 -1.46 -2.38 16 24 Cl -0.09 -0.75 27.29 -51.86 -1.41 -2.17 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.46 6.46 -51.93 -0.34 0.13 16 27 H 0.08 0.51 6.12 -51.93 -0.32 0.19 16 28 H 0.41 4.19 7.25 -40.82 -0.30 3.89 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.13 3.06 6.45 -52.49 -0.34 2.72 16 34 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.14 1.47 7.67 -51.93 -0.40 1.08 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -33.33 331.54 -7.75 -41.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.09 Total: 6.23 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.54 Total: -14.68 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.71 Total: -34.28 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -2.88 Total: -4.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.33 -7.75 -41.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049297400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.048 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds