Wall clock time and date at job start Tue Mar 31 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 115.56531 * 2 1 4 4 O 1.21282 * 120.00015 * 145.68980 * 3 2 1 5 5 N 1.34777 * 119.99511 * 325.68422 * 3 2 1 6 6 C 1.39929 * 119.99468 * 174.77464 * 5 3 2 7 7 C 1.38967 * 120.03356 * 146.41253 * 6 5 3 8 8 C 1.38156 * 120.06577 * 179.97438 * 7 6 5 9 9 C 1.38166 * 120.13718 * 359.97438 * 8 7 6 10 10 C 1.38903 * 120.07674 * 0.04430 * 9 8 7 11 11 O 1.35742 * 120.04015 * 179.97438 * 10 9 8 12 12 C 1.34834 * 117.00052 * 5.91471 * 11 10 9 13 13 H 1.08003 * 119.99429 * 5.40914 * 12 11 10 14 14 C 1.38651 * 120.00808 * 185.41314 * 12 11 10 15 15 N 1.31558 * 119.99453 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00465 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47157 * 89.99565 * 16 14 12 18 18 H 1.48493 * 109.46893 * 209.99823 * 16 14 12 19 19 H 1.48503 * 109.46956 * 329.99662 * 16 14 12 20 20 C 1.38714 * 120.03638 * 326.13526 * 6 5 3 21 21 C 1.53007 * 117.49796 * 145.68788 * 2 1 3 22 22 C 1.53002 * 60.00230 * 107.49133 * 21 2 1 23 23 Cl 1.80301 * 117.50214 * 107.48765 * 22 21 2 24 24 Cl 1.80298 * 117.49779 * 252.51570 * 22 21 2 25 25 H 1.09000 * 109.47368 * 274.31334 * 1 2 3 26 26 H 1.09004 * 109.46904 * 34.31598 * 1 2 3 27 27 H 1.09000 * 109.47111 * 154.30910 * 1 2 3 28 28 H 0.96993 * 120.00419 * 354.78053 * 5 3 2 29 29 H 1.08001 * 119.96381 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.92588 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.96338 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00155 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.06616 * 359.97438 * 20 6 5 34 34 H 1.08997 * 117.49817 * 0.02562 * 21 2 1 35 35 H 1.08999 * 117.49825 * 214.97493 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 8 3.2246 1.5322 0.5920 5 7 1.6014 2.3834 -0.6580 6 6 2.1453 3.6695 -0.5683 7 6 2.0761 4.5314 -1.6561 8 6 2.6124 5.8016 -1.5681 9 6 3.2187 6.2190 -0.3988 10 6 3.2915 5.3621 0.6919 11 8 3.8877 5.7728 1.8402 12 6 4.2792 7.0617 1.8995 13 1 4.0359 7.7376 1.0930 14 6 4.9940 7.5196 2.9958 15 7 5.2899 6.6964 3.9784 16 14 5.5356 9.3054 3.0783 17 1 4.4805 10.1125 3.7422 18 1 6.7972 9.4046 3.8552 19 1 5.7596 9.8187 1.7029 20 6 2.7492 4.0874 0.6085 21 6 2.2364 -1.1210 0.7651 22 6 2.2365 -1.1211 -0.7650 23 17 3.7832 -0.7144 -1.5975 24 17 1.2022 -2.3409 -1.5974 25 1 -0.3634 0.0773 1.0247 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3633 -0.9261 -0.4455 28 1 0.8077 2.2288 -1.1937 29 1 1.6024 4.2081 -2.5713 30 1 2.5570 6.4698 -2.4148 31 1 3.6367 7.2127 -0.3329 32 1 5.7904 7.0165 4.7453 33 1 2.7999 3.4210 1.4569 34 1 1.6112 -1.8587 1.2680 35 1 3.1715 -0.8752 1.2683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049297400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:35 Heat of formation + Delta-G solvation = -34.871836 kcal Electronic energy + Delta-G solvation = -22790.323624 eV Core-core repulsion = 19034.442639 eV Total energy + Delta-G solvation = -3755.880985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92981 -40.59087 -39.02011 -38.02583 -37.19805 -36.60887 -35.67780 -34.26639 -31.31654 -30.48632 -29.34242 -27.35471 -25.42350 -23.54736 -23.45273 -22.83080 -20.74175 -20.03356 -19.12464 -18.49109 -17.35811 -16.95261 -16.77748 -16.68220 -16.10993 -15.76433 -15.66994 -15.48749 -14.70231 -14.60935 -14.32027 -14.22114 -13.96489 -13.59112 -13.44460 -13.32416 -13.18536 -12.92458 -12.66839 -12.55507 -12.38516 -12.30908 -12.13177 -11.92220 -11.54166 -11.46966 -11.34353 -11.06562 -10.82763 -10.75276 -9.36190 -8.89534 -8.46740 -6.16220 -0.09225 0.36213 0.68963 0.92342 1.23066 1.34834 1.45490 1.53400 1.86718 2.16489 2.18814 2.81232 2.90701 3.07098 3.17076 3.30364 3.64622 3.79459 4.12049 4.35650 4.39924 4.48703 4.59297 4.65269 4.69020 4.71529 4.74780 5.01857 5.10977 5.13619 5.36430 5.40822 5.62280 5.73043 6.02348 6.16674 6.32823 6.97019 7.01811 7.78992 8.76975 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002839 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.673807 B = 9860.226045 C =10269.398211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.126 4.126 3 C 0.538 3.462 4 O -0.539 6.539 5 N -0.646 5.646 6 C 0.186 3.814 7 C -0.205 4.205 8 C -0.048 4.048 9 C -0.254 4.254 10 C 0.129 3.871 11 O -0.234 6.234 12 C -0.413 4.413 13 H 0.106 0.894 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.022 2.978 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.250 1.250 20 C -0.210 4.210 21 C -0.104 4.104 22 C 0.019 3.981 23 Cl -0.101 7.101 24 Cl -0.064 7.064 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.429 0.571 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.272 0.728 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 -15.349 -13.320 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C 0.325 3.675 4 O -0.414 6.414 5 N -0.294 5.294 6 C 0.092 3.908 7 C -0.226 4.226 8 C -0.066 4.066 9 C -0.274 4.274 10 C 0.077 3.923 11 O -0.140 6.140 12 C -0.489 4.489 13 H 0.123 0.877 14 C -0.223 4.223 15 N -0.561 5.561 16 Si 0.841 3.159 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.173 1.173 20 C -0.231 4.231 21 C -0.142 4.142 22 C -0.033 4.033 23 Cl -0.074 7.074 24 Cl -0.036 7.036 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.270 0.730 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.184 0.816 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.492 -15.480 -12.635 23.565 hybrid contribution 0.514 0.573 0.156 0.786 sum -11.978 -14.907 -12.479 22.834 Atomic orbital electron populations 1.21712 0.85529 1.05615 1.05379 1.22467 0.99422 0.87453 1.03730 1.19876 0.83863 0.85569 0.78169 1.90836 1.23439 1.83913 1.43254 1.43179 1.31307 1.04971 1.49909 1.17250 0.96322 0.84780 0.92439 1.20879 1.09057 0.94753 0.97862 1.21028 0.93569 0.95771 0.96236 1.21334 1.09764 1.01470 0.94836 1.19638 0.92015 0.93584 0.87017 1.83964 1.67803 1.29846 1.32428 1.21883 1.36173 0.83121 1.07735 0.87691 1.26684 0.95904 1.05667 0.94056 1.70219 1.38862 1.38072 1.08977 0.84545 0.78045 0.73669 0.79660 1.18590 1.19801 1.17328 1.20013 1.09106 0.94961 0.99046 1.24238 1.04053 0.97433 0.88440 1.26838 0.86897 0.96291 0.93266 1.98796 1.33812 1.93438 1.81386 1.98744 1.67240 1.56736 1.80929 0.88836 0.89701 0.88364 0.73034 0.82067 0.82316 0.85918 0.91884 0.88214 0.81608 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.68 71.98 0.70 -0.68 16 2 C -0.13 -2.38 2.61 -52.92 -0.14 -2.52 16 3 C 0.54 15.67 6.21 87.66 0.54 16.21 16 4 O -0.54 -21.72 13.81 -3.04 -0.04 -21.76 16 5 N -0.65 -17.00 5.19 -303.54 -1.57 -18.58 16 6 C 0.19 6.56 6.27 38.14 0.24 6.80 16 7 C -0.21 -6.06 9.96 22.42 0.22 -5.84 16 8 C -0.05 -1.55 10.03 22.23 0.22 -1.33 16 9 C -0.25 -11.13 9.13 22.41 0.20 -10.92 16 10 C 0.13 6.75 6.64 22.56 0.15 6.90 16 11 O -0.23 -14.83 9.76 -22.70 -0.22 -15.05 16 12 C -0.41 -24.73 9.44 67.92 0.64 -24.09 16 13 H 0.11 5.68 5.29 -2.91 -0.02 5.66 16 14 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 15 N -0.92 -58.70 13.67 21.61 0.30 -58.40 16 16 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 20 C -0.21 -9.89 8.60 22.51 0.19 -9.69 16 21 C -0.10 -1.80 9.45 30.60 0.29 -1.51 16 22 C 0.02 0.36 3.60 30.60 0.11 0.47 16 23 Cl -0.10 -2.56 28.18 -2.72 -0.08 -2.64 16 24 Cl -0.06 -0.92 27.29 -2.72 -0.07 -0.99 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 0.73 6.46 -2.38 -0.02 0.71 16 27 H 0.10 0.80 6.12 -2.39 -0.01 0.79 16 28 H 0.43 7.15 7.25 -92.71 -0.67 6.48 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.12 5.40 5.71 -2.91 -0.02 5.38 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.10 5.19 6.45 -2.91 -0.02 5.17 16 34 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.12 2.58 7.67 -2.39 -0.02 2.56 16 Total: -1.00 -81.93 331.54 4.67 -77.26 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.49 Total: 21.74 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 3.84 Total: -27.26 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.28 Total: -76.98 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.26 Total: -36.81 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.15 Total: -3.63 kcal Total: -81.93 4.67 -77.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049297400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.383 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds