Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99617 * 2 1 4 4 C 1.38741 * 120.05205 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94507 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05427 * 0.02562 * 5 4 3 7 7 S 1.76202 * 119.94487 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.40110 * 336.46117 * 7 6 5 9 9 O 1.42100 * 106.40412 * 203.54029 * 7 6 5 10 10 N 1.65601 * 107.21818 * 89.99815 * 7 6 5 11 11 C 1.46499 * 120.00191 * 65.00300 * 10 7 6 12 12 H 1.09009 * 109.46700 * 24.99700 * 11 10 7 13 13 C 1.52996 * 109.46879 * 265.00131 * 11 10 7 14 14 C 1.50700 * 109.47257 * 144.99805 * 11 10 7 15 15 O 1.21213 * 119.99758 * 359.97438 * 14 11 10 16 16 O 1.34307 * 119.99699 * 180.27693 * 14 11 10 17 17 C 1.34923 * 117.00000 * 179.72351 * 16 14 11 18 18 H 1.08007 * 119.99533 * 0.02562 * 17 16 14 19 19 C 1.38749 * 120.00389 * 179.97438 * 17 16 14 20 20 N 1.31439 * 120.00041 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47417 * 89.99398 * 21 19 17 23 23 H 1.48498 * 109.47202 * 209.99921 * 21 19 17 24 24 H 1.48508 * 109.47195 * 329.99599 * 21 19 17 25 25 C 1.38266 * 120.11386 * 0.24978 * 6 5 4 26 26 C 1.38145 * 120.05664 * 359.45139 * 25 6 5 27 27 H 1.09001 * 109.47223 * 300.00262 * 1 2 3 28 28 H 1.09003 * 109.47031 * 60.00235 * 1 2 3 29 29 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.02472 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.97259 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99627 * 244.99990 * 10 7 6 33 33 H 1.08996 * 109.47637 * 59.99806 * 13 11 10 34 34 H 1.09004 * 109.46762 * 179.97438 * 13 11 10 35 35 H 1.08995 * 109.47223 * 299.99284 * 13 11 10 36 36 H 0.97005 * 119.99848 * 180.02562 * 20 19 17 37 37 H 1.08004 * 119.97011 * 179.70572 * 25 6 5 38 38 H 1.07995 * 120.03301 * 180.25504 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0016 7 16 4.1018 5.2457 0.0030 8 8 5.3974 5.0354 0.5477 9 8 3.1703 6.1702 0.5477 10 7 4.3249 5.6835 -1.5784 11 6 3.1667 5.9430 -2.4371 12 1 2.3164 6.2365 -1.8213 13 6 2.8169 4.6750 -3.2185 14 6 3.4952 7.0531 -3.4019 15 8 4.5884 7.5761 -3.3745 16 8 2.5747 7.4671 -4.2879 17 6 2.9312 8.4684 -5.1190 18 1 3.9195 8.8990 -5.0529 19 6 2.0286 8.9443 -6.0592 20 7 2.3761 9.9195 -6.8691 21 14 0.3195 8.1992 -6.1740 22 1 -0.6045 8.9393 -5.2774 23 1 -0.1682 8.2923 -7.5735 24 1 0.3724 6.7733 -5.7621 25 6 1.9211 3.6047 0.0068 26 6 1.2914 2.3751 0.0001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0208 0.3799 0.0005 31 1 5.1346 2.5750 0.0011 32 1 5.2226 5.7682 -1.9362 33 1 2.5793 3.8721 -2.5208 34 1 1.9548 4.8680 -3.8571 35 1 3.6671 4.3816 -3.8343 36 1 1.7450 10.2524 -7.5262 37 1 1.3343 4.5114 0.0120 38 1 0.2129 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049774757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = -156.388079 kcal Electronic energy + Delta-G solvation = -26067.748041 eV Core-core repulsion = 22003.765352 eV Total energy + Delta-G solvation = -4063.982689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59128 -39.47779 -37.90475 -37.28680 -36.26433 -35.86626 -34.74588 -32.37095 -31.63183 -30.79988 -29.94669 -27.86620 -25.91089 -23.74224 -23.34293 -22.90101 -20.15837 -19.69067 -18.80449 -18.14874 -18.09741 -17.50551 -16.78293 -16.33958 -16.24382 -15.98595 -15.18632 -15.05486 -15.03516 -14.53273 -14.23437 -13.95544 -13.71968 -13.55705 -13.40757 -13.21019 -12.60793 -12.49145 -12.45348 -12.24333 -12.11572 -12.05268 -11.82845 -11.65148 -11.48480 -11.38590 -11.26738 -11.04851 -10.54761 -10.43881 -9.80121 -9.76433 -9.48889 -9.17709 -8.97188 -8.73553 -6.41953 -4.18327 0.27618 0.60669 0.90556 2.69162 2.83685 3.05312 3.18271 3.21842 3.28237 3.32647 3.73659 3.94230 4.17839 4.19601 4.33433 4.46087 4.63568 4.67147 4.85441 4.95268 4.98939 5.02343 5.04923 5.13665 5.23751 5.30321 5.50187 5.56896 5.62190 5.76283 5.80192 5.97145 6.21067 6.21758 6.37628 6.81110 7.02510 7.65279 7.98321 8.52769 8.95108 9.58302 10.66282 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.003728 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.499436 B = 7509.533752 C = 8923.515081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.313 6.313 3 C 0.180 3.820 4 C -0.173 4.173 5 C 0.023 3.977 6 C -0.713 4.713 7 S 2.702 3.298 8 O -0.957 6.957 9 O -0.955 6.955 10 N -1.097 6.097 11 C 0.166 3.834 12 H 0.117 0.883 13 C -0.168 4.168 14 C 0.408 3.592 15 O -0.529 6.529 16 O -0.245 6.245 17 C -0.383 4.383 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.872 5.872 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.259 1.259 25 C 0.022 3.978 26 C -0.229 4.229 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.427 0.573 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.280 0.720 37 H 0.146 0.854 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -21.013 13.223 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.133 3.867 4 C -0.193 4.193 5 C 0.003 3.997 6 C -0.800 4.800 7 S 2.791 3.209 8 O -0.947 6.947 9 O -0.945 6.945 10 N -0.859 5.859 11 C 0.057 3.943 12 H 0.135 0.865 13 C -0.227 4.227 14 C 0.251 3.749 15 O -0.423 6.423 16 O -0.153 6.153 17 C -0.458 4.458 18 H 0.128 0.872 19 C -0.137 4.137 20 N -0.511 5.511 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.183 1.183 25 C 0.003 3.997 26 C -0.248 4.248 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.676 -20.459 13.830 25.134 hybrid contribution -0.955 -0.627 -0.707 1.344 sum -5.631 -21.086 13.122 25.466 Atomic orbital electron populations 1.23187 0.77593 1.04482 1.01976 1.86111 1.22139 1.26817 1.87409 1.19349 0.92598 0.84279 0.90442 1.20546 0.91424 0.98968 1.08315 1.20740 1.00176 0.90095 0.88650 1.30882 1.05104 1.21660 1.22376 1.01610 0.73532 0.73707 0.72009 1.93588 1.38707 1.86533 1.75914 1.93596 1.64885 1.59899 1.76150 1.55310 1.15320 1.84708 1.30559 1.20032 0.88273 0.93971 0.92053 0.86540 1.22308 1.03767 0.95655 1.01009 1.22663 0.84303 0.85082 0.82855 1.90604 1.24213 1.56870 1.70639 1.83483 1.41866 1.48361 1.41604 1.20661 1.03120 1.10164 1.11870 0.87170 1.24544 0.99413 0.95375 0.94378 1.69604 1.36736 1.25136 1.19597 0.86235 0.82592 0.80685 0.77526 1.19730 1.20745 1.18319 1.20782 0.92303 0.98448 0.88174 1.21361 1.00645 0.92153 1.10676 0.92152 0.91983 0.87819 0.84203 0.83397 0.73510 0.91588 0.89689 0.91059 0.90940 0.83645 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.62 10.50 -19.41 -0.20 -2.82 16 3 C 0.18 1.67 6.69 -39.21 -0.26 1.40 16 4 C -0.17 -1.59 9.99 -39.43 -0.39 -1.98 16 5 C 0.02 0.22 9.51 -39.61 -0.38 -0.15 16 6 C -0.71 -7.89 5.06 -39.56 -0.20 -8.09 16 7 S 2.70 36.84 5.72 -107.50 -0.61 36.23 16 8 O -0.96 -14.73 17.28 -57.17 -0.99 -15.72 16 9 O -0.96 -15.51 16.61 -57.17 -0.95 -16.46 16 10 N -1.10 -15.90 5.26 -5.88 -0.03 -15.93 16 11 C 0.17 2.65 3.42 -69.08 -0.24 2.41 16 12 H 0.12 1.66 7.50 -51.92 -0.39 1.27 16 13 C -0.17 -2.20 9.45 37.16 0.35 -1.84 16 14 C 0.41 9.13 7.27 36.01 0.26 9.39 16 15 O -0.53 -13.43 15.23 -19.05 -0.29 -13.72 16 16 O -0.25 -6.17 8.49 -20.70 -0.18 -6.34 16 17 C -0.38 -11.07 10.10 30.92 0.31 -10.76 16 18 H 0.11 3.53 7.09 -52.48 -0.37 3.16 16 19 C 0.07 1.87 5.49 -17.53 -0.10 1.78 16 20 N -0.87 -25.36 13.96 55.48 0.77 -24.59 16 21 Si 0.90 20.60 28.62 -169.99 -4.86 15.73 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 C 0.02 0.22 8.60 -39.61 -0.34 -0.12 16 26 C -0.23 -2.00 9.04 -39.43 -0.36 -2.36 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.15 1.24 7.61 -52.48 -0.40 0.84 16 32 H 0.43 6.10 8.21 -34.47 -0.28 5.82 16 33 H 0.07 0.68 6.18 -51.93 -0.32 0.36 16 34 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.15 1.31 7.61 -52.48 -0.40 0.91 16 38 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -36.36 344.00 -6.62 -42.98 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.12 Total: 4.68 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.35 Total: -9.22 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.74 Total: -40.52 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -2.61 Total: -55.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.86 Total: 15.73 kcal Atomic # 16 Polarization: 36.84 SS G_CDS: -0.61 Total: 36.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.36 -6.62 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049774757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.405 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds