Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99617 * 2 1 4 4 C 1.38741 * 120.05205 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94507 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05427 * 0.02562 * 5 4 3 7 7 S 1.76202 * 119.94487 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.40110 * 336.46117 * 7 6 5 9 9 O 1.42100 * 106.40412 * 203.54029 * 7 6 5 10 10 N 1.65601 * 107.21818 * 89.99815 * 7 6 5 11 11 C 1.46499 * 120.00191 * 65.00300 * 10 7 6 12 12 H 1.09009 * 109.46700 * 24.99700 * 11 10 7 13 13 C 1.52996 * 109.46879 * 265.00131 * 11 10 7 14 14 C 1.50700 * 109.47257 * 144.99805 * 11 10 7 15 15 O 1.21213 * 119.99758 * 359.97438 * 14 11 10 16 16 O 1.34307 * 119.99699 * 180.27693 * 14 11 10 17 17 C 1.34923 * 117.00000 * 179.72351 * 16 14 11 18 18 H 1.08007 * 119.99533 * 0.02562 * 17 16 14 19 19 C 1.38749 * 120.00389 * 179.97438 * 17 16 14 20 20 N 1.31439 * 120.00041 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47417 * 89.99398 * 21 19 17 23 23 H 1.48498 * 109.47202 * 209.99921 * 21 19 17 24 24 H 1.48508 * 109.47195 * 329.99599 * 21 19 17 25 25 C 1.38266 * 120.11386 * 0.24978 * 6 5 4 26 26 C 1.38145 * 120.05664 * 359.45139 * 25 6 5 27 27 H 1.09001 * 109.47223 * 300.00262 * 1 2 3 28 28 H 1.09003 * 109.47031 * 60.00235 * 1 2 3 29 29 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.02472 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.97259 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99627 * 244.99990 * 10 7 6 33 33 H 1.08996 * 109.47637 * 59.99806 * 13 11 10 34 34 H 1.09004 * 109.46762 * 179.97438 * 13 11 10 35 35 H 1.08995 * 109.47223 * 299.99284 * 13 11 10 36 36 H 0.97005 * 119.99848 * 180.02562 * 20 19 17 37 37 H 1.08004 * 119.97011 * 179.70572 * 25 6 5 38 38 H 1.07995 * 120.03301 * 180.25504 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0016 7 16 4.1018 5.2457 0.0030 8 8 5.3974 5.0354 0.5477 9 8 3.1703 6.1702 0.5477 10 7 4.3249 5.6835 -1.5784 11 6 3.1667 5.9430 -2.4371 12 1 2.3164 6.2365 -1.8213 13 6 2.8169 4.6750 -3.2185 14 6 3.4952 7.0531 -3.4019 15 8 4.5884 7.5761 -3.3745 16 8 2.5747 7.4671 -4.2879 17 6 2.9312 8.4684 -5.1190 18 1 3.9195 8.8990 -5.0529 19 6 2.0286 8.9443 -6.0592 20 7 2.3761 9.9195 -6.8691 21 14 0.3195 8.1992 -6.1740 22 1 -0.6045 8.9393 -5.2774 23 1 -0.1682 8.2923 -7.5735 24 1 0.3724 6.7733 -5.7621 25 6 1.9211 3.6047 0.0068 26 6 1.2914 2.3751 0.0001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0208 0.3799 0.0005 31 1 5.1346 2.5750 0.0011 32 1 5.2226 5.7682 -1.9362 33 1 2.5793 3.8721 -2.5208 34 1 1.9548 4.8680 -3.8571 35 1 3.6671 4.3816 -3.8343 36 1 1.7450 10.2524 -7.5262 37 1 1.3343 4.5114 0.0120 38 1 0.2129 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049774757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -184.595467 kcal Electronic energy + Delta-G solvation = -26068.971205 eV Core-core repulsion = 22003.765352 eV Total energy + Delta-G solvation = -4065.205853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34724 -41.20525 -38.56998 -38.46828 -37.90667 -37.04350 -36.39942 -34.50181 -32.30777 -31.50244 -31.14678 -28.30002 -27.85533 -25.25482 -24.06913 -23.58258 -21.84844 -20.76730 -20.19248 -19.53353 -19.30857 -18.58504 -17.92451 -17.61222 -17.29025 -16.82000 -16.75794 -16.47732 -16.07856 -15.78130 -15.32162 -14.89449 -14.65543 -14.62319 -14.51678 -14.32695 -14.17056 -13.97664 -13.45597 -13.32063 -13.26285 -13.17368 -13.03239 -12.90208 -12.70561 -12.38817 -12.26895 -12.20954 -12.04931 -11.92365 -11.82994 -11.22962 -10.82640 -10.75340 -10.17479 -9.66898 -8.53665 -6.41676 -0.76864 -0.18834 0.22554 1.26458 1.37197 1.52669 1.58727 1.76897 2.19391 2.27544 2.33045 2.42918 2.71880 2.92361 3.22142 3.63736 3.74523 3.81689 3.93840 4.03980 4.14269 4.26322 4.38899 4.40044 4.43361 4.49066 4.73627 4.76004 4.84146 4.92645 4.96656 5.04910 5.14358 5.21304 5.47084 5.54708 5.80245 5.90780 6.23897 6.49735 6.81499 7.53016 8.59047 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.003728 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.499436 B = 7509.533752 C = 8923.515081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.180 3.820 4 C -0.178 4.178 5 C 0.017 3.983 6 C -0.715 4.715 7 S 2.714 3.286 8 O -0.980 6.980 9 O -0.985 6.985 10 N -1.102 6.102 11 C 0.174 3.826 12 H 0.140 0.860 13 C -0.163 4.163 14 C 0.406 3.594 15 O -0.566 6.566 16 O -0.246 6.246 17 C -0.410 4.410 18 H 0.056 0.944 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.237 1.237 25 C 0.013 3.987 26 C -0.225 4.225 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.427 0.573 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.290 0.710 37 H 0.155 0.845 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 -24.218 13.922 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.132 3.868 4 C -0.198 4.198 5 C -0.003 4.003 6 C -0.806 4.806 7 S 2.808 3.192 8 O -0.970 6.970 9 O -0.975 6.975 10 N -0.862 5.862 11 C 0.065 3.935 12 H 0.158 0.842 13 C -0.222 4.222 14 C 0.251 3.749 15 O -0.461 6.461 16 O -0.154 6.154 17 C -0.486 4.486 18 H 0.074 0.926 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.800 3.200 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.160 1.160 25 C -0.007 4.007 26 C -0.244 4.244 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.173 0.827 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.585 -23.630 14.539 28.762 hybrid contribution 0.049 0.262 -0.821 0.863 sum -7.537 -23.368 13.718 28.125 Atomic orbital electron populations 1.23504 0.75693 1.06138 1.02956 1.86113 1.24134 1.26374 1.86955 1.19534 0.92807 0.84898 0.89530 1.20765 0.91959 0.99177 1.07873 1.20897 1.00733 0.90052 0.88569 1.30307 1.05608 1.19655 1.25051 1.00940 0.72838 0.74228 0.71179 1.93553 1.40192 1.87108 1.76164 1.93551 1.65340 1.62001 1.76639 1.55363 1.14986 1.85242 1.30588 1.20240 0.89293 0.92801 0.91186 0.84227 1.22330 1.03826 0.94605 1.01418 1.24198 0.83300 0.85195 0.82176 1.90589 1.25817 1.58241 1.71419 1.83491 1.42334 1.47588 1.42027 1.20317 1.01757 1.12233 1.14260 0.92566 1.25626 1.04407 0.95389 0.93046 1.69712 1.38962 1.26619 1.20433 0.85105 0.75653 0.80796 0.78400 1.18517 1.19309 1.15994 1.20992 0.91825 0.99572 0.88293 1.21617 1.02030 0.91248 1.09547 0.91091 0.91002 0.86042 0.82625 0.82585 0.73658 0.88258 0.89321 0.91181 0.90063 0.82725 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.31 10.50 -92.38 -0.97 -5.28 16 3 C 0.18 2.72 6.69 22.51 0.15 2.87 16 4 C -0.18 -2.77 9.99 22.37 0.22 -2.55 16 5 C 0.02 0.30 9.51 22.25 0.21 0.51 16 6 C -0.71 -14.33 5.06 22.28 0.11 -14.22 16 7 S 2.71 72.21 5.72 -56.49 -0.32 71.88 16 8 O -0.98 -30.11 17.28 -128.00 -2.21 -32.32 16 9 O -0.99 -31.44 16.61 -128.00 -2.13 -33.56 16 10 N -1.10 -31.47 5.26 -172.52 -0.91 -32.38 16 11 C 0.17 5.35 3.42 44.24 0.15 5.50 16 12 H 0.14 3.68 7.50 -2.38 -0.02 3.67 16 13 C -0.16 -3.82 9.45 71.98 0.68 -3.14 16 14 C 0.41 18.47 7.27 71.24 0.52 18.98 16 15 O -0.57 -30.03 15.23 20.76 0.32 -29.71 16 16 O -0.25 -12.47 8.49 14.88 0.13 -12.35 16 17 C -0.41 -24.67 10.10 67.94 0.69 -23.98 16 18 H 0.06 3.89 7.09 -2.91 -0.02 3.87 16 19 C 0.02 0.87 5.49 84.87 0.47 1.34 16 20 N -0.92 -54.84 13.96 21.62 0.30 -54.54 16 21 Si 0.98 41.44 28.62 68.60 1.96 43.40 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 24 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 25 C 0.01 0.22 8.60 22.25 0.19 0.41 16 26 C -0.23 -3.08 9.04 22.37 0.20 -2.88 16 27 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 28 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 29 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.16 2.39 7.61 -2.91 -0.02 2.36 16 32 H 0.43 12.40 8.21 -96.75 -0.79 11.61 16 33 H 0.10 1.69 6.18 -2.39 -0.01 1.68 16 34 H 0.09 2.07 8.12 -2.38 -0.02 2.05 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.29 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.16 2.31 7.61 -2.91 -0.02 2.29 16 38 H 0.17 1.30 6.30 -2.91 -0.02 1.28 16 Total: -1.00 -82.34 344.00 1.20 -81.14 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.32 Total: 19.71 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.71 Total: -15.99 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -0.61 Total: -86.92 kcal Atomic # 8 Polarization: -108.35 SS G_CDS: -4.86 Total: -113.22 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.96 Total: 43.40 kcal Atomic # 16 Polarization: 72.21 SS G_CDS: -0.32 Total: 71.88 kcal Total: -82.34 1.20 -81.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049774757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.450 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds