Wall clock time and date at job start Tue Mar 31 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38264 * 119.94623 * 269.72268 * 16 13 12 18 18 C 1.38145 * 120.05628 * 179.72751 * 17 16 13 19 19 C 1.38730 * 119.94112 * 0.57068 * 18 17 16 20 20 O 1.35900 * 120.05385 * 179.67816 * 19 18 17 21 21 C 1.42901 * 117.00233 * 0.03035 * 20 19 18 22 22 C 1.50697 * 109.47408 * 179.97438 * 21 20 19 23 23 O 1.20826 * 120.00216 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99917 * 179.97438 * 22 21 20 25 25 C 1.38731 * 119.89244 * 359.70865 * 19 18 17 26 26 C 1.38147 * 119.94057 * 359.97438 * 25 19 18 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 32 32 H 1.08003 * 119.97022 * 359.97438 * 17 16 13 33 33 H 1.08000 * 120.02923 * 180.25163 * 18 17 16 34 34 H 1.09007 * 109.46701 * 299.99774 * 21 20 19 35 35 H 1.09002 * 109.47321 * 59.99516 * 21 20 19 36 36 H 0.96703 * 116.99980 * 179.97438 * 24 22 21 37 37 H 1.07994 * 120.02829 * 179.97438 * 25 19 18 38 38 H 1.08003 * 119.97016 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 3.5891 2.4641 -1.6371 18 6 4.6698 3.2587 -1.3068 19 6 5.9603 2.7830 -1.4884 20 8 7.0251 3.5652 -1.1704 21 6 6.7424 4.8670 -0.6531 22 6 8.0356 5.5828 -0.3597 23 8 9.0912 5.0343 -0.5713 24 8 8.0149 6.8297 0.1368 25 6 6.1620 1.5076 -1.9957 26 6 5.0779 0.7144 -2.3182 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.7089 1.1611 3.4845 31 1 2.1109 -1.6561 -1.1950 32 1 2.5843 2.8359 -1.5008 33 1 4.5102 4.2514 -0.9125 34 1 6.1716 5.4340 -1.3886 35 1 6.1620 4.7750 0.2649 36 1 8.8696 7.2478 0.3093 37 1 7.1656 1.1352 -2.1383 38 1 5.2343 -0.2787 -2.7127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:04 Heat of formation + Delta-G solvation = -173.099582 kcal Electronic energy + Delta-G solvation = -25789.688311 eV Core-core repulsion = 21724.980957 eV Total energy + Delta-G solvation = -4064.707354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95632 -39.99134 -37.62626 -36.72395 -36.48885 -35.44338 -35.29621 -32.22301 -31.34993 -30.65924 -29.00038 -28.28927 -25.24412 -23.49574 -22.98259 -21.70492 -20.95956 -19.08876 -18.93790 -18.05333 -17.54214 -17.33168 -17.06931 -16.93895 -16.12889 -15.76308 -15.34002 -15.23171 -14.72618 -14.47737 -13.94287 -13.66214 -13.53672 -13.24222 -12.99594 -12.77004 -12.64755 -12.19691 -12.03738 -11.74621 -11.61849 -11.54279 -11.51617 -11.19043 -11.16616 -11.00270 -10.86993 -10.62247 -10.59156 -10.30826 -10.13522 -9.24192 -9.06377 -8.72069 -8.60390 -8.32292 -6.17444 -4.25370 0.85453 1.13048 1.31490 1.69845 1.86139 3.23089 3.26909 3.28121 3.30324 3.41825 3.80424 4.31491 4.31924 4.41727 4.52999 4.61626 4.70653 4.75610 4.97255 5.14517 5.28277 5.34660 5.56974 5.86662 5.95010 5.99238 6.13565 6.21626 6.30747 6.54314 6.80358 7.02436 7.04243 7.06862 7.40122 7.54868 7.67672 7.79319 8.00285 8.24267 8.77768 9.41153 10.88064 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010029 B = 0.004089 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.275441 B = 6846.042479 C = 8663.775564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.275 3.725 3 H 0.041 0.959 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.277 1.277 12 N -1.100 6.100 13 S 2.693 3.307 14 O -0.983 6.983 15 O -0.964 6.964 16 C -0.698 4.698 17 C 0.031 3.969 18 C -0.229 4.229 19 C 0.173 3.827 20 O -0.294 6.294 21 C 0.064 3.936 22 C 0.484 3.516 23 O -0.492 6.492 24 O -0.510 6.510 25 C -0.168 4.168 26 C 0.021 3.979 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.419 0.581 37 H 0.139 0.861 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 9.096 -5.669 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.171 3.829 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.861 5.861 13 S 2.781 3.219 14 O -0.973 6.973 15 O -0.954 6.954 16 C -0.784 4.784 17 C 0.012 3.988 18 C -0.248 4.248 19 C 0.127 3.873 20 O -0.207 6.207 21 C -0.012 4.012 22 C 0.325 3.675 23 O -0.378 6.378 24 O -0.324 6.324 25 C -0.187 4.187 26 C 0.002 3.998 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.279 0.721 37 H 0.157 0.843 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.307 9.034 -6.475 14.497 hybrid contribution 1.397 -0.065 1.723 2.219 sum 10.704 8.970 -4.752 14.752 Atomic orbital electron populations 1.22247 0.98070 1.00032 1.01500 1.18515 0.91420 0.92089 0.80846 0.94178 1.21268 1.32006 1.13263 0.90033 0.91802 1.24901 0.94819 0.95002 0.99018 1.69865 1.36036 1.22589 1.24009 0.86553 0.79152 0.79809 0.81869 1.21187 1.20090 1.20258 1.55564 1.80794 1.18461 1.31268 1.01765 0.73737 0.73405 0.72999 1.93517 1.82548 1.61749 1.59507 1.93559 1.50536 1.67041 1.84269 1.31076 1.16987 1.11157 1.19156 1.20786 0.99721 0.90731 0.87589 1.21309 0.91711 1.02437 1.09368 1.19154 0.85460 0.90433 0.92222 1.86064 1.31455 1.24833 1.78307 1.21892 0.92862 0.83732 1.02749 1.22606 0.90969 0.79967 0.73980 1.90791 1.32983 1.66437 1.47580 1.84439 1.41868 1.29266 1.76784 1.20464 1.00432 0.92165 1.05671 1.20709 0.90019 0.98654 0.90461 0.95517 0.94864 0.89004 0.92532 0.75648 0.83546 0.84535 0.87064 0.86816 0.72055 0.84287 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.29 37.16 0.35 -3.35 16 2 C 0.28 6.35 2.76 -69.09 -0.19 6.16 16 3 H 0.04 0.96 7.24 -51.93 -0.38 0.58 16 4 C -0.53 -13.21 8.76 -34.44 -0.30 -13.51 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.41 11.32 55.43 0.63 -22.78 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -1.10 -21.36 5.46 -5.88 -0.03 -21.39 16 13 S 2.69 48.98 5.65 -107.50 -0.61 48.37 16 14 O -0.98 -18.69 17.28 -57.17 -0.99 -19.68 16 15 O -0.96 -19.68 16.53 -57.17 -0.95 -20.62 16 16 C -0.70 -11.56 5.82 -39.56 -0.23 -11.79 16 17 C 0.03 0.49 8.91 -39.61 -0.35 0.13 16 18 C -0.23 -3.05 9.04 -39.43 -0.36 -3.41 16 19 C 0.17 2.36 6.69 -39.22 -0.26 2.10 16 20 O -0.29 -3.73 9.67 -39.38 -0.38 -4.11 16 21 C 0.06 0.57 5.33 36.00 0.19 0.76 16 22 C 0.48 4.57 8.40 36.00 0.30 4.87 16 23 O -0.49 -6.59 17.26 -25.48 -0.44 -7.03 16 24 O -0.51 -3.16 13.42 -39.25 -0.53 -3.69 16 25 C -0.17 -2.33 9.99 -39.43 -0.39 -2.72 16 26 C 0.02 0.31 9.51 -39.60 -0.38 -0.07 16 27 H 0.03 0.58 7.64 -51.93 -0.40 0.18 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.41 7.22 8.83 -34.48 -0.30 6.92 16 32 H 0.15 2.24 7.61 -52.48 -0.40 1.84 16 33 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 34 H 0.11 0.70 7.66 -51.92 -0.40 0.30 16 35 H 0.11 0.84 7.66 -51.93 -0.40 0.44 16 36 H 0.42 0.83 9.10 45.56 0.41 1.24 16 37 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.15 1.91 7.61 -52.48 -0.40 1.51 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -34.21 345.30 -8.12 -42.33 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.29 Total: 7.62 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.72 Total: -19.25 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.60 Total: -44.17 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -3.28 Total: -55.13 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 48.98 SS G_CDS: -0.61 Total: 48.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.21 -8.12 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.770 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds