Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35694 * 116.99990 * 2 1 4 4 C 1.39034 * 119.90690 * 0.02562 * 3 2 1 5 5 C 1.37665 * 120.09014 * 180.02562 * 4 3 2 6 6 C 1.39816 * 119.90697 * 359.97438 * 5 4 3 7 7 C 1.47461 * 120.09131 * 179.97438 * 6 5 4 8 8 O 1.21505 * 120.00061 * 180.02562 * 7 6 5 9 9 O 1.34747 * 120.00222 * 359.97438 * 7 6 5 10 10 C 1.39771 * 119.81384 * 359.97438 * 6 5 4 11 11 C 1.37699 * 119.90649 * 0.03098 * 10 6 5 12 12 S 1.76204 * 119.95098 * 180.26804 * 11 10 6 13 13 O 1.42096 * 106.40166 * 358.06756 * 12 11 10 14 14 O 1.42102 * 106.39881 * 130.98802 * 12 11 10 15 15 N 1.65603 * 107.21959 * 244.52607 * 12 11 10 16 16 C 1.46494 * 119.99642 * 64.16982 * 15 12 11 17 17 H 1.08997 * 109.47573 * 336.06057 * 16 15 12 18 18 C 1.53006 * 109.46798 * 96.06411 * 16 15 12 19 19 C 1.50708 * 109.47159 * 216.06084 * 16 15 12 20 20 H 1.07997 * 119.99786 * 0.02562 * 19 16 15 21 21 C 1.37870 * 120.00040 * 180.02562 * 19 16 15 22 22 N 1.31518 * 120.00489 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 119.99906 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47500 * 119.99498 * 23 21 19 26 26 H 1.48502 * 109.46829 * 239.99591 * 23 21 19 27 27 H 1.09003 * 109.46476 * 60.00249 * 1 2 3 28 28 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47325 * 300.01107 * 1 2 3 30 30 H 1.07993 * 119.95630 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.04618 * 180.02562 * 5 4 3 32 32 H 0.96699 * 117.00347 * 180.02562 * 9 7 6 33 33 H 1.07999 * 120.04602 * 180.02562 * 10 6 5 34 34 H 0.96995 * 119.99921 * 244.17304 * 15 12 11 35 35 H 1.08996 * 109.46881 * 299.99521 * 18 16 15 36 36 H 1.09003 * 109.47170 * 59.99922 * 18 16 15 37 37 H 1.09001 * 109.46566 * 179.97438 * 18 16 15 38 38 H 0.96992 * 120.00254 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2860 2.3739 0.0005 5 6 1.9070 3.6024 0.0000 6 6 3.3032 3.6778 -0.0005 7 6 3.9726 4.9917 -0.0017 8 8 5.1860 5.0553 -0.0026 9 8 3.2388 6.1218 -0.0027 10 6 4.0624 2.5043 0.0000 11 6 3.4332 1.2795 0.0004 12 16 4.3893 -0.2006 0.0083 13 8 5.7516 0.2014 -0.0329 14 8 3.8515 -1.0201 1.0371 15 7 4.0899 -0.9852 -1.4191 16 6 4.4806 -0.3691 -2.6894 17 1 4.5458 0.7117 -2.5642 18 6 5.8422 -0.9154 -3.1237 19 6 3.4511 -0.6916 -3.7418 20 1 2.5916 -1.2948 -3.4894 21 6 3.6066 -0.2166 -5.0267 22 7 4.6530 0.5184 -5.3341 23 14 2.3302 -0.6158 -6.3309 24 1 1.2576 -1.4517 -5.7343 25 1 1.7436 0.6450 -6.8517 26 1 2.9750 -1.3584 -7.4435 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 0.2077 2.3148 0.0014 31 1 1.3167 4.5068 0.0008 32 1 3.7223 6.9593 -0.0038 33 1 5.1411 2.5582 0.0000 34 1 3.6558 -1.8526 -1.4139 35 1 6.5868 -0.6821 -2.3626 36 1 5.7769 -1.9962 -3.2489 37 1 6.1327 -0.4573 -4.0691 38 1 4.7622 0.8529 -6.2379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -173.972295 kcal Electronic energy + Delta-G solvation = -26965.539042 eV Core-core repulsion = 22900.793845 eV Total energy + Delta-G solvation = -4064.745198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66261 -39.82896 -37.46393 -36.54389 -36.09098 -35.38439 -35.24924 -32.18352 -31.67927 -30.69433 -28.24154 -27.70181 -25.20435 -24.30279 -23.39810 -21.37651 -20.88259 -19.34232 -18.37446 -18.14453 -17.47220 -17.16069 -16.54008 -16.09427 -15.80042 -15.72101 -15.59279 -15.18402 -14.59606 -14.50357 -13.96250 -13.82026 -13.52625 -12.92907 -12.90849 -12.59867 -12.19387 -12.08777 -11.75915 -11.68211 -11.65290 -11.53787 -11.40179 -11.24469 -11.14497 -11.01722 -10.73452 -10.54857 -10.46444 -10.26046 -10.11351 -9.52973 -9.17676 -8.62932 -8.57944 -8.27419 -6.13263 -4.21454 0.58094 0.89370 1.11853 2.40297 2.90499 3.01302 3.20535 3.29113 3.31233 3.45389 3.74722 4.28319 4.32906 4.51417 4.60039 4.87562 4.89933 5.01536 5.07382 5.18099 5.27431 5.40931 5.45728 5.60556 5.81881 5.91901 6.02033 6.37200 6.38672 6.41732 6.86182 7.00091 7.09627 7.12780 7.59987 7.72673 7.84178 7.86713 8.05983 8.29666 8.82459 9.44609 10.92369 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.005403 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.840290 B = 5181.146057 C = 5605.720280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.270 3.730 4 C -0.244 4.244 5 C 0.025 3.975 6 C -0.194 4.194 7 C 0.533 3.467 8 O -0.511 6.511 9 O -0.516 6.516 10 C 0.085 3.915 11 C -0.711 4.711 12 S 2.696 3.304 13 O -0.962 6.962 14 O -0.971 6.971 15 N -1.092 6.092 16 C 0.274 3.726 17 H 0.040 0.960 18 C -0.158 4.158 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.413 0.587 33 H 0.164 0.836 34 H 0.410 0.590 35 H 0.026 0.974 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 6.043 10.144 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.220 3.780 4 C -0.263 4.263 5 C 0.007 3.993 6 C -0.196 4.196 7 C 0.378 3.622 8 O -0.400 6.400 9 O -0.328 6.328 10 C 0.066 3.934 11 C -0.795 4.795 12 S 2.782 3.218 13 O -0.952 6.952 14 O -0.961 6.961 15 N -0.854 5.854 16 C 0.170 3.830 17 H 0.057 0.943 18 C -0.217 4.217 19 C -0.562 4.562 20 H 0.083 0.917 21 C -0.139 4.139 22 N -0.523 5.523 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.209 1.209 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.272 0.728 33 H 0.181 0.819 34 H 0.244 0.756 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.489 5.517 10.653 14.697 hybrid contribution -1.391 0.808 -1.256 2.041 sum -9.880 6.324 9.398 15.031 Atomic orbital electron populations 1.23269 0.76839 1.05132 1.01825 1.86155 1.22882 1.25897 1.85482 1.18617 0.90494 0.85058 0.83852 1.21266 1.00739 0.91831 1.12446 1.21399 0.93104 0.97943 0.86882 1.18899 0.93930 0.90204 1.16552 1.20619 0.85024 0.84454 0.72128 1.90928 1.14989 1.87785 1.46283 1.84530 1.44705 1.17339 1.86250 1.20930 1.01288 0.88510 0.82662 1.30482 1.04315 1.20561 1.24147 1.01809 0.73851 0.73024 0.73092 1.93574 1.31327 1.83400 1.86866 1.93536 1.80418 1.66142 1.55955 1.55470 1.76699 1.30988 1.22266 1.18527 0.93175 0.92399 0.78879 0.94271 1.22227 0.97148 0.99787 1.02557 1.21322 1.07390 1.33504 0.94001 0.91715 1.24925 0.95716 0.94906 0.98381 1.69893 1.27695 1.34571 1.20152 0.86462 0.81397 0.78071 0.81565 1.19767 1.21063 1.20851 0.91590 0.87244 0.92058 0.83794 0.83664 0.72817 0.81889 0.75554 0.95521 0.94856 0.89022 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.29 -4.45 9.27 -28.32 -0.26 -4.72 16 3 C 0.27 4.29 6.65 -39.01 -0.26 4.03 16 4 C -0.24 -3.07 9.01 -39.50 -0.36 -3.43 16 5 C 0.03 0.31 9.61 -39.20 -0.38 -0.06 16 6 C -0.19 -2.92 5.87 -104.98 -0.62 -3.54 16 7 C 0.53 7.63 8.26 34.49 0.28 7.92 16 8 O -0.51 -8.88 17.13 -19.27 -0.33 -9.21 16 9 O -0.52 -5.18 12.67 -40.62 -0.51 -5.69 16 10 C 0.09 1.49 9.08 -39.21 -0.36 1.13 16 11 C -0.71 -12.83 5.70 -39.50 -0.22 -13.05 16 12 S 2.70 53.46 5.22 -107.50 -0.56 52.90 16 13 O -0.96 -21.13 16.35 -57.17 -0.93 -22.07 16 14 O -0.97 -19.90 17.31 -62.44 -1.08 -20.98 16 15 N -1.09 -22.47 5.45 -5.88 -0.03 -22.50 16 16 C 0.27 6.63 2.77 -69.08 -0.19 6.44 16 17 H 0.04 1.01 7.81 -51.93 -0.41 0.61 16 18 C -0.16 -3.83 9.29 37.16 0.35 -3.48 16 19 C -0.52 -13.34 8.76 -34.44 -0.30 -13.64 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 23 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 30 H 0.14 1.28 6.28 -52.49 -0.33 0.95 16 31 H 0.15 1.33 7.60 -52.49 -0.40 0.93 16 32 H 0.41 2.25 9.11 45.56 0.42 2.66 16 33 H 0.16 2.92 6.91 -52.49 -0.36 2.56 16 34 H 0.41 7.67 8.84 -34.47 -0.30 7.36 16 35 H 0.03 0.61 7.75 -51.93 -0.40 0.21 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -34.47 343.77 -7.37 -41.84 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.29 Total: 8.55 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.16 Total: -14.90 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.60 Total: -46.05 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -3.12 Total: -62.66 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.56 Total: 52.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.47 -7.37 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.132 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds