Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35694 * 116.99990 * 2 1 4 4 C 1.39034 * 119.90690 * 0.02562 * 3 2 1 5 5 C 1.37665 * 120.09014 * 180.02562 * 4 3 2 6 6 C 1.39816 * 119.90697 * 359.97438 * 5 4 3 7 7 C 1.47461 * 120.09131 * 179.97438 * 6 5 4 8 8 O 1.21505 * 120.00061 * 180.02562 * 7 6 5 9 9 O 1.34747 * 120.00222 * 359.97438 * 7 6 5 10 10 C 1.39771 * 119.81384 * 359.97438 * 6 5 4 11 11 C 1.37699 * 119.90649 * 0.03098 * 10 6 5 12 12 S 1.76204 * 119.95098 * 180.26804 * 11 10 6 13 13 O 1.42096 * 106.40166 * 358.06756 * 12 11 10 14 14 O 1.42102 * 106.39881 * 130.98802 * 12 11 10 15 15 N 1.65603 * 107.21959 * 244.52607 * 12 11 10 16 16 C 1.46494 * 119.99642 * 64.16982 * 15 12 11 17 17 H 1.08997 * 109.47573 * 336.06057 * 16 15 12 18 18 C 1.53006 * 109.46798 * 96.06411 * 16 15 12 19 19 C 1.50708 * 109.47159 * 216.06084 * 16 15 12 20 20 H 1.07997 * 119.99786 * 0.02562 * 19 16 15 21 21 C 1.37870 * 120.00040 * 180.02562 * 19 16 15 22 22 N 1.31518 * 120.00489 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 119.99906 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47500 * 119.99498 * 23 21 19 26 26 H 1.48502 * 109.46829 * 239.99591 * 23 21 19 27 27 H 1.09003 * 109.46476 * 60.00249 * 1 2 3 28 28 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47325 * 300.01107 * 1 2 3 30 30 H 1.07993 * 119.95630 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.04618 * 180.02562 * 5 4 3 32 32 H 0.96699 * 117.00347 * 180.02562 * 9 7 6 33 33 H 1.07999 * 120.04602 * 180.02562 * 10 6 5 34 34 H 0.96995 * 119.99921 * 244.17304 * 15 12 11 35 35 H 1.08996 * 109.46881 * 299.99521 * 18 16 15 36 36 H 1.09003 * 109.47170 * 59.99922 * 18 16 15 37 37 H 1.09001 * 109.46566 * 179.97438 * 18 16 15 38 38 H 0.96992 * 120.00254 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2860 2.3739 0.0005 5 6 1.9070 3.6024 0.0000 6 6 3.3032 3.6778 -0.0005 7 6 3.9726 4.9917 -0.0017 8 8 5.1860 5.0553 -0.0026 9 8 3.2388 6.1218 -0.0027 10 6 4.0624 2.5043 0.0000 11 6 3.4332 1.2795 0.0004 12 16 4.3893 -0.2006 0.0083 13 8 5.7516 0.2014 -0.0329 14 8 3.8515 -1.0201 1.0371 15 7 4.0899 -0.9852 -1.4191 16 6 4.4806 -0.3691 -2.6894 17 1 4.5458 0.7117 -2.5642 18 6 5.8422 -0.9154 -3.1237 19 6 3.4511 -0.6916 -3.7418 20 1 2.5916 -1.2948 -3.4894 21 6 3.6066 -0.2166 -5.0267 22 7 4.6530 0.5184 -5.3341 23 14 2.3302 -0.6158 -6.3309 24 1 1.2576 -1.4517 -5.7343 25 1 1.7436 0.6450 -6.8517 26 1 2.9750 -1.3584 -7.4435 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 0.2077 2.3148 0.0014 31 1 1.3167 4.5068 0.0008 32 1 3.7223 6.9593 -0.0038 33 1 5.1411 2.5582 0.0000 34 1 3.6558 -1.8526 -1.4139 35 1 6.5868 -0.6821 -2.3626 36 1 5.7769 -1.9962 -3.2489 37 1 6.1327 -0.4573 -4.0691 38 1 4.7622 0.8529 -6.2379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -201.237329 kcal Electronic energy + Delta-G solvation = -26966.721343 eV Core-core repulsion = 22900.793845 eV Total energy + Delta-G solvation = -4065.927498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74933 -40.88900 -38.61657 -38.11793 -37.23369 -37.11509 -36.90527 -34.10424 -32.81769 -31.79478 -30.12120 -28.54604 -27.22218 -25.36094 -24.57750 -22.87408 -22.37523 -20.71069 -19.72499 -19.24251 -19.03082 -18.43916 -17.96416 -17.49829 -17.03981 -16.95269 -16.90289 -16.64006 -16.20380 -15.63817 -15.35484 -14.95960 -14.83239 -14.51698 -14.06490 -13.95058 -13.90007 -13.49767 -13.27141 -13.19014 -13.05976 -12.98682 -12.83714 -12.78761 -12.65798 -12.33541 -12.22874 -12.17522 -11.99085 -11.88188 -11.72646 -11.09842 -10.70429 -10.56432 -10.10267 -9.70211 -8.11264 -6.26266 -0.58154 -0.45683 -0.23311 1.29969 1.44642 1.47610 1.58113 1.90649 2.02115 2.12733 2.37299 2.47210 2.75961 3.18307 3.35444 3.57610 3.73450 3.87592 4.03268 4.24315 4.32747 4.42562 4.49144 4.51765 4.72360 4.75229 4.90763 4.92159 4.95948 5.11542 5.16038 5.32287 5.51367 5.60444 5.74085 6.02032 6.03332 6.11229 6.44386 6.85377 6.91731 7.43459 8.94550 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.005403 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.840290 B = 5181.146057 C = 5605.720280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.319 6.319 3 C 0.258 3.742 4 C -0.231 4.231 5 C 0.042 3.958 6 C -0.206 4.206 7 C 0.540 3.460 8 O -0.552 6.552 9 O -0.495 6.495 10 C 0.061 3.939 11 C -0.733 4.733 12 S 2.708 3.292 13 O -0.995 6.995 14 O -0.980 6.980 15 N -1.091 6.091 16 C 0.281 3.719 17 H 0.016 0.984 18 C -0.153 4.153 19 C -0.530 4.530 20 H 0.072 0.928 21 C 0.015 3.985 22 N -0.917 5.917 23 Si 0.962 3.038 24 H -0.260 1.260 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.190 0.810 31 H 0.189 0.811 32 H 0.436 0.564 33 H 0.141 0.859 34 H 0.418 0.582 35 H 0.025 0.975 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 6.941 10.157 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.230 6.230 3 C 0.208 3.792 4 C -0.250 4.250 5 C 0.024 3.976 6 C -0.208 4.208 7 C 0.386 3.614 8 O -0.445 6.445 9 O -0.309 6.309 10 C 0.041 3.959 11 C -0.821 4.821 12 S 2.798 3.202 13 O -0.985 6.985 14 O -0.970 6.970 15 N -0.852 5.852 16 C 0.175 3.825 17 H 0.034 0.966 18 C -0.213 4.213 19 C -0.570 4.570 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.556 5.556 23 Si 0.788 3.212 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.298 0.702 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.183 6.382 10.683 17.415 hybrid contribution -0.342 0.607 -1.190 1.379 sum -12.525 6.989 9.494 17.200 Atomic orbital electron populations 1.23724 0.74088 1.06958 1.03842 1.86128 1.25797 1.25872 1.85180 1.18840 0.89896 0.86680 0.83815 1.21773 1.02734 0.90376 1.10131 1.21885 0.91836 0.99633 0.84261 1.19080 0.95357 0.89728 1.16663 1.20522 0.84414 0.85261 0.71164 1.90918 1.16811 1.88425 1.48338 1.84458 1.43918 1.17382 1.85171 1.20841 1.00739 0.89775 0.84518 1.29988 1.05636 1.19110 1.27393 1.01093 0.73295 0.73318 0.72502 1.93524 1.33880 1.83959 1.87110 1.93509 1.80470 1.67144 1.55906 1.55238 1.76936 1.31691 1.21334 1.18236 0.92932 0.91284 0.80029 0.96595 1.22150 0.97560 1.00079 1.01480 1.21589 1.07681 1.33329 0.94382 0.90961 1.25726 0.97514 0.94750 1.00469 1.70031 1.29421 1.35589 1.20585 0.85440 0.79179 0.77876 0.78712 1.18432 1.20847 1.20997 0.90224 0.85799 0.89243 0.79257 0.79408 0.70204 0.84098 0.74667 0.95571 0.93988 0.91048 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -9.09 9.27 -81.02 -0.75 -9.84 16 3 C 0.26 7.81 6.65 22.64 0.15 7.96 16 4 C -0.23 -4.95 9.01 22.33 0.20 -4.75 16 5 C 0.04 0.88 9.61 22.52 0.22 1.10 16 6 C -0.21 -6.02 5.87 -20.09 -0.12 -6.14 16 7 C 0.54 14.96 8.26 70.25 0.58 15.54 16 8 O -0.55 -19.63 17.13 19.82 0.34 -19.29 16 9 O -0.50 -8.44 12.67 -56.58 -0.72 -9.15 16 10 C 0.06 2.21 9.08 22.51 0.20 2.41 16 11 C -0.73 -26.94 5.70 22.32 0.13 -26.82 16 12 S 2.71 111.54 5.22 -56.49 -0.29 111.24 16 13 O -0.99 -46.46 16.35 -128.00 -2.09 -48.55 16 14 O -0.98 -41.02 17.31 -122.97 -2.13 -43.14 16 15 N -1.09 -45.93 5.45 -172.52 -0.94 -46.87 16 16 C 0.28 13.91 2.77 44.25 0.12 14.03 16 17 H 0.02 0.88 7.81 -2.39 -0.02 0.86 16 18 C -0.15 -7.69 9.29 71.98 0.67 -7.02 16 19 C -0.53 -27.04 8.76 25.60 0.22 -26.82 16 20 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 21 C 0.02 0.80 5.30 84.65 0.45 1.24 16 22 N -0.92 -50.86 11.32 21.45 0.24 -50.61 16 23 Si 0.96 40.72 29.54 68.60 2.03 42.74 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H 0.08 1.06 7.65 -2.39 -0.02 1.04 16 28 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 0.92 7.65 -2.39 -0.02 0.90 16 30 H 0.19 2.24 6.28 -2.91 -0.02 2.22 16 31 H 0.19 2.35 7.60 -2.91 -0.02 2.32 16 32 H 0.44 3.44 9.11 -74.06 -0.67 2.77 16 33 H 0.14 5.56 6.91 -2.91 -0.02 5.54 16 34 H 0.42 15.82 8.84 -96.75 -0.86 14.97 16 35 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 38 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -76.98 343.77 -0.77 -77.75 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.39 Total: 23.76 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.94 Total: -28.03 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -0.70 Total: -97.48 kcal Atomic # 8 Polarization: -124.63 SS G_CDS: -5.35 Total: -129.98 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 111.54 SS G_CDS: -0.29 Total: 111.24 kcal Total: -76.98 -0.77 -77.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.492 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds