Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35707 * 116.99714 * 2 1 4 4 C 1.39036 * 119.90567 * 0.02562 * 3 2 1 5 5 C 1.37661 * 120.08560 * 179.97438 * 4 3 2 6 6 C 1.39803 * 119.91139 * 0.02562 * 5 4 3 7 7 C 1.47465 * 120.09696 * 180.02562 * 6 5 4 8 8 O 1.21507 * 120.00615 * 180.02562 * 7 6 5 9 9 O 1.34753 * 119.99502 * 359.97438 * 7 6 5 10 10 C 1.39777 * 119.81343 * 359.73178 * 6 5 4 11 11 C 1.37693 * 119.90813 * 0.53795 * 10 6 5 12 12 S 1.76197 * 119.95761 * 179.73011 * 11 10 6 13 13 O 1.42092 * 106.40184 * 1.19273 * 12 11 10 14 14 O 1.42095 * 106.40618 * 228.26618 * 12 11 10 15 15 N 1.65612 * 107.21596 * 114.72839 * 12 11 10 16 16 C 1.46502 * 119.99728 * 65.00228 * 15 12 11 17 17 H 1.09001 * 109.46987 * 24.99928 * 16 15 12 18 18 C 1.52999 * 109.47042 * 264.99876 * 16 15 12 19 19 C 1.50703 * 109.46940 * 144.99777 * 16 15 12 20 20 H 1.07999 * 119.99724 * 88.26464 * 19 16 15 21 21 C 1.37873 * 119.99972 * 268.26920 * 19 16 15 22 22 N 1.31522 * 119.99864 * 173.08796 * 21 19 16 23 23 Si 1.86804 * 120.00167 * 353.08192 * 21 19 16 24 24 H 1.48503 * 109.46738 * 84.93431 * 23 21 19 25 25 H 1.48501 * 109.47014 * 204.92982 * 23 21 19 26 26 H 1.48496 * 109.46903 * 324.93281 * 23 21 19 27 27 H 1.08997 * 109.47618 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47184 * 300.00300 * 1 2 3 29 29 H 1.09004 * 109.47516 * 59.99694 * 1 2 3 30 30 H 1.07993 * 119.95223 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.03942 * 180.02562 * 5 4 3 32 32 H 0.96701 * 116.99417 * 179.97438 * 9 7 6 33 33 H 1.08007 * 120.04667 * 180.29718 * 10 6 5 34 34 H 0.97000 * 119.99803 * 245.00239 * 15 12 11 35 35 H 1.08997 * 109.46509 * 173.01343 * 18 16 15 36 36 H 1.08994 * 109.46977 * 53.01684 * 18 16 15 37 37 H 1.08998 * 109.46939 * 293.01002 * 18 16 15 38 38 H 0.96998 * 119.99853 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2858 2.3740 0.0005 5 6 1.9068 3.6025 0.0011 6 6 3.3028 3.6780 0.0005 7 6 3.9724 4.9919 0.0017 8 8 5.1858 5.0555 0.0007 9 8 3.2384 6.1220 0.0027 10 6 4.0622 2.5045 0.0051 11 6 3.4332 1.2796 -0.0010 12 16 4.3892 -0.2004 -0.0025 13 8 5.7516 0.2019 0.0320 14 8 3.8484 -1.0266 -1.0242 15 7 4.0943 -0.9758 1.4309 16 6 2.7540 -1.4902 1.7231 17 1 2.2268 -1.6823 0.7886 18 6 1.9787 -0.4570 2.5430 19 6 2.8679 -2.7716 2.5081 20 1 2.9237 -2.7412 3.5862 21 6 2.9008 -3.9826 1.8499 22 7 3.1363 -5.0893 2.5205 23 14 2.6110 -4.0517 0.0058 24 1 3.8877 -3.7899 -0.7060 25 1 2.1041 -5.3973 -0.3655 26 1 1.6108 -3.0230 -0.3769 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2075 2.3147 0.0005 31 1 1.3163 4.5068 0.0019 32 1 3.7220 6.9594 0.0038 33 1 5.1409 2.5584 0.0096 34 1 4.8089 -1.0894 2.0769 35 1 0.9448 -0.7835 2.6547 36 1 2.0027 0.5050 2.0312 37 1 2.4364 -0.3566 3.5271 38 1 3.1591 -5.9414 2.0575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -165.247335 kcal Electronic energy + Delta-G solvation = -27487.385973 eV Core-core repulsion = 23423.019118 eV Total energy + Delta-G solvation = -4064.366855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85115 -40.02147 -37.59719 -36.48226 -36.25612 -35.44170 -35.17128 -32.22375 -31.77161 -30.81405 -29.02586 -27.70083 -25.52872 -24.40519 -23.48046 -21.45205 -20.66451 -19.34317 -18.58342 -18.17662 -17.82169 -17.35336 -16.55887 -16.24506 -15.94631 -15.81140 -15.73879 -15.26272 -14.63100 -14.44568 -14.07189 -13.92376 -13.52805 -13.04364 -13.00144 -12.94715 -12.36925 -12.14168 -12.02007 -11.78974 -11.75868 -11.65955 -11.46061 -11.39776 -11.16482 -11.01462 -10.88541 -10.69221 -10.43414 -10.29805 -9.75988 -9.67866 -9.15246 -8.74170 -8.66434 -8.37970 -6.29848 -4.33558 0.44997 0.76549 1.07497 2.25255 2.77470 2.98928 3.29394 3.37521 3.44713 3.61054 3.80079 4.24956 4.37022 4.44452 4.49748 4.74914 4.79196 5.01887 5.09003 5.13698 5.25030 5.35460 5.47427 5.52599 5.73897 5.80581 5.88745 6.05161 6.22898 6.24291 6.29387 6.40042 6.48545 6.96954 6.99383 7.34715 7.54710 7.67687 8.00995 8.35215 8.76937 9.32695 10.78784 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.004833 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.604520 B = 5792.003476 C = 6327.248295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.284 6.284 3 C 0.267 3.733 4 C -0.244 4.244 5 C 0.023 3.977 6 C -0.199 4.199 7 C 0.533 3.467 8 O -0.514 6.514 9 O -0.516 6.516 10 C 0.081 3.919 11 C -0.715 4.715 12 S 2.659 3.341 13 O -0.984 6.984 14 O -0.952 6.952 15 N -1.088 6.088 16 C 0.218 3.782 17 H 0.078 0.922 18 C -0.145 4.145 19 C -0.503 4.503 20 H 0.080 0.920 21 C 0.084 3.916 22 N -0.875 5.875 23 Si 0.871 3.129 24 H -0.259 1.259 25 H -0.292 1.292 26 H -0.253 1.253 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.414 0.586 33 H 0.161 0.839 34 H 0.409 0.591 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 17.710 -4.456 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.194 6.194 3 C 0.217 3.783 4 C -0.264 4.264 5 C 0.004 3.996 6 C -0.201 4.201 7 C 0.378 3.622 8 O -0.403 6.403 9 O -0.328 6.328 10 C 0.061 3.939 11 C -0.798 4.798 12 S 2.748 3.252 13 O -0.974 6.974 14 O -0.942 6.942 15 N -0.852 5.852 16 C 0.116 3.884 17 H 0.096 0.904 18 C -0.204 4.204 19 C -0.546 4.546 20 H 0.098 0.902 21 C -0.124 4.124 22 N -0.511 5.511 23 Si 0.697 3.303 24 H -0.184 1.184 25 H -0.219 1.219 26 H -0.178 1.178 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.272 0.728 33 H 0.179 0.821 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.882 16.792 -5.322 18.912 hybrid contribution -0.236 1.110 -0.321 1.179 sum -7.118 17.902 -5.644 20.075 Atomic orbital electron populations 1.23330 0.76973 1.05678 1.01651 1.86488 1.22990 1.24988 1.84930 1.18684 0.90692 0.85518 0.83371 1.21320 1.00896 0.91746 1.12402 1.21396 0.93050 0.97959 0.87145 1.18903 0.93966 0.90115 1.17131 1.20656 0.84998 0.84494 0.72072 1.90925 1.15045 1.87830 1.46507 1.84540 1.44696 1.17358 1.86190 1.20889 1.01115 0.88480 0.83368 1.30732 1.04504 1.20837 1.23770 1.03350 0.72860 0.73305 0.75700 1.93501 1.32771 1.83598 1.87512 1.93568 1.80007 1.63956 1.56676 1.56997 1.21380 1.69700 1.37153 1.19328 0.78842 0.92813 0.97387 0.90412 1.22285 1.00421 0.97354 1.00349 1.21181 1.50211 0.88107 0.95061 0.90210 1.25199 0.92757 0.95586 0.98875 1.69939 1.45203 0.98778 1.37149 0.86913 0.81687 0.76738 0.84921 1.18397 1.21880 1.17789 0.86856 0.91521 0.92013 0.83665 0.83720 0.72772 0.82143 0.75501 0.92710 0.95582 0.93329 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.54 101.05 0.96 1.16 16 2 O -0.28 -4.49 4.38 -28.78 -0.13 -4.62 16 3 C 0.27 3.99 4.35 -39.00 -0.17 3.82 16 4 C -0.24 -2.74 9.01 -39.50 -0.36 -3.09 16 5 C 0.02 0.24 9.61 -39.21 -0.38 -0.13 16 6 C -0.20 -2.60 5.87 -104.98 -0.62 -3.22 16 7 C 0.53 6.56 8.26 34.49 0.28 6.85 16 8 O -0.51 -7.89 17.13 -19.27 -0.33 -8.22 16 9 O -0.52 -4.25 12.67 -40.64 -0.51 -4.76 16 10 C 0.08 1.25 9.08 -39.21 -0.36 0.89 16 11 C -0.72 -12.03 5.60 -39.50 -0.22 -12.25 16 12 S 2.66 53.97 5.44 -107.50 -0.59 53.39 16 13 O -0.98 -21.07 16.96 -57.18 -0.97 -22.04 16 14 O -0.95 -21.94 15.55 -62.55 -0.97 -22.91 16 15 N -1.09 -22.44 5.46 -5.88 -0.03 -22.47 16 16 C 0.22 4.70 1.75 -69.08 -0.12 4.58 16 17 H 0.08 1.74 2.37 -51.93 -0.12 1.61 16 18 C -0.14 -2.59 8.08 37.16 0.30 -2.29 16 19 C -0.50 -12.89 9.10 -34.44 -0.31 -13.20 16 20 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 22 N -0.87 -25.09 13.96 55.43 0.77 -24.32 16 23 Si 0.87 21.74 26.31 -169.99 -4.47 17.27 16 24 H -0.26 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.25 -5.92 6.34 56.52 0.36 -5.57 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.56 7.65 -51.92 -0.40 0.16 16 29 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 30 H 0.15 1.14 6.27 -52.49 -0.33 0.81 16 31 H 0.15 1.09 7.60 -52.49 -0.40 0.70 16 32 H 0.41 1.53 9.11 45.56 0.42 1.95 16 33 H 0.16 2.55 6.91 -52.48 -0.36 2.19 16 34 H 0.41 7.95 8.83 -34.48 -0.30 7.64 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.41 4.59 -51.93 -0.24 0.17 16 37 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -35.04 325.90 -6.40 -41.44 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.00 Total: 7.04 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.08 Total: -14.71 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.74 Total: -46.79 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -2.91 Total: -62.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.47 Total: 17.27 kcal Atomic # 16 Polarization: 53.97 SS G_CDS: -0.59 Total: 53.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.04 -6.40 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.806 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds