Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35636 * 117.00030 * 2 1 4 4 C 1.38701 * 120.15677 * 359.97438 * 3 2 1 5 5 C 1.38048 * 120.09375 * 179.97438 * 4 3 2 6 6 C 1.38566 * 120.40513 * 0.02562 * 5 4 3 7 7 S 1.76197 * 119.85183 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.40066 * 336.45630 * 7 6 5 9 9 O 1.42094 * 106.40532 * 203.53994 * 7 6 5 10 10 N 1.65598 * 107.21704 * 89.99604 * 7 6 5 11 11 C 1.46497 * 120.00015 * 65.00663 * 10 7 6 12 12 H 1.09005 * 109.46665 * 334.99483 * 11 10 7 13 13 C 1.52994 * 109.47345 * 94.99636 * 11 10 7 14 14 C 1.50697 * 109.46902 * 214.99883 * 11 10 7 15 15 H 1.08001 * 120.00156 * 326.15238 * 14 11 10 16 16 C 1.37882 * 120.00020 * 146.15615 * 14 11 10 17 17 N 1.31516 * 119.99836 * 178.41756 * 16 14 11 18 18 Si 1.86797 * 119.99806 * 358.41390 * 16 14 11 19 19 H 1.48501 * 109.47019 * 274.91047 * 18 16 14 20 20 H 1.48491 * 109.47354 * 34.91558 * 18 16 14 21 21 H 1.48501 * 109.46886 * 154.91675 * 18 16 14 22 22 C 1.37772 * 120.30166 * 0.25256 * 6 5 4 23 23 C 1.39762 * 119.90380 * 359.49432 * 22 6 5 24 24 C 1.47394 * 120.20037 * 180.25282 * 23 22 6 25 25 O 1.21507 * 120.00472 * 180.24895 * 24 23 22 26 26 O 1.34759 * 119.99835 * 0.25060 * 24 23 22 27 27 H 1.09003 * 109.47505 * 300.00133 * 1 2 3 28 28 H 1.08999 * 109.47325 * 60.00046 * 1 2 3 29 29 H 1.09004 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.95385 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.80147 * 179.97438 * 5 4 3 32 32 H 0.97004 * 119.99807 * 245.00089 * 10 7 6 33 33 H 1.09000 * 109.47412 * 54.55901 * 13 11 10 34 34 H 1.09006 * 109.47180 * 174.55925 * 13 11 10 35 35 H 1.08996 * 109.47118 * 294.55814 * 13 11 10 36 36 H 0.97001 * 119.99870 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.04222 * 179.74645 * 22 6 5 38 38 H 0.96699 * 117.00092 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2925 2.3738 -0.0005 5 6 1.9206 3.6032 0.0000 6 6 3.3039 3.6839 0.0005 7 16 4.0904 5.2606 0.0005 8 8 3.1513 6.1774 -0.5446 9 8 5.3880 5.0619 -0.5433 10 7 4.3084 5.6996 1.5823 11 6 5.2052 4.9224 2.4412 12 1 5.2830 3.9047 2.0587 13 6 6.5909 5.5709 2.4511 14 6 4.6552 4.8911 3.8439 15 1 4.1196 5.7444 4.2331 16 6 4.8358 3.7731 4.6304 17 7 4.3829 3.7576 5.8651 18 14 5.7235 2.2805 3.9423 19 1 4.7582 1.4276 3.2034 20 1 6.7982 2.7257 3.0194 21 1 6.3196 1.5017 5.0573 22 6 4.0672 2.5370 -0.0047 23 6 3.4446 1.2857 0.0001 24 6 4.2549 0.0544 0.0002 25 8 3.7100 -1.0316 -0.0002 26 8 5.6002 0.1332 0.0007 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2138 2.3194 -0.0005 31 1 1.3302 4.5076 -0.0008 32 1 3.8424 6.4715 1.9401 33 1 6.5002 6.6176 2.7414 34 1 7.2306 5.0503 3.1639 35 1 7.0292 5.5067 1.4552 36 1 4.5102 2.9713 6.4186 37 1 5.1450 2.6048 -0.0084 38 1 6.0888 -0.7013 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = -173.253398 kcal Electronic energy + Delta-G solvation = -27105.193013 eV Core-core repulsion = 23040.478989 eV Total energy + Delta-G solvation = -4064.714024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85287 -39.46131 -37.64334 -36.88489 -35.96898 -35.63594 -35.44902 -32.29619 -31.80685 -30.65176 -29.09537 -27.71255 -25.31261 -24.86233 -22.78969 -21.83261 -20.85288 -19.22348 -18.55363 -18.06552 -17.87159 -17.21711 -16.47065 -16.29348 -16.15398 -16.00729 -15.60247 -15.37145 -14.77150 -14.50742 -14.00547 -13.62163 -13.42898 -13.16996 -13.01105 -12.79508 -12.61129 -12.33155 -11.98294 -11.86243 -11.72621 -11.64274 -11.51977 -11.49688 -11.48886 -11.14473 -10.94172 -10.76236 -10.58430 -10.40613 -9.90639 -9.39374 -9.32514 -8.85650 -8.80858 -8.56177 -6.29335 -4.30652 0.50867 0.77481 0.97063 2.41735 2.86459 2.97116 3.14486 3.24672 3.27743 3.34617 3.61282 4.14614 4.23077 4.36212 4.53438 4.73882 4.86833 4.90899 5.02222 5.06345 5.20357 5.24188 5.31227 5.49752 5.65140 5.88773 5.91061 5.92921 6.27875 6.34853 6.47761 6.57817 6.62799 6.97225 7.06501 7.17053 7.37644 7.83382 7.92867 8.30009 8.74855 9.30811 10.82606 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.006494 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.388226 B = 4310.408307 C = 5365.649502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.280 6.280 3 C 0.236 3.764 4 C -0.242 4.242 5 C 0.060 3.940 6 C -0.719 4.719 7 S 2.686 3.314 8 O -0.976 6.976 9 O -0.962 6.962 10 N -1.092 6.092 11 C 0.243 3.757 12 H 0.036 0.964 13 C -0.158 4.158 14 C -0.518 4.518 15 H 0.084 0.916 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.853 3.147 19 H -0.271 1.271 20 H -0.253 1.253 21 H -0.282 1.282 22 C 0.076 3.924 23 C -0.186 4.186 24 C 0.531 3.469 25 O -0.500 6.500 26 O -0.511 6.511 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.414 0.586 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.268 0.732 37 H 0.160 0.840 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -4.917 -11.804 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.190 6.190 3 C 0.187 3.813 4 C -0.261 4.261 5 C 0.041 3.959 6 C -0.804 4.804 7 S 2.774 3.226 8 O -0.967 6.967 9 O -0.952 6.952 10 N -0.853 5.853 11 C 0.138 3.862 12 H 0.054 0.946 13 C -0.218 4.218 14 C -0.558 4.558 15 H 0.102 0.898 16 C -0.125 4.125 17 N -0.523 5.523 18 Si 0.679 3.321 19 H -0.196 1.196 20 H -0.177 1.177 21 H -0.208 1.208 22 C 0.057 3.943 23 C -0.189 4.189 24 C 0.375 3.625 25 O -0.389 6.389 26 O -0.323 6.323 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.178 0.822 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.142 -4.890 -12.461 14.340 hybrid contribution -0.110 -1.758 0.456 1.820 sum -5.252 -6.648 -12.005 14.693 Atomic orbital electron populations 1.23290 0.77794 1.04761 1.01949 1.86341 1.21753 1.25438 1.85499 1.19185 0.90552 0.85220 0.86391 1.21284 1.00760 0.91575 1.12472 1.20923 0.92326 0.98364 0.84317 1.31125 1.04970 1.22506 1.21783 1.02136 0.73729 0.73086 0.73642 1.93529 1.64217 1.61012 1.77898 1.93566 1.38027 1.86101 1.77473 1.55742 1.58936 1.41311 1.29347 1.18900 0.86644 0.89356 0.91301 0.94602 1.22383 0.98097 1.01369 0.99944 1.21071 1.36710 1.03153 0.94912 0.89827 1.24946 0.94691 0.98037 0.94777 1.69863 1.45003 1.29945 1.07459 0.87209 0.81471 0.83655 0.79764 1.19612 1.17745 1.20764 1.21156 1.00871 0.89244 0.83040 1.18396 0.89742 0.92227 1.18510 1.20388 0.80689 0.88757 0.72633 1.90909 1.72811 1.29393 1.45817 1.84587 1.19726 1.41960 1.86048 0.91789 0.92017 0.87584 0.83473 0.83085 0.75089 0.92876 0.92415 0.94045 0.92222 0.82229 0.72732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.28 -4.05 8.57 -40.49 -0.35 -4.39 16 3 C 0.24 3.62 6.70 -38.67 -0.26 3.36 16 4 C -0.24 -3.15 9.03 -39.48 -0.36 -3.50 16 5 C 0.06 0.85 9.50 -39.53 -0.38 0.48 16 6 C -0.72 -11.89 5.81 -39.63 -0.23 -12.12 16 7 S 2.69 46.81 5.65 -107.50 -0.61 46.21 16 8 O -0.98 -17.53 17.26 -57.17 -0.99 -18.52 16 9 O -0.96 -18.54 16.61 -57.17 -0.95 -19.49 16 10 N -1.09 -20.15 5.46 -5.89 -0.03 -20.18 16 11 C 0.24 5.25 2.35 -69.09 -0.16 5.09 16 12 H 0.04 0.79 4.60 -51.93 -0.24 0.55 16 13 C -0.16 -3.21 9.45 37.15 0.35 -2.85 16 14 C -0.52 -13.14 9.11 -34.44 -0.31 -13.45 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 18 Si 0.85 20.07 26.63 -169.99 -4.53 15.54 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.25 -5.59 6.84 56.52 0.39 -5.21 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.08 1.31 8.46 -39.18 -0.33 0.97 16 23 C -0.19 -3.17 5.88 -104.86 -0.62 -3.79 16 24 C 0.53 8.89 8.26 34.46 0.28 9.17 16 25 O -0.50 -9.13 15.95 -26.59 -0.42 -9.56 16 26 O -0.51 -7.04 12.68 -40.65 -0.52 -7.55 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.15 1.35 6.30 -52.48 -0.33 1.02 16 31 H 0.15 1.78 7.60 -52.48 -0.40 1.38 16 32 H 0.41 6.90 8.83 -34.47 -0.30 6.59 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.18 7.78 -51.93 -0.40 0.77 16 35 H 0.04 0.78 7.74 -51.93 -0.40 0.38 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.16 2.65 7.15 -52.49 -0.38 2.27 16 38 H 0.41 3.48 9.11 45.56 0.42 3.90 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -34.69 340.75 -6.85 -41.54 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.25 Total: 9.23 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.12 Total: -13.46 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.74 Total: -44.68 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -3.22 Total: -59.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.53 Total: 15.54 kcal Atomic # 16 Polarization: 46.81 SS G_CDS: -0.61 Total: 46.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.69 -6.85 -41.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.716 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds