Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35637 * 116.99947 * 2 1 4 4 C 1.38715 * 120.15425 * 0.02562 * 3 2 1 5 5 C 1.38056 * 120.08672 * 179.97438 * 4 3 2 6 6 C 1.38568 * 120.40316 * 0.29977 * 5 4 3 7 7 S 1.76199 * 119.84578 * 179.70351 * 6 5 4 8 8 O 1.42100 * 106.40137 * 203.53873 * 7 6 5 9 9 O 1.42112 * 106.39737 * 336.45618 * 7 6 5 10 10 N 1.65591 * 107.22052 * 89.99541 * 7 6 5 11 11 C 1.46503 * 119.99795 * 65.00213 * 10 7 6 12 12 H 1.08998 * 109.47131 * 24.99835 * 11 10 7 13 13 C 1.53006 * 109.47177 * 264.99702 * 11 10 7 14 14 C 1.50706 * 109.46890 * 145.00343 * 11 10 7 15 15 H 1.07995 * 120.00145 * 34.99550 * 14 11 10 16 16 C 1.37877 * 119.99464 * 215.00376 * 14 11 10 17 17 N 1.31515 * 119.99853 * 184.91588 * 16 14 11 18 18 Si 1.86804 * 120.00340 * 4.90922 * 16 14 11 19 19 H 1.48499 * 109.46897 * 84.83708 * 18 16 14 20 20 H 1.48496 * 109.47147 * 204.84253 * 18 16 14 21 21 H 1.48503 * 109.46843 * 324.83875 * 18 16 14 22 22 C 1.37768 * 120.30638 * 359.44073 * 6 5 4 23 23 C 1.39768 * 119.90139 * 0.53117 * 22 6 5 24 24 C 1.47404 * 120.19554 * 179.72019 * 23 22 6 25 25 O 1.21503 * 120.00104 * 180.02562 * 24 23 22 26 26 O 1.34753 * 119.99647 * 0.02621 * 24 23 22 27 27 H 1.08999 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47416 * 300.00179 * 1 2 3 29 29 H 1.09006 * 109.47402 * 59.99372 * 1 2 3 30 30 H 1.07999 * 119.95558 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.79643 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00163 * 244.99920 * 10 7 6 33 33 H 1.08999 * 109.47062 * 295.02406 * 13 11 10 34 34 H 1.08999 * 109.46726 * 55.01620 * 13 11 10 35 35 H 1.08994 * 109.46818 * 175.01740 * 13 11 10 36 36 H 0.96994 * 119.99929 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.04548 * 180.25748 * 22 6 5 38 38 H 0.96704 * 116.99428 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3039 3.6839 -0.0052 7 16 4.0903 5.2607 -0.0123 8 8 5.3854 5.0606 -0.5619 9 8 3.1486 6.1762 -0.5549 10 7 4.3160 5.7031 1.5674 11 6 5.2169 4.9277 2.4237 12 1 5.9560 4.4176 1.8059 13 6 4.4086 3.8937 3.2103 14 6 5.9178 5.8536 3.3842 15 1 5.3989 6.7137 3.7810 16 6 7.2215 5.6028 3.7562 17 7 7.8015 6.3537 4.6669 18 14 8.1641 4.1964 2.9667 19 1 8.7638 4.6582 1.6890 20 1 9.2407 3.7453 3.8845 21 1 7.2368 3.0679 2.6989 22 6 4.0672 2.5370 -0.0004 23 6 3.4446 1.2857 -0.0004 24 6 4.2549 0.0544 -0.0015 25 8 3.7100 -1.0316 -0.0020 26 8 5.6002 0.1332 -0.0020 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.2138 2.3195 0.0014 31 1 1.3303 4.5076 0.0019 32 1 3.8517 6.4758 1.9257 33 1 3.7306 4.4055 3.8932 34 1 3.8322 3.2801 2.5180 35 1 5.0873 3.2589 3.7798 36 1 8.7185 6.1770 4.9289 37 1 5.1451 2.6048 -0.0011 38 1 6.0888 -0.7013 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = -171.906044 kcal Electronic energy + Delta-G solvation = -26848.690771 eV Core-core repulsion = 22784.035173 eV Total energy + Delta-G solvation = -4064.655598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97118 -39.56153 -37.77769 -36.85925 -36.05402 -35.63971 -35.42328 -32.26805 -31.91903 -30.76382 -29.10527 -27.83154 -25.36371 -24.94989 -22.88809 -21.89311 -20.84492 -19.22649 -18.65605 -18.14642 -17.90208 -17.30747 -16.55796 -16.34620 -16.20909 -16.06603 -15.47968 -15.47047 -14.86898 -14.58079 -14.08404 -13.62175 -13.50686 -13.23372 -13.15585 -12.86755 -12.57232 -12.42517 -12.07109 -11.87362 -11.76134 -11.67546 -11.58219 -11.55765 -11.54324 -11.08328 -10.94455 -10.76745 -10.58231 -10.49732 -9.86855 -9.48243 -9.36858 -8.97216 -8.72760 -8.56324 -6.25178 -4.26671 0.38774 0.69656 0.90668 2.30865 2.74298 2.88186 3.22156 3.27307 3.31467 3.37641 3.62305 4.14466 4.25943 4.30045 4.41532 4.66452 4.76660 4.77861 4.91646 5.09492 5.12023 5.12954 5.24189 5.39777 5.54965 5.76795 5.84589 5.94796 6.19779 6.23921 6.36334 6.40067 6.50677 6.84880 7.03259 7.08458 7.41117 7.84383 7.84508 8.33043 8.77998 9.34754 10.86413 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.005076 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.805327 B = 5515.264567 C = 6565.032645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.280 6.280 3 C 0.234 3.766 4 C -0.244 4.244 5 C 0.057 3.943 6 C -0.720 4.720 7 S 2.680 3.320 8 O -0.958 6.958 9 O -0.976 6.976 10 N -1.090 6.090 11 C 0.235 3.765 12 H 0.049 0.951 13 C -0.159 4.159 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.885 5.885 18 Si 0.864 3.136 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.260 1.260 22 C 0.080 3.920 23 C -0.186 4.186 24 C 0.531 3.469 25 O -0.501 6.501 26 O -0.510 6.510 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.269 0.731 37 H 0.161 0.839 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -11.321 -8.736 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.190 6.190 3 C 0.185 3.815 4 C -0.263 4.263 5 C 0.038 3.962 6 C -0.805 4.805 7 S 2.768 3.232 8 O -0.948 6.948 9 O -0.966 6.966 10 N -0.852 5.852 11 C 0.130 3.870 12 H 0.067 0.933 13 C -0.219 4.219 14 C -0.555 4.555 15 H 0.101 0.899 16 C -0.126 4.126 17 N -0.521 5.521 18 Si 0.690 3.310 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.184 1.184 22 C 0.061 3.939 23 C -0.189 4.189 24 C 0.375 3.625 25 O -0.390 6.390 26 O -0.322 6.322 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.249 0.751 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.179 0.821 38 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -13.068 -11.157 -9.471 19.621 hybrid contribution 0.114 -1.484 0.226 1.505 sum -12.954 -12.641 -9.245 20.324 Atomic orbital electron populations 1.23285 0.77791 1.04782 1.01893 1.86351 1.21725 1.25445 1.85510 1.19194 0.90568 0.85167 0.86558 1.21291 1.00716 0.91592 1.12687 1.20938 0.92343 0.98315 0.84638 1.31274 1.04886 1.22848 1.21452 1.02407 0.73747 0.73084 0.73943 1.93583 1.38073 1.85952 1.77166 1.93527 1.64130 1.60992 1.78000 1.55807 1.58790 1.40815 1.29752 1.19028 0.87574 0.90544 0.89846 0.93279 1.22458 1.00330 0.98834 1.00286 1.20976 0.97925 1.11771 1.24799 0.89909 1.24992 0.97099 0.96094 0.94376 1.69871 1.13702 1.38898 1.29649 0.87046 0.80462 0.83227 0.80255 1.18940 1.21015 1.18445 1.21185 1.01034 0.89087 0.82621 1.18406 0.89637 0.92221 1.18617 1.20386 0.80743 0.88684 0.72694 1.90917 1.72861 1.29430 1.45839 1.84604 1.19622 1.42024 1.85919 0.87571 0.91897 0.92011 0.83582 0.83170 0.75125 0.92503 0.95612 0.92459 0.92142 0.82120 0.72629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.28 -3.44 8.57 -40.49 -0.35 -3.79 16 3 C 0.23 3.03 6.70 -38.67 -0.26 2.77 16 4 C -0.24 -2.62 9.03 -39.47 -0.36 -2.98 16 5 C 0.06 0.69 9.50 -39.53 -0.38 0.31 16 6 C -0.72 -10.71 4.95 -39.63 -0.20 -10.90 16 7 S 2.68 46.86 5.71 -107.50 -0.61 46.24 16 8 O -0.96 -19.79 16.61 -57.17 -0.95 -20.73 16 9 O -0.98 -17.60 17.27 -57.17 -0.99 -18.58 16 10 N -1.09 -20.13 5.46 -5.88 -0.03 -20.17 16 11 C 0.23 5.06 2.56 -69.07 -0.18 4.88 16 12 H 0.05 1.11 4.65 -51.93 -0.24 0.86 16 13 C -0.16 -3.03 9.50 37.16 0.35 -2.67 16 14 C -0.51 -13.27 9.11 -34.44 -0.31 -13.59 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 18 Si 0.86 20.47 26.99 -169.99 -4.59 15.88 16 19 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.26 -5.71 6.82 56.52 0.39 -5.32 16 22 C 0.08 1.22 8.23 -39.18 -0.32 0.90 16 23 C -0.19 -2.72 5.88 -104.86 -0.62 -3.33 16 24 C 0.53 7.73 8.26 34.46 0.28 8.01 16 25 O -0.50 -8.16 15.95 -26.59 -0.42 -8.58 16 26 O -0.51 -6.21 12.68 -40.64 -0.52 -6.72 16 27 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 30 H 0.15 1.05 6.30 -52.49 -0.33 0.72 16 31 H 0.15 1.50 7.60 -52.49 -0.40 1.11 16 32 H 0.41 6.91 8.83 -34.47 -0.30 6.61 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.42 6.15 -51.93 -0.32 0.10 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.16 2.49 7.16 -52.48 -0.38 2.11 16 38 H 0.41 2.95 9.11 45.56 0.42 3.36 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -35.12 339.14 -6.85 -41.97 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.19 Total: 7.48 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.09 Total: -13.42 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.74 Total: -44.85 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -3.22 Total: -58.41 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.59 Total: 15.88 kcal Atomic # 16 Polarization: 46.86 SS G_CDS: -0.61 Total: 46.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.12 -6.85 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.938 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds