Wall clock time and date at job start Tue Mar 31 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99637 * 2 1 4 4 C 1.53005 * 109.46993 * 66.04892 * 3 2 1 5 5 C 1.50701 * 109.46950 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00231 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99677 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99745 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99951 * 9 7 5 11 11 H 1.48497 * 109.47415 * 210.00170 * 9 7 5 12 12 H 1.48502 * 109.47011 * 330.00532 * 9 7 5 13 13 C 1.46898 * 111.00099 * 236.05166 * 2 1 3 14 14 H 1.08996 * 110.27237 * 171.71574 * 13 2 1 15 15 C 1.51375 * 110.30616 * 49.53440 * 13 2 1 16 16 C 1.38491 * 130.36994 * 78.24054 * 15 13 2 17 17 C 1.38226 * 120.23009 * 180.02562 * 16 15 13 18 18 Cl 1.73605 * 120.03785 * 180.02562 * 17 16 15 19 19 C 1.38346 * 119.92674 * 0.02562 * 17 16 15 20 20 C 1.38203 * 119.90472 * 359.97438 * 19 17 16 21 21 Cl 1.73593 * 119.89802 * 180.02562 * 20 19 17 22 22 C 1.38211 * 109.75836 * 258.26831 * 15 13 2 23 23 C 1.51365 * 109.76005 * 359.97438 * 22 15 13 24 24 C 1.54343 * 110.30469 * 293.78983 * 13 2 1 25 25 H 1.09001 * 110.82675 * 210.80477 * 24 13 2 26 26 O 1.42912 * 110.82061 * 334.35441 * 24 13 2 27 27 H 1.08998 * 109.47482 * 66.75415 * 1 2 3 28 28 H 1.09004 * 109.47060 * 186.75498 * 1 2 3 29 29 H 1.09001 * 109.47190 * 306.75202 * 1 2 3 30 30 H 1.09000 * 109.46850 * 186.04844 * 3 2 1 31 31 H 1.08998 * 109.47507 * 306.04923 * 3 2 1 32 32 H 1.08996 * 109.46815 * 299.99629 * 4 3 2 33 33 H 1.08998 * 109.46969 * 59.99702 * 4 3 2 34 34 H 0.97006 * 119.99497 * 179.97438 * 8 7 5 35 35 H 1.07994 * 119.88192 * 0.02778 * 16 15 13 36 36 H 1.07996 * 120.05260 * 180.02562 * 19 17 16 37 37 H 1.09010 * 110.30245 * 223.89209 * 23 22 15 38 38 H 1.08997 * 110.38791 * 101.77925 * 23 22 15 39 39 H 0.96700 * 114.00035 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1718 3.4642 1.3186 6 1 2.7198 3.8323 0.4638 7 6 1.9668 4.2812 2.4101 8 7 2.4390 5.5087 2.4105 9 14 1.0185 3.6447 3.8883 10 1 1.9614 3.0165 4.8483 11 1 0.3173 4.7740 4.5503 12 1 0.0230 2.6375 3.4414 13 6 1.9954 -0.7659 -1.1376 14 1 3.0753 -0.6380 -1.2116 15 6 1.3235 -0.3282 -2.4215 16 6 1.5416 0.7872 -3.2130 17 6 0.7952 0.9835 -4.3598 18 17 1.0731 2.3830 -5.3486 19 6 -0.1737 0.0634 -4.7186 20 6 -0.3923 -1.0501 -3.9297 21 17 -1.6076 -2.2048 -4.3804 22 6 0.3561 -1.2479 -2.7797 23 6 0.3120 -2.3670 -1.7614 24 6 1.6422 -2.2607 -0.9863 25 1 2.4077 -2.8879 -1.4432 26 8 1.4578 -2.6024 0.3890 27 1 -0.3634 0.4056 -0.9442 28 1 -0.3633 -1.0206 0.1209 29 1 -0.3633 0.6149 0.8234 30 1 3.0796 1.3445 -0.1083 31 1 1.5609 1.9274 -0.8308 32 1 0.5471 2.0844 1.4265 33 1 2.0657 1.5015 2.1492 34 1 2.2944 6.0836 3.1784 35 1 2.2974 1.5060 -2.9333 36 1 -0.7578 0.2145 -5.6143 37 1 0.2422 -3.3323 -2.2631 38 1 -0.5314 -2.2314 -1.0845 39 1 1.2345 -3.5316 0.5369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052638601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:34 Heat of formation + Delta-G solvation = -22.697110 kcal Electronic energy + Delta-G solvation = -24009.807139 eV Core-core repulsion = 20390.287184 eV Total energy + Delta-G solvation = -3619.519955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12789 -38.09313 -36.96952 -36.37345 -36.09179 -33.84508 -32.68500 -31.25582 -29.90751 -28.34053 -27.72828 -25.66191 -23.15766 -22.90279 -21.60242 -20.35835 -19.72462 -17.75295 -17.06569 -16.79184 -16.46730 -15.83515 -15.12176 -14.71858 -14.55519 -14.38158 -14.24966 -13.73239 -13.64690 -13.20000 -13.06798 -12.77805 -12.51149 -12.47013 -12.38327 -11.91120 -11.63915 -11.49123 -11.33572 -11.20306 -11.12041 -11.02866 -10.90893 -10.70720 -10.11270 -10.09573 -9.72727 -9.69420 -9.18378 -9.03442 -8.74206 -8.49840 -7.86688 -6.01938 -3.99812 0.73645 0.80206 1.59835 2.06298 3.13637 3.35463 3.42115 3.47563 3.82065 4.03024 4.34933 4.42524 4.49054 4.61962 4.79125 4.88150 4.97816 5.02431 5.27526 5.32863 5.40009 5.46701 5.55963 5.67175 5.68016 5.78045 5.85554 5.94839 6.08585 6.17198 6.28608 6.32863 6.42188 6.76860 7.14036 7.31254 7.52115 7.60424 7.70155 7.86683 8.55053 9.01893 9.60887 11.11381 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.004157 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.859860 B = 6733.534286 C = 8243.557490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.503 5.503 3 C 0.064 3.936 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.128 3.872 14 H 0.100 0.900 15 C -0.095 4.095 16 C -0.078 4.078 17 C -0.024 4.024 18 Cl -0.054 7.054 19 C -0.102 4.102 20 C -0.015 4.015 21 Cl -0.064 7.064 22 C -0.073 4.073 23 C -0.120 4.120 24 C 0.116 3.884 25 H 0.074 0.926 26 O -0.526 6.526 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -18.622 -14.923 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.224 5.224 3 C -0.062 4.062 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.708 3.292 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 C 0.018 3.982 14 H 0.118 0.882 15 C -0.098 4.098 16 C -0.098 4.098 17 C -0.051 4.051 18 Cl -0.025 7.025 19 C -0.122 4.122 20 C -0.042 4.042 21 Cl -0.036 7.036 22 C -0.075 4.075 23 C -0.157 4.157 24 C 0.055 3.945 25 H 0.092 0.908 26 O -0.329 6.329 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.021 -18.017 -14.386 23.596 hybrid contribution -1.071 -0.151 -0.367 1.143 sum -6.092 -18.168 -14.753 24.184 Atomic orbital electron populations 1.22573 0.87923 1.01931 1.00399 1.62325 1.07897 1.15489 1.36661 1.22265 0.99025 0.85173 0.99761 1.19558 0.96539 0.95527 0.92707 1.21068 1.35489 0.95541 1.03747 0.91167 1.24978 0.95279 0.94667 0.98362 1.69921 1.46325 1.07211 1.30868 0.86762 0.80823 0.78507 0.83106 1.20200 1.21562 1.18990 1.21325 0.99650 0.92420 0.84783 0.88206 1.21235 0.97596 0.93998 0.96973 1.20746 0.99526 0.97420 0.92081 1.20557 0.98852 0.91011 0.94666 1.98396 1.95602 1.39601 1.68913 1.20757 0.98311 0.92459 1.00645 1.20240 0.94733 0.93151 0.96051 1.98369 1.54142 1.58716 1.92328 1.20291 0.95440 0.97835 0.93908 1.22070 1.00884 0.96462 0.96276 1.22324 0.94221 0.95009 0.82900 0.90794 1.86818 1.92777 1.30792 1.22464 0.96305 0.91275 0.90839 0.91493 0.95371 0.96625 0.96022 0.92772 0.83947 0.83789 0.90041 0.88031 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.00 60.06 0.48 0.80 16 2 N -0.50 -8.47 4.12 -235.03 -0.97 -9.44 16 3 C 0.06 1.28 4.58 -3.82 -0.02 1.27 16 4 C -0.01 -0.14 3.98 -27.88 -0.11 -0.25 16 5 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 6 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 C 0.13 1.71 3.02 -67.83 -0.20 1.50 16 14 H 0.10 1.30 7.92 -51.93 -0.41 0.89 16 15 C -0.10 -1.21 3.89 -104.21 -0.41 -1.62 16 16 C -0.08 -1.03 8.84 -39.49 -0.35 -1.38 16 17 C -0.02 -0.29 6.32 -39.55 -0.25 -0.54 16 18 Cl -0.05 -0.64 28.96 -51.86 -1.50 -2.14 16 19 C -0.10 -1.13 9.61 -39.55 -0.38 -1.51 16 20 C -0.01 -0.16 6.32 -39.45 -0.25 -0.41 16 21 Cl -0.06 -0.63 28.71 -51.86 -1.49 -2.12 16 22 C -0.07 -0.83 5.23 -104.16 -0.55 -1.38 16 23 C -0.12 -1.14 5.44 -26.86 -0.15 -1.29 16 24 C 0.12 1.19 4.12 -25.33 -0.10 1.09 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 O -0.53 -5.85 11.75 -35.23 -0.41 -6.26 16 27 H 0.02 0.30 6.37 -51.93 -0.33 -0.03 16 28 H 0.07 0.98 4.73 -51.93 -0.25 0.73 16 29 H 0.07 1.33 6.19 -51.93 -0.32 1.01 16 30 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 31 H 0.03 0.57 6.80 -51.93 -0.35 0.21 16 32 H 0.02 0.38 5.48 -51.93 -0.28 0.10 16 33 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.14 1.91 7.78 -52.49 -0.41 1.50 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.10 1.02 6.08 -51.93 -0.32 0.71 16 39 H 0.37 2.28 9.12 45.56 0.42 2.70 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -32.02 336.82 -9.82 -41.84 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.91 Total: -0.14 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.71 Total: -17.02 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.19 Total: -36.74 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.41 Total: -6.26 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.99 Total: -4.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.02 -9.82 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052638601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.146 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds