Wall clock time and date at job start Tue Mar 31 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99637 * 2 1 4 4 C 1.53005 * 109.46993 * 66.04892 * 3 2 1 5 5 C 1.50701 * 109.46950 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00231 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99677 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99745 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99951 * 9 7 5 11 11 H 1.48497 * 109.47415 * 210.00170 * 9 7 5 12 12 H 1.48502 * 109.47011 * 330.00532 * 9 7 5 13 13 C 1.46898 * 111.00099 * 236.05166 * 2 1 3 14 14 H 1.08996 * 110.27237 * 171.71574 * 13 2 1 15 15 C 1.51375 * 110.30616 * 49.53440 * 13 2 1 16 16 C 1.38491 * 130.36994 * 78.24054 * 15 13 2 17 17 C 1.38226 * 120.23009 * 180.02562 * 16 15 13 18 18 Cl 1.73605 * 120.03785 * 180.02562 * 17 16 15 19 19 C 1.38346 * 119.92674 * 0.02562 * 17 16 15 20 20 C 1.38203 * 119.90472 * 359.97438 * 19 17 16 21 21 Cl 1.73593 * 119.89802 * 180.02562 * 20 19 17 22 22 C 1.38211 * 109.75836 * 258.26831 * 15 13 2 23 23 C 1.51365 * 109.76005 * 359.97438 * 22 15 13 24 24 C 1.54343 * 110.30469 * 293.78983 * 13 2 1 25 25 H 1.09001 * 110.82675 * 210.80477 * 24 13 2 26 26 O 1.42912 * 110.82061 * 334.35441 * 24 13 2 27 27 H 1.08998 * 109.47482 * 66.75415 * 1 2 3 28 28 H 1.09004 * 109.47060 * 186.75498 * 1 2 3 29 29 H 1.09001 * 109.47190 * 306.75202 * 1 2 3 30 30 H 1.09000 * 109.46850 * 186.04844 * 3 2 1 31 31 H 1.08998 * 109.47507 * 306.04923 * 3 2 1 32 32 H 1.08996 * 109.46815 * 299.99629 * 4 3 2 33 33 H 1.08998 * 109.46969 * 59.99702 * 4 3 2 34 34 H 0.97006 * 119.99497 * 179.97438 * 8 7 5 35 35 H 1.07994 * 119.88192 * 0.02778 * 16 15 13 36 36 H 1.07996 * 120.05260 * 180.02562 * 19 17 16 37 37 H 1.09010 * 110.30245 * 223.89209 * 23 22 15 38 38 H 1.08997 * 110.38791 * 101.77925 * 23 22 15 39 39 H 0.96700 * 114.00035 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1718 3.4642 1.3186 6 1 2.7198 3.8323 0.4638 7 6 1.9668 4.2812 2.4101 8 7 2.4390 5.5087 2.4105 9 14 1.0185 3.6447 3.8883 10 1 1.9614 3.0165 4.8483 11 1 0.3173 4.7740 4.5503 12 1 0.0230 2.6375 3.4414 13 6 1.9954 -0.7659 -1.1376 14 1 3.0753 -0.6380 -1.2116 15 6 1.3235 -0.3282 -2.4215 16 6 1.5416 0.7872 -3.2130 17 6 0.7952 0.9835 -4.3598 18 17 1.0731 2.3830 -5.3486 19 6 -0.1737 0.0634 -4.7186 20 6 -0.3923 -1.0501 -3.9297 21 17 -1.6076 -2.2048 -4.3804 22 6 0.3561 -1.2479 -2.7797 23 6 0.3120 -2.3670 -1.7614 24 6 1.6422 -2.2607 -0.9863 25 1 2.4077 -2.8879 -1.4432 26 8 1.4578 -2.6024 0.3890 27 1 -0.3634 0.4056 -0.9442 28 1 -0.3633 -1.0206 0.1209 29 1 -0.3633 0.6149 0.8234 30 1 3.0796 1.3445 -0.1083 31 1 1.5609 1.9274 -0.8308 32 1 0.5471 2.0844 1.4265 33 1 2.0657 1.5015 2.1492 34 1 2.2944 6.0836 3.1784 35 1 2.2974 1.5060 -2.9333 36 1 -0.7578 0.2145 -5.6143 37 1 0.2422 -3.3323 -2.2631 38 1 -0.5314 -2.2314 -1.0845 39 1 1.2345 -3.5316 0.5369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052638601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:33 Heat of formation + Delta-G solvation = -43.956808 kcal Electronic energy + Delta-G solvation = -24010.729029 eV Core-core repulsion = 20390.287184 eV Total energy + Delta-G solvation = -3620.441845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08213 -39.06385 -37.84857 -37.30929 -37.22376 -35.23043 -34.36667 -32.37549 -31.58703 -29.26815 -28.77621 -27.28550 -24.72510 -23.79065 -22.62068 -21.65223 -21.11419 -19.13780 -18.39566 -17.98338 -17.44161 -16.78420 -16.46882 -16.01819 -15.91642 -15.70041 -15.31785 -14.92511 -14.80502 -14.56795 -14.48928 -14.02955 -13.70216 -13.56040 -13.31716 -13.25732 -12.95537 -12.72892 -12.59204 -12.53928 -12.16933 -12.12658 -12.00257 -11.94510 -11.91267 -11.66581 -11.35552 -11.19783 -10.86718 -10.75151 -9.98140 -9.64220 -9.20910 -8.29677 -6.33278 -0.17677 -0.12203 0.71387 1.17307 1.36550 1.37117 1.50075 2.20434 2.36461 2.89052 3.06146 3.10293 3.31477 3.57294 3.75077 3.87161 4.01596 4.13029 4.19465 4.26309 4.34751 4.45905 4.57711 4.60639 4.65843 4.69487 4.74035 4.83137 4.91505 4.97812 5.00313 5.16029 5.22099 5.29216 5.38021 5.48459 5.62847 6.11134 6.18476 6.31213 6.73969 7.12111 7.31434 8.86966 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.004157 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.859860 B = 6733.534286 C = 8243.557490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.507 5.507 3 C 0.079 3.921 4 C 0.002 3.998 5 C -0.530 4.530 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.251 1.251 13 C 0.118 3.882 14 H 0.096 0.904 15 C -0.107 4.107 16 C -0.094 4.094 17 C -0.032 4.032 18 Cl -0.057 7.057 19 C -0.098 4.098 20 C -0.018 4.018 21 Cl -0.047 7.047 22 C -0.069 4.069 23 C -0.113 4.113 24 C 0.126 3.874 25 H 0.101 0.899 26 O -0.549 6.549 27 H 0.015 0.985 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -21.713 -14.917 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.229 5.229 3 C -0.049 4.049 4 C -0.036 4.036 5 C -0.569 4.569 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.175 1.175 13 C 0.009 3.991 14 H 0.114 0.886 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.059 4.059 18 Cl -0.028 7.028 19 C -0.117 4.117 20 C -0.045 4.045 21 Cl -0.018 7.018 22 C -0.071 4.071 23 C -0.150 4.150 24 C 0.066 3.934 25 H 0.119 0.881 26 O -0.355 6.355 27 H 0.034 0.966 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.179 0.821 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.565 -21.149 -14.398 26.413 hybrid contribution -0.561 0.803 -0.480 1.090 sum -7.125 -20.346 -14.877 26.193 Atomic orbital electron populations 1.22535 0.87447 1.02937 0.99239 1.62238 1.08304 1.13167 1.39150 1.21905 0.98767 0.87161 0.97058 1.19415 0.96034 0.93226 0.94895 1.21392 1.34996 0.97871 1.02594 0.94881 1.25923 0.96369 0.94749 1.01758 1.70065 1.48069 1.08759 1.32157 0.85670 0.79707 0.78327 0.79014 1.19112 1.20886 1.17462 1.21508 0.99506 0.94187 0.83869 0.88558 1.21136 0.98465 0.94393 0.96970 1.20756 0.99878 0.97727 0.92995 1.20603 0.99357 0.91392 0.94578 1.98391 1.95676 1.39853 1.68862 1.20972 0.97682 0.91980 1.01087 1.20312 0.94942 0.93378 0.95857 1.98377 1.53329 1.57950 1.92173 1.20508 0.94514 0.97902 0.94144 1.22076 1.00302 0.96932 0.95655 1.22300 0.95316 0.92726 0.83086 0.88108 1.86751 1.92966 1.33111 1.22715 0.96646 0.88766 0.93076 0.92007 0.96340 0.96603 0.96293 0.92478 0.85429 0.82055 0.87333 0.88114 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.00 127.69 1.02 1.83 16 2 N -0.51 -16.69 4.12 -897.50 -3.70 -20.39 16 3 C 0.08 3.20 4.58 86.30 0.39 3.60 16 4 C 0.00 0.10 3.98 29.85 0.12 0.22 16 5 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 6 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 9 Si 0.95 45.75 27.47 68.60 1.88 47.64 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 13 C 0.12 3.01 3.02 44.84 0.14 3.15 16 14 H 0.10 2.46 7.92 -2.39 -0.02 2.45 16 15 C -0.11 -2.63 3.89 -19.60 -0.08 -2.70 16 16 C -0.09 -2.49 8.84 22.33 0.20 -2.30 16 17 C -0.03 -0.78 6.32 22.29 0.14 -0.64 16 18 Cl -0.06 -1.35 28.96 -2.72 -0.08 -1.43 16 19 C -0.10 -2.01 9.61 22.29 0.21 -1.79 16 20 C -0.02 -0.35 6.32 22.35 0.14 -0.21 16 21 Cl -0.05 -0.78 28.71 -2.72 -0.08 -0.86 16 22 C -0.07 -1.41 5.23 -19.57 -0.10 -1.51 16 23 C -0.11 -1.75 5.44 30.51 0.17 -1.58 16 24 C 0.13 2.20 4.12 31.50 0.13 2.33 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 O -0.55 -10.42 11.75 -148.98 -1.75 -12.17 16 27 H 0.02 0.48 6.37 -2.39 -0.02 0.46 16 28 H 0.09 2.43 4.73 -2.38 -0.01 2.41 16 29 H 0.05 1.80 6.19 -2.39 -0.01 1.78 16 30 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 31 H 0.02 0.78 6.80 -2.39 -0.02 0.76 16 32 H 0.02 0.77 5.48 -2.39 -0.01 0.76 16 33 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 34 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 35 H 0.13 3.66 7.78 -2.91 -0.02 3.64 16 36 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 1.64 6.08 -2.39 -0.01 1.63 16 39 H 0.39 3.33 9.12 -74.06 -0.68 2.66 16 Total: -1.00 -70.11 336.82 0.14 -69.97 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.37 Total: 7.17 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.19 Total: -29.69 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.40 Total: -80.64 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.75 Total: -12.17 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.64 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.16 Total: -2.28 kcal Total: -70.11 0.14 -69.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052638601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.011 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds