Wall clock time and date at job start Tue Mar 31 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00478 * 2 1 4 4 C 1.53004 * 109.46889 * 293.95905 * 3 2 1 5 5 C 1.50693 * 109.46985 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00440 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99767 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99757 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.46891 * 89.99960 * 9 7 5 11 11 H 1.48504 * 109.47064 * 209.99993 * 9 7 5 12 12 H 1.48496 * 109.46776 * 330.00033 * 9 7 5 13 13 C 1.46902 * 111.00213 * 123.95692 * 2 1 3 14 14 H 1.09007 * 110.34990 * 189.87235 * 13 2 1 15 15 C 1.51380 * 110.30060 * 311.99478 * 13 2 1 16 16 C 1.38485 * 130.37212 * 281.70862 * 15 13 2 17 17 C 1.38225 * 120.23638 * 180.02562 * 16 15 13 18 18 Cl 1.73595 * 120.04121 * 180.02562 * 17 16 15 19 19 C 1.38349 * 119.91743 * 0.02562 * 17 16 15 20 20 C 1.38199 * 119.90870 * 0.02562 * 19 17 16 21 21 Cl 1.73602 * 119.89830 * 180.02562 * 20 19 17 22 22 C 1.38203 * 109.75419 * 101.73179 * 15 13 2 23 23 C 1.51366 * 109.76355 * 0.02562 * 22 15 13 24 24 C 1.54341 * 110.30608 * 67.74171 * 13 2 1 25 25 H 1.09002 * 110.81979 * 25.65371 * 24 13 2 26 26 O 1.42899 * 110.99564 * 149.12678 * 24 13 2 27 27 H 1.09001 * 109.46480 * 290.26187 * 1 2 3 28 28 H 1.08998 * 109.46724 * 50.26187 * 1 2 3 29 29 H 1.08995 * 109.47098 * 170.26375 * 1 2 3 30 30 H 1.08997 * 109.46859 * 53.95242 * 3 2 1 31 31 H 1.08993 * 109.47544 * 173.95487 * 3 2 1 32 32 H 1.09009 * 109.46790 * 299.99738 * 4 3 2 33 33 H 1.08993 * 109.47368 * 59.99475 * 4 3 2 34 34 H 0.97003 * 120.00139 * 179.97438 * 8 7 5 35 35 H 1.08004 * 119.87905 * 0.02562 * 16 15 13 36 36 H 1.07998 * 120.04572 * 180.02562 * 19 17 16 37 37 H 1.09007 * 110.29929 * 258.26063 * 23 22 15 38 38 H 1.08997 * 110.30485 * 136.11385 * 23 22 15 39 39 H 0.96696 * 114.00287 * 177.17150 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1711 3.4644 -1.3180 6 1 2.7185 3.8327 -0.4631 7 6 1.9658 4.2817 -2.4094 8 7 2.4363 5.5097 -2.4090 9 14 1.0195 3.6445 -3.8886 10 1 -0.4264 3.9333 -3.7130 11 1 1.5127 4.3154 -5.1182 12 1 1.2202 2.1782 -4.0104 13 6 1.9955 -0.7660 1.1375 14 1 3.0714 -0.6168 1.2296 15 6 1.2969 -0.3549 2.4160 16 6 1.4814 0.7564 3.2216 17 6 0.7159 0.9257 4.3600 18 17 0.9509 2.3209 5.3657 19 6 -0.2379 -0.0182 4.6968 20 6 -0.4223 -1.1282 3.8944 21 17 -1.6196 -2.3121 4.3170 22 6 0.3440 -1.2978 2.7517 23 6 0.3372 -2.4075 1.7223 24 6 1.6756 -2.2663 0.9670 25 1 1.5550 -2.5194 -0.0863 26 8 2.6864 -3.0770 1.5695 27 1 -0.3632 0.3559 0.9641 28 1 -0.3633 0.6570 -0.7903 29 1 -0.3633 -1.0128 -0.1738 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1082 32 1 2.0658 1.5014 -2.1492 33 1 0.5473 2.0845 -1.4265 34 1 2.2923 6.0846 -3.1770 35 1 2.2261 1.4934 2.9593 36 1 -0.8374 0.1122 5.5855 37 1 -0.4995 -2.2809 1.0352 38 1 0.2804 -3.3789 2.2136 39 1 2.5072 -4.0262 1.5258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052638602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:35 Heat of formation + Delta-G solvation = -27.439015 kcal Electronic energy + Delta-G solvation = -23916.084673 eV Core-core repulsion = 20296.359093 eV Total energy + Delta-G solvation = -3619.725580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14331 -38.05075 -36.95298 -36.56966 -36.22509 -33.79325 -32.67016 -31.24242 -30.00772 -28.38709 -27.78028 -25.76280 -23.21470 -22.95442 -21.59706 -20.37348 -19.85896 -17.77782 -17.06738 -16.78287 -16.37788 -15.80099 -15.27897 -14.87851 -14.71964 -14.38555 -14.19979 -13.90092 -13.70938 -13.36366 -13.19070 -12.62314 -12.61222 -12.47864 -12.33324 -12.03769 -11.61471 -11.50334 -11.31485 -11.25687 -11.11783 -11.02582 -10.94205 -10.82081 -10.29480 -10.00195 -9.95105 -9.78448 -9.24948 -9.00873 -8.71657 -8.54667 -8.10321 -6.06095 -4.04607 0.78234 0.84800 1.62665 2.09167 3.17737 3.30040 3.38036 3.42763 3.69062 4.00836 4.18966 4.44230 4.61255 4.64785 4.78770 4.82295 5.05578 5.13081 5.23944 5.27994 5.39777 5.45927 5.53776 5.61283 5.66614 5.76104 5.80161 5.89634 6.04305 6.15925 6.21620 6.26394 6.32429 6.67443 7.02071 7.16212 7.42625 7.46618 7.51173 7.79349 8.50136 8.97718 9.55998 11.07183 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.004000 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.235550 B = 6998.396234 C = 8224.218592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.520 5.520 3 C 0.067 3.933 4 C -0.006 4.006 5 C -0.522 4.522 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.128 3.872 14 H 0.106 0.894 15 C -0.089 4.089 16 C -0.080 4.080 17 C -0.024 4.024 18 Cl -0.055 7.055 19 C -0.103 4.103 20 C -0.015 4.015 21 Cl -0.066 7.066 22 C -0.071 4.071 23 C -0.117 4.117 24 C 0.113 3.887 25 H 0.090 0.910 26 O -0.557 6.557 27 H 0.028 0.972 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -18.209 13.373 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.243 5.243 3 C -0.059 4.059 4 C -0.044 4.044 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.019 3.981 14 H 0.124 0.876 15 C -0.091 4.091 16 C -0.100 4.100 17 C -0.051 4.051 18 Cl -0.026 7.026 19 C -0.123 4.123 20 C -0.042 4.042 21 Cl -0.037 7.037 22 C -0.073 4.073 23 C -0.154 4.154 24 C 0.053 3.947 25 H 0.108 0.892 26 O -0.362 6.362 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.803 -17.666 13.042 22.713 hybrid contribution -1.259 -0.112 0.136 1.271 sum -7.063 -17.778 13.178 23.229 Atomic orbital electron populations 1.22654 0.87943 1.01853 1.01289 1.62367 1.07963 1.16672 1.37300 1.22249 0.99274 0.84391 0.99961 1.19583 0.96225 0.95823 0.92750 1.21041 1.35774 0.95382 1.03822 0.91078 1.24980 0.95294 0.94636 0.98325 1.69910 1.46210 1.07110 1.30889 0.86793 0.80301 0.79834 0.82506 1.20400 1.21394 1.18718 1.21154 1.00356 0.91891 0.84709 0.87613 1.21171 0.97134 0.93635 0.97182 1.20743 0.99325 0.97716 0.92192 1.20543 0.99030 0.90949 0.94590 1.98392 1.96274 1.40008 1.67940 1.20739 0.98635 0.92334 1.00573 1.20224 0.95000 0.92797 0.96191 1.98365 1.55424 1.56808 1.93083 1.20350 0.95203 0.97618 0.94089 1.22031 1.00060 0.97041 0.96252 1.22324 0.85460 0.90653 0.96227 0.89187 1.86486 1.46651 1.21027 1.82037 0.95327 0.90240 0.91898 0.94961 0.91129 0.95597 0.96992 0.92703 0.84046 0.83840 0.88284 0.89627 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.19 60.06 0.49 0.65 16 2 N -0.52 -8.22 4.69 -235.03 -1.10 -9.32 16 3 C 0.07 1.29 4.61 -3.82 -0.02 1.28 16 4 C -0.01 -0.14 3.99 -27.88 -0.11 -0.25 16 5 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 6 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.13 1.74 2.82 -67.83 -0.19 1.55 16 14 H 0.11 1.53 7.87 -51.92 -0.41 1.13 16 15 C -0.09 -1.18 3.84 -104.21 -0.40 -1.58 16 16 C -0.08 -1.10 8.93 -39.50 -0.35 -1.45 16 17 C -0.02 -0.30 6.32 -39.55 -0.25 -0.55 16 18 Cl -0.06 -0.67 28.96 -51.86 -1.50 -2.17 16 19 C -0.10 -1.19 9.61 -39.55 -0.38 -1.57 16 20 C -0.02 -0.18 6.32 -39.45 -0.25 -0.42 16 21 Cl -0.07 -0.66 28.71 -51.86 -1.49 -2.14 16 22 C -0.07 -0.84 5.19 -104.16 -0.54 -1.38 16 23 C -0.12 -1.13 5.44 -26.86 -0.15 -1.28 16 24 C 0.11 1.21 3.69 -25.33 -0.09 1.12 16 25 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 26 O -0.56 -5.75 13.41 -35.23 -0.47 -6.22 16 27 H 0.03 0.42 6.17 -51.93 -0.32 0.10 16 28 H 0.08 1.28 6.09 -51.93 -0.32 0.96 16 29 H 0.06 0.75 5.62 -51.93 -0.29 0.46 16 30 H 0.03 0.63 6.87 -51.93 -0.36 0.27 16 31 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 32 H 0.03 0.62 7.20 -51.92 -0.37 0.24 16 33 H 0.01 0.28 5.80 -51.93 -0.30 -0.03 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.14 1.96 7.77 -52.48 -0.41 1.56 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.10 0.90 6.19 -51.93 -0.32 0.58 16 38 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.38 2.10 9.12 45.56 0.42 2.52 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -31.02 339.17 -9.96 -40.99 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.94 Total: 0.69 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.67 Total: -16.92 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.33 Total: -36.17 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.47 Total: -6.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -2.99 Total: -4.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.02 -9.96 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052638602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.547 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds