Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46871 * 269.99726 * 3 2 1 5 5 H 1.48494 * 109.46907 * 29.99922 * 3 2 1 6 6 H 1.48498 * 109.46801 * 149.99940 * 3 2 1 7 7 C 1.37875 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47050 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47347 * 180.02562 * 10 9 7 12 12 S 1.65597 * 120.00240 * 165.00292 * 11 10 9 13 13 O 1.42107 * 106.39993 * 311.45942 * 12 11 10 14 14 O 1.42099 * 106.40248 * 178.54251 * 12 11 10 15 15 C 1.76199 * 107.22072 * 64.99824 * 12 11 10 16 16 C 1.38271 * 119.94634 * 270.30507 * 15 12 11 17 17 C 1.38138 * 120.05803 * 180.30266 * 16 15 12 18 18 C 1.38736 * 119.94337 * 359.41293 * 17 16 15 19 19 O 1.35893 * 120.05957 * 180.30421 * 18 17 16 20 20 C 1.42899 * 117.00392 * 180.02562 * 19 18 17 21 21 C 1.50694 * 109.47517 * 180.02562 * 20 19 18 22 22 O 1.20829 * 119.99827 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00540 * 179.97438 * 21 20 19 24 24 C 1.38740 * 119.88595 * 0.28279 * 18 17 16 25 25 C 1.38146 * 119.94197 * 359.97438 * 24 18 17 26 26 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46619 * 60.00012 * 9 7 2 28 28 H 1.08995 * 109.47242 * 299.99913 * 9 7 2 29 29 H 1.09000 * 109.47163 * 59.99869 * 10 9 7 30 30 H 1.09006 * 109.47673 * 300.00313 * 10 9 7 31 31 H 0.96998 * 119.99677 * 344.99954 * 11 10 9 32 32 H 1.08004 * 119.97370 * 0.02562 * 16 15 12 33 33 H 1.08002 * 120.03311 * 179.69762 * 17 16 15 34 34 H 1.09002 * 109.46729 * 299.99846 * 20 19 18 35 35 H 1.09001 * 109.47001 * 59.99870 * 20 19 18 36 36 H 0.96697 * 117.00418 * 179.97438 * 23 21 20 37 37 H 1.07993 * 120.02463 * 180.02562 * 24 18 17 38 38 H 1.08006 * 119.96944 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 16 2.2988 -6.3404 -0.3713 13 8 3.0289 -6.0904 -1.5646 14 8 1.3368 -7.3795 -0.2521 15 6 3.4932 -6.6204 0.8934 16 6 4.7703 -6.1068 0.7626 17 6 5.7104 -6.3303 1.7498 18 6 5.3686 -7.0603 2.8790 19 8 6.2898 -7.2763 3.8544 20 6 5.8680 -8.0369 4.9883 21 6 7.0141 -8.1718 5.9574 22 8 8.0827 -7.6686 5.7029 23 8 6.8479 -8.8509 7.1032 24 6 4.0847 -7.5692 3.0108 25 6 3.1498 -7.3474 2.0182 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8894 31 1 0.5677 -4.9452 0.2170 32 1 5.0345 -5.5343 -0.1143 33 1 6.7092 -5.9331 1.6449 34 1 5.0368 -7.5290 5.4776 35 1 5.5482 -9.0269 4.6631 36 1 7.6119 -8.9107 7.6929 37 1 3.8162 -8.1374 3.8890 38 1 2.1503 -7.7437 2.1201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = -178.025984 kcal Electronic energy + Delta-G solvation = -24890.802862 eV Core-core repulsion = 20825.881883 eV Total energy + Delta-G solvation = -4064.920979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16073 -40.21817 -37.89619 -37.03025 -36.64845 -35.63197 -35.39814 -32.75225 -31.63364 -30.93479 -29.24616 -29.14230 -24.50795 -23.72222 -23.29305 -21.90127 -21.15954 -19.37047 -19.20257 -18.28366 -17.74286 -17.49611 -17.27449 -17.01911 -16.32184 -16.03434 -15.54610 -15.40166 -14.88051 -14.60506 -14.29280 -14.00765 -13.90442 -13.74134 -13.45677 -13.24618 -12.98761 -12.56055 -12.19844 -11.91406 -11.86409 -11.80784 -11.75888 -11.44356 -11.30110 -11.13365 -11.06832 -10.90177 -10.64176 -10.46143 -9.60387 -9.38941 -9.29157 -9.00419 -8.88976 -8.42234 -6.09377 -4.12833 0.51225 0.77405 1.00800 1.53857 1.66282 3.05009 3.08634 3.28859 3.35227 3.37724 3.45262 3.96776 4.16489 4.30385 4.31588 4.40262 4.46807 4.51071 4.66137 4.97298 5.10739 5.25206 5.27618 5.59620 5.65328 5.75358 5.82036 5.84691 5.91103 6.17408 6.27665 6.45651 6.70393 6.77261 7.24412 7.39036 7.54552 7.63644 7.89172 8.26637 8.93090 9.51992 11.02016 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.002897 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.066564 B = 9662.995019 C =11422.706305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.117 3.883 11 N -1.110 6.110 12 S 2.696 3.304 13 O -0.959 6.959 14 O -0.972 6.972 15 C -0.706 4.706 16 C 0.023 3.977 17 C -0.164 4.164 18 C 0.176 3.824 19 O -0.291 6.291 20 C 0.065 3.935 21 C 0.483 3.517 22 O -0.489 6.489 23 O -0.511 6.511 24 C -0.233 4.233 25 C 0.023 3.977 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.417 0.583 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.421 0.579 37 H 0.138 0.862 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -19.064 11.755 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.007 4.007 11 N -0.872 5.872 12 S 2.785 3.215 13 O -0.949 6.949 14 O -0.962 6.962 15 C -0.792 4.792 16 C 0.004 3.996 17 C -0.183 4.183 18 C 0.131 3.869 19 O -0.204 6.204 20 C -0.012 4.012 21 C 0.323 3.677 22 O -0.375 6.375 23 O -0.324 6.324 24 C -0.252 4.252 25 C 0.004 3.996 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.281 0.719 37 H 0.155 0.845 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.847 -19.243 10.688 24.115 hybrid contribution 0.774 0.981 1.403 1.878 sum 10.621 -18.263 12.091 24.342 Atomic orbital electron populations 1.69957 1.06093 1.26879 1.50226 1.25001 0.94877 0.99382 0.95018 0.86537 0.79787 0.83120 0.78228 1.20525 1.21229 1.19765 1.21087 0.93205 0.90498 1.51536 0.92233 1.19282 0.94060 0.90526 0.98227 1.21670 0.96137 0.82552 1.00368 1.55495 1.21437 1.22146 1.88148 1.01749 0.73251 0.72562 0.73984 1.93579 1.73711 1.85095 1.42549 1.93550 1.60041 1.55469 1.87155 1.31073 1.14074 1.14941 1.19073 1.20855 0.90168 0.91609 0.96975 1.20566 1.01823 1.03101 0.92830 1.19201 0.87520 0.92671 0.87539 1.86096 1.37470 1.69022 1.27813 1.21888 0.94248 0.99180 0.85843 1.22558 0.88803 0.75281 0.81051 1.90811 1.27826 1.43712 1.75117 1.84422 1.47460 1.69501 1.31062 1.21319 0.93405 1.07888 1.02603 1.20712 0.99196 0.90080 0.89593 0.92822 0.95539 0.95787 0.92934 0.91249 0.74825 0.83031 0.83874 0.86939 0.87049 0.71885 0.84453 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.43 5.11 -27.89 -0.14 0.28 16 10 C 0.12 2.22 6.16 -4.04 -0.02 2.20 16 11 N -1.11 -17.63 6.00 -10.61 -0.06 -17.70 16 12 S 2.70 40.41 5.73 -107.50 -0.62 39.79 16 13 O -0.96 -16.99 16.75 -57.17 -0.96 -17.95 16 14 O -0.97 -15.84 17.28 -57.17 -0.99 -16.83 16 15 C -0.71 -9.15 5.95 -39.56 -0.24 -9.39 16 16 C 0.02 0.29 9.51 -39.61 -0.38 -0.09 16 17 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 18 C 0.18 1.89 6.69 -39.21 -0.26 1.63 16 19 O -0.29 -2.98 9.67 -39.36 -0.38 -3.36 16 20 C 0.06 0.40 5.33 36.00 0.19 0.60 16 21 C 0.48 3.59 8.40 36.00 0.30 3.89 16 22 O -0.49 -5.73 17.26 -25.48 -0.44 -6.17 16 23 O -0.51 -2.20 13.42 -39.25 -0.53 -2.73 16 24 C -0.23 -2.20 9.04 -39.43 -0.36 -2.55 16 25 C 0.02 0.26 9.51 -39.61 -0.38 -0.12 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.31 7.75 -51.93 -0.40 0.91 16 31 H 0.42 6.10 8.65 -34.47 -0.30 5.80 16 32 H 0.15 1.75 7.62 -52.48 -0.40 1.35 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.11 0.46 7.66 -51.93 -0.40 0.07 16 35 H 0.11 0.41 7.66 -51.93 -0.40 0.01 16 36 H 0.42 0.15 9.10 45.56 0.41 0.56 16 37 H 0.14 0.80 6.30 -52.49 -0.33 0.46 16 38 H 0.15 1.37 7.61 -52.48 -0.40 0.97 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -37.10 351.43 -8.49 -45.59 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.44 Total: 1.86 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.09 Total: -18.64 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.67 Total: -42.79 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -3.29 Total: -47.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 40.41 SS G_CDS: -0.62 Total: 39.79 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.10 -8.49 -45.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.436 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds