Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00199 * 2 1 4 4 C 1.38717 * 120.15289 * 0.02562 * 3 2 1 5 5 C 1.38048 * 120.09045 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.40098 * 359.97438 * 5 4 3 7 7 S 1.76205 * 119.84398 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40326 * 203.53796 * 7 6 5 9 9 O 1.42101 * 106.40084 * 336.45899 * 7 6 5 10 10 N 1.65595 * 107.21838 * 89.99871 * 7 6 5 11 11 C 1.46504 * 120.00149 * 65.00200 * 10 7 6 12 12 C 1.52993 * 109.47354 * 164.99884 * 11 10 7 13 13 C 1.50701 * 109.47313 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00323 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99508 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46873 * 60.00334 * 17 15 13 19 19 H 1.48504 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47478 * 300.00152 * 17 15 13 21 21 C 1.37765 * 120.31277 * 359.76203 * 6 5 4 22 22 C 1.39764 * 119.89756 * 0.51333 * 21 6 5 23 23 C 1.47406 * 120.19600 * 179.74246 * 22 21 6 24 24 O 1.21507 * 120.00179 * 179.45254 * 23 22 21 25 25 O 1.34754 * 120.00035 * 359.72259 * 23 22 21 26 26 H 1.09001 * 109.47267 * 299.99941 * 1 2 3 27 27 H 1.08998 * 109.47177 * 60.00520 * 1 2 3 28 28 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.95195 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.79789 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00358 * 245.00332 * 10 7 6 32 32 H 1.08999 * 109.46649 * 285.00326 * 11 10 7 33 33 H 1.09001 * 109.47044 * 44.99613 * 11 10 7 34 34 H 1.08999 * 109.47603 * 299.99857 * 12 11 10 35 35 H 1.09007 * 109.46900 * 60.00086 * 12 11 10 36 36 H 0.96999 * 119.99333 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.05006 * 180.27819 * 21 6 5 38 38 H 0.96692 * 117.00027 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6839 0.0016 7 16 4.0902 5.2607 0.0030 8 8 5.3879 5.0624 -0.5411 9 8 3.1511 6.1779 -0.5412 10 7 4.3084 5.6983 1.5851 11 6 5.2053 4.9203 2.4433 12 6 5.5225 5.7206 3.7080 13 6 6.4446 4.9200 4.5911 14 1 6.7714 3.9383 4.2814 15 6 6.8703 5.4404 5.7949 16 7 6.4712 6.6352 6.1726 17 14 8.0127 4.4477 6.8898 18 1 9.2724 4.1591 6.1582 19 1 8.3207 5.2246 8.1173 20 1 7.3538 3.1706 7.2640 21 6 4.0672 2.5371 0.0066 22 6 3.4446 1.2858 0.0002 23 6 4.2550 0.0545 -0.0003 24 8 3.7101 -1.0315 0.0042 25 8 5.6003 0.1333 -0.0002 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2138 2.3195 0.0005 30 1 1.3302 4.5076 0.0011 31 1 3.8424 6.4698 1.9437 32 1 4.7223 3.9826 2.7182 33 1 6.1297 4.7087 1.9058 34 1 6.0056 6.6583 3.4331 35 1 4.5981 5.9321 4.2456 36 1 6.7710 7.0014 7.0193 37 1 5.1451 2.6049 0.0115 38 1 6.0889 -0.7011 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = -179.452134 kcal Electronic energy + Delta-G solvation = -25822.987339 eV Core-core repulsion = 21758.004518 eV Total energy + Delta-G solvation = -4064.982821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04794 -39.62346 -37.85570 -37.09017 -36.10772 -35.68799 -35.42820 -32.76166 -32.01908 -30.86737 -29.16333 -27.89740 -25.05859 -24.50776 -22.99871 -22.01509 -21.16036 -19.34953 -18.76911 -18.20715 -17.79312 -17.14082 -16.68238 -16.37935 -16.25599 -16.22270 -15.53106 -15.47561 -14.90394 -14.58280 -14.29384 -13.97525 -13.94545 -13.54842 -13.29337 -13.18828 -12.57330 -12.52530 -11.97143 -11.91779 -11.79750 -11.73701 -11.69784 -11.63119 -11.30987 -11.18293 -11.06139 -10.64941 -10.62516 -10.46619 -9.61480 -9.58441 -9.31111 -9.06703 -8.94806 -8.42263 -6.09457 -4.12926 0.27793 0.52653 0.71694 2.22715 2.66963 2.81098 3.10382 3.30157 3.34530 3.35427 3.39532 3.89647 4.14469 4.31647 4.40166 4.52795 4.68166 4.72904 4.80497 5.01511 5.08486 5.09659 5.27539 5.28587 5.44895 5.66265 5.71140 5.72732 6.12626 6.15370 6.35020 6.43238 6.68703 6.76665 7.35649 7.53657 7.62725 7.78676 7.88824 8.26254 8.92699 9.51861 11.01911 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003829 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.027133 B = 7310.881160 C = 8585.194241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.279 6.279 3 C 0.237 3.763 4 C -0.243 4.243 5 C 0.056 3.944 6 C -0.726 4.726 7 S 2.697 3.303 8 O -0.955 6.955 9 O -0.969 6.969 10 N -1.109 6.109 11 C 0.116 3.884 12 C 0.018 3.982 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.080 3.920 22 C -0.185 4.185 23 C 0.531 3.469 24 O -0.500 6.500 25 O -0.510 6.510 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.418 0.582 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.165 0.835 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 -10.377 -13.460 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.189 6.189 3 C 0.188 3.812 4 C -0.262 4.262 5 C 0.037 3.963 6 C -0.811 4.811 7 S 2.784 3.216 8 O -0.945 6.945 9 O -0.959 6.959 10 N -0.871 5.871 11 C -0.009 4.009 12 C -0.020 4.020 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.061 3.939 22 C -0.188 4.188 23 C 0.375 3.625 24 O -0.389 6.389 25 O -0.322 6.322 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.182 0.818 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.872 -10.112 -14.123 21.039 hybrid contribution 0.071 -1.267 1.245 1.777 sum -11.800 -11.379 -12.878 20.846 Atomic orbital electron populations 1.23306 0.77640 1.04919 1.01945 1.86359 1.21854 1.25366 1.85309 1.19239 0.90649 0.85229 0.86123 1.21313 1.00860 0.91568 1.12491 1.20953 0.92353 0.98428 0.84555 1.31120 1.04900 1.22491 1.22561 1.01803 0.73717 0.73040 0.72993 1.93592 1.38028 1.86024 1.76876 1.93557 1.64193 1.60970 1.77194 1.55501 1.59396 1.41571 1.30672 1.21699 0.91162 0.94275 0.93732 1.19277 0.97377 0.95730 0.89646 1.21050 1.29031 1.02857 1.03486 0.92266 1.24991 0.96366 0.95014 0.97842 1.69946 1.44714 1.16190 1.22297 0.86598 0.81264 0.79990 0.79808 1.20043 1.21269 1.20198 1.21202 1.01090 0.88997 0.82602 1.18424 0.89641 0.92319 1.18426 1.20354 0.80788 0.88632 0.72770 1.90929 1.72872 1.29425 1.45665 1.84578 1.19537 1.42139 1.85922 0.91814 0.91950 0.87466 0.83463 0.83104 0.74726 0.92958 0.91095 0.95482 0.95791 0.92766 0.81798 0.72499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.28 -3.22 8.57 -40.50 -0.35 -3.57 16 3 C 0.24 2.83 6.70 -38.67 -0.26 2.57 16 4 C -0.24 -2.38 9.03 -39.47 -0.36 -2.74 16 5 C 0.06 0.61 9.50 -39.53 -0.38 0.23 16 6 C -0.73 -9.33 5.94 -39.64 -0.24 -9.57 16 7 S 2.70 39.53 5.73 -107.50 -0.62 38.92 16 8 O -0.96 -16.61 16.74 -57.17 -0.96 -17.57 16 9 O -0.97 -15.27 17.26 -57.17 -0.99 -16.26 16 10 N -1.11 -17.24 6.00 -10.61 -0.06 -17.31 16 11 C 0.12 2.17 6.16 -4.04 -0.02 2.15 16 12 C 0.02 0.44 5.11 -27.89 -0.14 0.30 16 13 C -0.53 -14.01 9.11 -34.44 -0.31 -14.32 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 17 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.08 1.06 9.08 -39.18 -0.36 0.70 16 22 C -0.19 -2.45 5.88 -104.86 -0.62 -3.07 16 23 C 0.53 7.08 8.26 34.46 0.28 7.37 16 24 O -0.50 -7.71 15.95 -26.59 -0.42 -8.13 16 25 O -0.51 -5.44 12.68 -40.64 -0.52 -5.95 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.15 0.94 6.30 -52.49 -0.33 0.61 16 30 H 0.15 1.31 7.60 -52.49 -0.40 0.92 16 31 H 0.42 5.94 8.65 -34.47 -0.30 5.64 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.16 2.08 7.16 -52.48 -0.38 1.70 16 38 H 0.42 2.45 9.11 45.56 0.42 2.86 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -36.23 347.65 -7.88 -44.10 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.42 Total: 3.34 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.50 Total: -13.73 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.67 Total: -42.28 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -3.23 Total: -51.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 39.53 SS G_CDS: -0.62 Total: 38.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.23 -7.88 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.350 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds