Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00199 * 2 1 4 4 C 1.38717 * 120.15289 * 0.02562 * 3 2 1 5 5 C 1.38048 * 120.09045 * 179.97438 * 4 3 2 6 6 C 1.38560 * 120.40098 * 359.97438 * 5 4 3 7 7 S 1.76205 * 119.84398 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40326 * 203.53796 * 7 6 5 9 9 O 1.42101 * 106.40084 * 336.45899 * 7 6 5 10 10 N 1.65595 * 107.21838 * 89.99871 * 7 6 5 11 11 C 1.46504 * 120.00149 * 65.00200 * 10 7 6 12 12 C 1.52993 * 109.47354 * 164.99884 * 11 10 7 13 13 C 1.50701 * 109.47313 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00323 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99508 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46873 * 60.00334 * 17 15 13 19 19 H 1.48504 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47478 * 300.00152 * 17 15 13 21 21 C 1.37765 * 120.31277 * 359.76203 * 6 5 4 22 22 C 1.39764 * 119.89756 * 0.51333 * 21 6 5 23 23 C 1.47406 * 120.19600 * 179.74246 * 22 21 6 24 24 O 1.21507 * 120.00179 * 179.45254 * 23 22 21 25 25 O 1.34754 * 120.00035 * 359.72259 * 23 22 21 26 26 H 1.09001 * 109.47267 * 299.99941 * 1 2 3 27 27 H 1.08998 * 109.47177 * 60.00520 * 1 2 3 28 28 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.95195 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.79789 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00358 * 245.00332 * 10 7 6 32 32 H 1.08999 * 109.46649 * 285.00326 * 11 10 7 33 33 H 1.09001 * 109.47044 * 44.99613 * 11 10 7 34 34 H 1.08999 * 109.47603 * 299.99857 * 12 11 10 35 35 H 1.09007 * 109.46900 * 60.00086 * 12 11 10 36 36 H 0.96999 * 119.99333 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.05006 * 180.27819 * 21 6 5 38 38 H 0.96692 * 117.00027 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3038 3.6839 0.0016 7 16 4.0902 5.2607 0.0030 8 8 5.3879 5.0624 -0.5411 9 8 3.1511 6.1779 -0.5412 10 7 4.3084 5.6983 1.5851 11 6 5.2053 4.9203 2.4433 12 6 5.5225 5.7206 3.7080 13 6 6.4446 4.9200 4.5911 14 1 6.7714 3.9383 4.2814 15 6 6.8703 5.4404 5.7949 16 7 6.4712 6.6352 6.1726 17 14 8.0127 4.4477 6.8898 18 1 9.2724 4.1591 6.1582 19 1 8.3207 5.2246 8.1173 20 1 7.3538 3.1706 7.2640 21 6 4.0672 2.5371 0.0066 22 6 3.4446 1.2858 0.0002 23 6 4.2550 0.0545 -0.0003 24 8 3.7101 -1.0315 0.0042 25 8 5.6003 0.1333 -0.0002 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2138 2.3195 0.0005 30 1 1.3302 4.5076 0.0011 31 1 3.8424 6.4698 1.9437 32 1 4.7223 3.9826 2.7182 33 1 6.1297 4.7087 1.9058 34 1 6.0056 6.6583 3.4331 35 1 4.5981 5.9321 4.2456 36 1 6.7710 7.0014 7.0193 37 1 5.1451 2.6049 0.0115 38 1 6.0889 -0.7011 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -207.558718 kcal Electronic energy + Delta-G solvation = -25824.206132 eV Core-core repulsion = 21758.004518 eV Total energy + Delta-G solvation = -4066.201614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92005 -40.52082 -38.70637 -38.35437 -37.05724 -36.99052 -36.94363 -34.69758 -32.89523 -31.74007 -30.96834 -28.47244 -26.39466 -25.95897 -23.87053 -23.08011 -22.77480 -20.51393 -19.65625 -19.14657 -18.94796 -18.42137 -18.11699 -17.54080 -17.20569 -17.14908 -16.77700 -16.42353 -16.40377 -15.77194 -15.48000 -15.46502 -14.96022 -14.44977 -14.36737 -14.25400 -13.99450 -13.36356 -13.35651 -13.23391 -13.20563 -13.06449 -12.94841 -12.59834 -12.50544 -12.43312 -12.41550 -12.29947 -12.09093 -11.61132 -11.46126 -11.29427 -10.58895 -10.46990 -10.29390 -9.90210 -8.17868 -6.27786 -0.68844 -0.54615 -0.25200 1.29086 1.45511 1.47464 1.54930 1.94497 1.98011 2.02013 2.33518 2.45835 2.74476 3.17434 3.20896 3.51817 3.61532 3.86640 4.09840 4.22775 4.25587 4.29034 4.34266 4.41469 4.57548 4.59356 4.69898 4.80801 4.86144 4.90249 5.01476 5.27765 5.52497 5.53856 5.68562 5.85033 6.04700 6.07817 6.26923 6.88033 6.93925 7.41317 8.93877 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003829 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.027133 B = 7310.881160 C = 8585.194241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.302 6.302 3 C 0.234 3.766 4 C -0.230 4.230 5 C 0.055 3.945 6 C -0.731 4.731 7 S 2.718 3.282 8 O -0.986 6.986 9 O -0.977 6.977 10 N -1.109 6.109 11 C 0.131 3.869 12 C 0.020 3.980 13 C -0.543 4.543 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.072 3.928 22 C -0.208 4.208 23 C 0.532 3.468 24 O -0.528 6.528 25 O -0.508 6.508 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.423 0.577 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.002 0.998 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.161 0.839 38 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -11.586 -13.728 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.212 6.212 3 C 0.184 3.816 4 C -0.249 4.249 5 C 0.036 3.964 6 C -0.819 4.819 7 S 2.809 3.191 8 O -0.976 6.976 9 O -0.968 6.968 10 N -0.871 5.871 11 C 0.005 3.995 12 C -0.019 4.019 13 C -0.582 4.582 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.192 1.192 21 C 0.053 3.947 22 C -0.211 4.211 23 C 0.377 3.623 24 O -0.419 6.419 25 O -0.322 6.322 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.138 0.862 29 H 0.204 0.796 30 H 0.192 0.808 31 H 0.259 0.741 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.179 0.821 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -13.189 -11.298 -14.398 22.558 hybrid contribution 0.395 -0.952 1.267 1.633 sum -12.794 -12.250 -13.131 22.049 Atomic orbital electron populations 1.23686 0.75097 1.06517 1.03696 1.86341 1.24566 1.25415 1.84855 1.19461 0.90473 0.86221 0.85464 1.21687 1.02619 0.90124 1.10457 1.21312 0.91549 0.99957 0.83588 1.30715 1.05929 1.20648 1.24617 1.00933 0.72949 0.73263 0.71994 1.93551 1.40050 1.86679 1.77316 1.93541 1.64178 1.62009 1.77054 1.55349 1.59183 1.41926 1.30621 1.21329 0.92036 0.94205 0.91927 1.19153 0.96023 0.95150 0.91560 1.21557 1.29187 1.03440 1.04011 0.91451 1.25874 0.98003 0.96014 0.99489 1.70072 1.46211 1.17860 1.22848 0.85560 0.79366 0.78676 0.77813 1.19283 1.21167 1.19158 1.21189 1.01131 0.89276 0.83117 1.18598 0.90723 0.92109 1.19659 1.20473 0.81350 0.88403 0.72060 1.90905 1.73485 1.30269 1.47280 1.84551 1.18664 1.43684 1.85303 0.90223 0.89893 0.86195 0.79608 0.80763 0.74091 0.91371 0.91267 0.97938 0.97174 0.92779 0.82137 0.70318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.15 16 2 O -0.30 -6.39 8.57 -68.63 -0.59 -6.98 16 3 C 0.23 5.13 6.70 22.86 0.15 5.29 16 4 C -0.23 -3.75 9.03 22.34 0.20 -3.55 16 5 C 0.06 1.04 9.50 22.30 0.21 1.25 16 6 C -0.73 -17.76 5.94 22.23 0.13 -17.63 16 7 S 2.72 77.65 5.73 -56.49 -0.32 77.32 16 8 O -0.99 -34.23 16.74 -128.00 -2.14 -36.37 16 9 O -0.98 -29.54 17.26 -128.00 -2.21 -31.75 16 10 N -1.11 -34.05 6.00 -187.49 -1.12 -35.17 16 11 C 0.13 4.86 6.16 86.38 0.53 5.40 16 12 C 0.02 0.96 5.11 29.85 0.15 1.11 16 13 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 14 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 0.25 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 17 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 C 0.07 1.85 9.08 22.53 0.20 2.06 16 22 C -0.21 -5.33 5.88 -20.02 -0.12 -5.44 16 23 C 0.53 14.00 8.26 70.24 0.58 14.58 16 24 O -0.53 -16.15 15.95 26.81 0.43 -15.73 16 25 O -0.51 -10.56 12.68 -56.65 -0.72 -11.28 16 26 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 27 H 0.08 0.48 7.66 -2.39 -0.02 0.46 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.19 1.48 6.30 -2.91 -0.02 1.46 16 30 H 0.18 2.43 7.60 -2.91 -0.02 2.41 16 31 H 0.42 11.94 8.65 -96.74 -0.84 11.10 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.60 7.75 -2.39 -0.02 2.58 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.16 4.08 7.16 -2.91 -0.02 4.06 16 38 H 0.43 4.79 9.11 -74.06 -0.67 4.11 16 Total: -1.00 -77.94 347.65 -0.89 -78.82 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.38 Total: 14.33 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.86 Total: -23.88 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -0.84 Total: -89.17 kcal Atomic # 8 Polarization: -96.87 SS G_CDS: -5.23 Total: -102.10 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 77.65 SS G_CDS: -0.32 Total: 77.32 kcal Total: -77.94 -0.89 -78.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.735 kcal (2) G-P(sol) polarization free energy of solvation -77.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds