Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47338 * 300.00351 * 3 2 1 6 6 H 1.48510 * 109.46694 * 59.99924 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99965 * 154.81604 * 7 2 1 9 9 N 1.36936 * 119.99991 * 334.80524 * 7 2 1 10 10 C 1.46503 * 119.99771 * 129.84373 * 9 7 2 11 11 C 1.54964 * 110.92114 * 307.94237 * 10 9 7 12 12 C 1.54277 * 104.15951 * 156.29439 * 11 10 9 13 13 C 1.53874 * 106.64006 * 336.44856 * 12 11 10 14 14 C 1.54274 * 106.59867 * 359.97272 * 13 12 11 15 15 S 1.65597 * 120.00409 * 309.84411 * 9 7 2 16 16 O 1.42094 * 106.40374 * 23.53885 * 15 9 7 17 17 O 1.42103 * 106.40396 * 156.45826 * 15 9 7 18 18 C 1.76202 * 107.21872 * 269.99804 * 15 9 7 19 19 C 1.38244 * 119.98755 * 269.72591 * 18 15 9 20 20 C 1.38212 * 120.01225 * 179.72448 * 19 18 15 21 21 C 1.38354 * 119.98656 * 0.55085 * 20 19 18 22 22 Cl 1.73593 * 120.01200 * 179.70031 * 21 20 19 23 23 C 1.38348 * 119.97381 * 359.72415 * 21 20 19 24 24 C 1.38223 * 119.98690 * 0.02562 * 23 21 20 25 25 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 26 26 H 1.09000 * 110.67633 * 184.63607 * 10 9 7 27 27 H 1.09003 * 110.47854 * 37.64521 * 11 10 9 28 28 H 1.08998 * 110.53029 * 274.97362 * 11 10 9 29 29 H 1.08998 * 110.03031 * 217.13376 * 12 11 10 30 30 H 1.08997 * 110.02931 * 95.75617 * 12 11 10 31 31 H 1.08998 * 110.03425 * 119.25939 * 13 12 11 32 32 H 1.09003 * 110.02775 * 240.64587 * 13 12 11 33 33 H 1.08989 * 110.48474 * 142.29112 * 14 13 12 34 34 H 1.09002 * 110.48311 * 264.80582 * 14 13 12 35 35 H 1.08005 * 119.99193 * 0.02562 * 19 18 15 36 36 H 1.07997 * 120.00649 * 180.27042 * 20 19 18 37 37 H 1.07996 * 120.00782 * 179.97438 * 23 21 20 38 38 H 1.07997 * 119.99080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0132 -1.2465 -0.3985 9 7 1.4231 -2.3319 0.5038 10 6 1.4204 -3.5688 -0.2812 11 6 0.8665 -3.3183 -1.7067 12 6 1.4718 -4.4578 -2.5524 13 6 2.7433 -4.9220 -1.8206 14 6 2.8675 -4.0481 -0.5554 15 16 0.7162 -2.2999 2.0010 16 8 0.3822 -0.9429 2.2581 17 8 -0.2391 -3.3517 2.0162 18 6 1.9569 -2.7376 3.1730 19 6 2.1420 -4.0627 3.5210 20 6 3.1188 -4.4072 4.4360 21 6 3.9039 -3.4246 5.0123 22 17 5.1258 -3.8558 6.1675 23 6 3.7145 -2.0981 4.6680 24 6 2.7407 -1.7552 3.7489 25 1 -0.4849 0.8401 0.0004 26 1 0.8459 -4.3446 0.2249 27 1 1.1977 -2.3491 -2.0796 28 1 -0.2219 -3.3777 -1.7097 29 1 1.7262 -4.0903 -3.5465 30 1 0.7633 -5.2824 -2.6295 31 1 2.6515 -5.9717 -1.5419 32 1 3.6147 -4.7805 -2.4600 33 1 3.2386 -4.6394 0.2816 34 1 3.5242 -3.1983 -0.7417 35 1 1.5263 -4.8293 3.0740 36 1 3.2662 -5.4429 4.7045 37 1 4.3267 -1.3305 5.1178 38 1 2.5925 -0.7198 3.4803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057628542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = -57.557415 kcal Electronic energy + Delta-G solvation = -24798.779097 eV Core-core repulsion = 21179.791192 eV Total energy + Delta-G solvation = -3618.987905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.81354 -37.83978 -36.39276 -35.71572 -34.31364 -34.00017 -31.48289 -30.80737 -30.44779 -28.01248 -26.86854 -24.37694 -22.60342 -22.56553 -19.82196 -19.62714 -18.85109 -17.80708 -16.66177 -16.07390 -15.64256 -15.32523 -15.08567 -14.78595 -14.33096 -14.21652 -13.52011 -13.37342 -13.26975 -12.82664 -12.69207 -12.29266 -12.18818 -11.81643 -11.56955 -11.46640 -11.44160 -11.13940 -10.81016 -10.75321 -10.72373 -10.44951 -10.44464 -10.38098 -10.33143 -10.14816 -9.82409 -9.75626 -9.58758 -8.81189 -8.78867 -8.69310 -7.68047 -6.59928 -4.21250 1.08577 1.53693 1.90076 2.15390 3.17106 3.24892 3.28892 3.71070 4.09461 4.59806 4.85522 4.94830 5.04724 5.20078 5.27842 5.35521 5.44570 5.49626 5.62953 5.82989 6.00126 6.00989 6.07728 6.16777 6.20377 6.23618 6.25020 6.33577 6.36640 6.42328 6.45085 6.60210 6.68765 6.84036 6.99437 7.04414 7.11790 7.35508 7.55986 8.17147 8.83772 9.27791 10.45269 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.005656 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.685042 B = 4949.128500 C = 6051.413690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.064 3.936 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.272 4.272 8 H 0.084 0.916 9 N -0.804 5.804 10 C 0.153 3.847 11 C -0.113 4.113 12 C -0.124 4.124 13 C -0.120 4.120 14 C -0.138 4.138 15 S 2.548 3.452 16 O -0.946 6.946 17 O -1.012 7.012 18 C -0.653 4.653 19 C -0.025 4.025 20 C -0.139 4.139 21 C -0.006 4.006 22 Cl -0.082 7.082 23 C -0.138 4.138 24 C -0.011 4.011 25 H 0.280 0.720 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -5.766 1.539 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.155 4.155 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.421 4.421 8 H 0.102 0.898 9 N -0.626 5.626 10 C 0.045 3.955 11 C -0.152 4.152 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.177 4.177 15 S 2.647 3.353 16 O -0.934 6.934 17 O -1.001 7.001 18 C -0.728 4.728 19 C -0.044 4.044 20 C -0.159 4.159 21 C -0.033 4.033 22 Cl -0.054 7.054 23 C -0.157 4.157 24 C -0.030 4.030 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.132 -5.695 2.171 8.645 hybrid contribution 1.179 0.489 0.694 1.453 sum 7.312 -5.206 2.865 9.422 Atomic orbital electron populations 1.69889 1.07198 1.29564 1.33819 1.25695 0.94864 1.00740 0.94241 0.86125 0.80193 0.81682 0.78302 1.18765 1.20514 1.19792 1.18989 0.98814 0.85761 1.38490 0.89825 1.52781 1.73664 1.13512 1.22659 1.21711 0.94498 0.86559 0.92703 1.22508 0.99584 0.99094 0.94044 1.22118 0.96772 0.98534 0.98801 1.22041 0.97783 0.98880 0.97081 1.22760 0.99170 0.99356 0.96454 1.11199 0.77375 0.73402 0.73358 1.93416 1.81895 1.33673 1.84445 1.93306 1.61111 1.58671 1.87053 1.32892 1.21986 0.99657 1.18287 1.20876 0.94405 0.95392 0.93754 1.21100 0.96915 0.98743 0.99103 1.21054 0.92967 0.94939 0.94356 1.98346 1.54545 1.93555 1.58909 1.21175 1.00212 0.94246 1.00098 1.20935 0.90808 0.99807 0.91429 0.90970 0.89941 0.89331 0.92262 0.92421 0.92671 0.92661 0.92513 0.92835 0.90353 0.84419 0.85115 0.85000 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.98 11.74 55.49 0.65 -19.33 16 2 C 0.06 1.53 3.99 -17.43 -0.07 1.47 16 3 Si 0.91 18.85 29.62 -169.99 -5.04 13.82 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.27 -6.24 7.46 -15.06 -0.11 -6.35 16 8 H 0.08 1.81 6.95 -52.49 -0.36 1.45 16 9 N -0.80 -18.00 2.75 -51.46 -0.14 -18.15 16 10 C 0.15 3.00 3.31 -65.89 -0.22 2.78 16 11 C -0.11 -2.08 6.35 -25.03 -0.16 -2.24 16 12 C -0.12 -1.81 6.80 -25.61 -0.17 -1.98 16 13 C -0.12 -1.67 6.80 -25.61 -0.17 -1.84 16 14 C -0.14 -2.27 6.40 -25.07 -0.16 -2.43 16 15 S 2.55 60.68 5.45 -107.50 -0.59 60.10 16 16 O -0.95 -25.20 13.48 -57.17 -0.77 -25.97 16 17 O -1.01 -25.82 15.84 -57.17 -0.91 -26.73 16 18 C -0.65 -13.23 5.97 -39.58 -0.24 -13.47 16 19 C -0.03 -0.45 9.52 -39.59 -0.38 -0.83 16 20 C -0.14 -2.18 9.83 -39.55 -0.39 -2.57 16 21 C -0.01 -0.10 6.32 -39.50 -0.25 -0.35 16 22 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 16 23 C -0.14 -2.23 9.83 -39.55 -0.39 -2.62 16 24 C -0.01 -0.20 9.52 -39.59 -0.38 -0.58 16 25 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.08 1.63 6.95 -51.93 -0.36 1.27 16 27 H 0.09 1.77 7.06 -51.93 -0.37 1.40 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.83 8.14 -51.94 -0.42 0.41 16 34 H 0.08 1.35 6.75 -51.93 -0.35 1.00 16 35 H 0.14 2.33 7.61 -52.48 -0.40 1.93 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.14 2.70 7.62 -52.49 -0.40 2.30 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -28.31 337.48 -11.05 -39.36 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.76 Total: 5.41 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -3.08 Total: -31.01 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.51 Total: -37.48 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -1.68 Total: -52.69 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.04 Total: 13.82 kcal Atomic # 16 Polarization: 60.68 SS G_CDS: -0.59 Total: 60.10 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.31 -11.05 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057628542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.195 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds