Wall clock time and date at job start Tue Mar 31 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48504 * 109.47114 * 270.00024 * 3 2 1 5 5 H 1.48495 * 109.47287 * 29.99680 * 3 2 1 6 6 H 1.48493 * 109.47280 * 150.00093 * 3 2 1 7 7 C 1.38796 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00519 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99789 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00094 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47284 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99867 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00287 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47101 * 179.97438 * 14 13 11 16 16 O 1.21246 * 120.00132 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00323 * 179.97438 * 15 14 13 18 18 C 1.34774 * 119.99919 * 179.97438 * 17 15 14 19 19 O 1.21664 * 120.00298 * 0.02562 * 18 17 15 20 20 C 1.46437 * 119.99353 * 179.97438 * 18 17 15 21 21 C 1.36761 * 125.45863 * 180.02562 * 20 18 17 22 22 C 1.37415 * 113.28379 * 179.97438 * 21 20 18 23 23 C 1.33858 * 115.11391 * 0.02562 * 22 21 20 24 24 S 1.70621 * 110.96030 * 359.97438 * 23 22 21 25 25 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47320 * 59.99975 * 10 9 7 27 27 H 1.09000 * 109.46590 * 299.99864 * 10 9 7 28 28 H 1.09004 * 109.46796 * 60.00086 * 14 13 11 29 29 H 1.08994 * 109.47475 * 299.99551 * 14 13 11 30 30 H 0.97000 * 119.99722 * 0.02562 * 17 15 14 31 31 H 1.07995 * 123.35569 * 0.24058 * 21 20 18 32 32 H 1.08002 * 122.43822 * 180.02562 * 22 21 20 33 33 H 1.07995 * 124.52149 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3411 -2.2998 0.0025 13 8 6.0438 -4.4895 0.0016 14 6 7.4865 -4.6532 0.0022 15 6 7.8255 -6.1215 0.0021 16 8 6.9388 -6.9485 0.0012 17 7 9.1144 -6.5157 0.0021 18 6 9.4175 -7.8289 0.0026 19 8 8.5277 -8.6586 0.0025 20 6 10.8179 -8.2570 0.0020 21 6 11.2510 -9.5542 0.0019 22 6 12.6203 -9.6697 0.0007 23 6 13.2883 -8.5097 0.0004 24 16 12.2121 -7.1857 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8893 27 1 3.6433 -3.4317 0.8907 28 1 7.9050 -4.1841 0.8927 29 1 7.9059 -4.1831 -0.8873 30 1 9.8238 -5.8541 0.0025 31 1 10.5834 -10.4031 -0.0016 32 1 13.1209 -10.6267 0.0001 33 1 14.3648 -8.4234 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058681697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:42 Heat of formation + Delta-G solvation = -109.374172 kcal Electronic energy + Delta-G solvation = -21349.803920 eV Core-core repulsion = 17594.779683 eV Total energy + Delta-G solvation = -3755.024236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58353 -40.30810 -38.85842 -37.72719 -36.28825 -35.12459 -32.50613 -30.88289 -30.39268 -28.73565 -25.95909 -25.68036 -23.36039 -21.31480 -21.06674 -20.04313 -19.45806 -18.21491 -17.44207 -17.32346 -17.09697 -16.52161 -16.25319 -16.09129 -15.70188 -15.04241 -14.68267 -14.48816 -14.22109 -14.09876 -13.66305 -13.40397 -13.21802 -12.98159 -12.90562 -12.64452 -12.27469 -11.69803 -11.37828 -11.32985 -11.07083 -10.90651 -10.78945 -10.65134 -10.40518 -10.01006 -9.90405 -9.55522 -9.24931 -9.07193 -8.65839 -7.05390 -6.34478 -4.09611 -0.20102 0.78462 1.19200 1.44894 1.70998 1.98298 2.36326 2.52912 2.73898 3.08253 3.27563 3.42830 3.48569 3.87610 4.07459 4.25999 4.37266 4.62149 4.64544 4.69743 4.70901 4.84869 5.04060 5.08976 5.29068 5.48019 5.59826 5.62413 5.68303 5.93707 6.07626 6.32213 7.35337 7.43482 7.84084 7.88578 8.38069 9.10039 10.74540 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.001890 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.131071 B =14808.528010 C =15457.212657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.093 0.907 9 S -0.138 6.138 10 C -0.099 4.099 11 C 0.483 3.517 12 O -0.487 6.487 13 O -0.334 6.334 14 C 0.048 3.952 15 C 0.510 3.490 16 O -0.436 6.436 17 N -0.684 5.684 18 C 0.589 3.411 19 O -0.454 6.454 20 C -0.281 4.281 21 C -0.042 4.042 22 C -0.151 4.151 23 C -0.219 4.219 24 S 0.209 5.791 25 H 0.272 0.728 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.413 0.587 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.532 -15.804 0.085 34.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.682 3.318 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.111 0.889 9 S 0.088 5.912 10 C -0.247 4.247 11 C 0.324 3.676 12 O -0.373 6.373 13 O -0.251 6.251 14 C -0.030 4.030 15 C 0.295 3.705 16 O -0.302 6.302 17 N -0.349 5.349 18 C 0.377 3.623 19 O -0.325 6.325 20 C -0.402 4.402 21 C -0.075 4.075 22 C -0.182 4.182 23 C -0.357 4.357 24 S 0.476 5.524 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.248 0.752 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 30.290 -14.099 0.086 33.411 hybrid contribution -0.108 -1.421 -0.030 1.426 sum 30.183 -15.520 0.056 33.939 Atomic orbital electron populations 1.69934 1.05871 1.27882 1.47470 1.24700 0.94469 0.98937 0.93100 0.86740 0.81812 0.83332 0.79957 1.19125 1.19781 1.15987 1.22260 0.87548 0.97851 1.59409 0.88937 1.84749 1.10324 0.98525 1.97601 1.23034 0.89079 1.04699 1.07858 1.23439 0.92273 0.79731 0.72108 1.90675 1.58692 1.43488 1.44441 1.86608 1.21927 1.31651 1.84925 1.22571 0.82034 0.92398 1.05961 1.20578 0.81905 0.91272 0.76731 1.90904 1.45727 1.53980 1.39585 1.44595 1.09968 1.09266 1.71111 1.17142 0.87295 0.81708 0.76196 1.90993 1.47562 1.51294 1.42613 1.24469 0.96266 0.98704 1.20739 1.20910 0.95608 0.96072 0.94948 1.20102 0.93235 0.99637 1.05256 1.25422 1.05354 0.97160 1.07738 1.83017 0.93873 1.08226 1.67332 0.91790 0.86793 0.86759 0.87222 0.87213 0.75167 0.82485 0.83237 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.08 27.74 -169.99 -4.72 16.36 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 7 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 8 H 0.09 2.74 8.03 -52.49 -0.42 2.31 16 9 S -0.14 -3.35 18.55 -107.50 -1.99 -5.35 16 10 C -0.10 -1.91 6.27 36.00 0.23 -1.68 16 11 C 0.48 8.40 7.98 36.00 0.29 8.68 16 12 O -0.49 -9.20 15.61 -18.75 -0.29 -9.49 16 13 O -0.33 -5.11 9.75 -45.90 -0.45 -5.55 16 14 C 0.05 0.51 5.94 36.01 0.21 0.73 16 15 C 0.51 6.05 7.85 -10.98 -0.09 5.96 16 16 O -0.44 -7.52 14.90 -25.38 -0.38 -7.90 16 17 N -0.68 -5.78 5.23 -12.64 -0.07 -5.85 16 18 C 0.59 6.26 7.72 -12.96 -0.10 6.16 16 19 O -0.45 -6.97 15.24 -18.58 -0.28 -7.26 16 20 C -0.28 -2.09 6.45 -36.82 -0.24 -2.33 16 21 C -0.04 -0.28 10.01 -40.42 -0.40 -0.68 16 22 C -0.15 -0.68 10.15 -41.42 -0.42 -1.10 16 23 C -0.22 -0.79 10.92 29.19 0.32 -0.48 16 24 S 0.21 0.84 22.15 -107.50 -2.38 -1.54 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.11 2.08 8.14 -51.92 -0.42 1.65 16 27 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 28 H 0.11 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.11 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.41 1.71 7.80 -40.82 -0.32 1.39 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.17 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -37.70 333.79 -7.60 -45.30 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -2.85 Total: -2.02 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 0.01 Total: 3.51 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.71 Total: -31.08 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.40 Total: -30.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.72 Total: 16.36 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -4.38 Total: -6.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.70 -7.60 -45.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.077 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds