Wall clock time and date at job start Tue Mar 31 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47295 * 2 1 4 4 C 1.46497 * 119.99861 * 275.00099 * 3 2 1 5 5 C 1.50694 * 109.47314 * 274.99610 * 4 3 2 6 6 H 1.08000 * 119.99886 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00370 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00429 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47448 * 120.00031 * 9 7 5 12 12 H 1.48501 * 109.47164 * 240.00155 * 9 7 5 13 13 S 1.65597 * 119.99548 * 95.00120 * 3 2 1 14 14 O 1.42104 * 106.39761 * 156.46395 * 13 3 2 15 15 O 1.42096 * 106.40912 * 23.54124 * 13 3 2 16 16 C 1.76207 * 107.21824 * 269.99839 * 13 3 2 17 17 C 1.32571 * 119.99740 * 115.00522 * 16 13 3 18 18 C 1.47805 * 119.99581 * 180.02562 * 17 16 13 19 19 C 1.39547 * 120.12244 * 179.97438 * 18 17 16 20 20 C 1.37953 * 119.86560 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.12805 * 0.27927 * 20 19 18 22 22 Cl 1.73603 * 119.86883 * 179.72112 * 21 20 19 23 23 C 1.38462 * 120.26156 * 359.44575 * 21 20 19 24 24 C 1.37955 * 120.12598 * 0.55031 * 23 21 20 25 25 H 1.09000 * 109.47010 * 299.99678 * 1 2 3 26 26 H 1.09000 * 109.47331 * 59.99834 * 1 2 3 27 27 H 1.09007 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47318 * 239.99953 * 2 1 3 29 29 H 1.08997 * 109.47074 * 120.00624 * 2 1 3 30 30 H 1.08997 * 109.47540 * 35.00263 * 4 3 2 31 31 H 1.09008 * 109.46739 * 154.99985 * 4 3 2 32 32 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 33 33 H 1.07997 * 119.99514 * 295.00292 * 16 13 3 34 34 H 1.08001 * 120.00025 * 359.97438 * 17 16 13 35 35 H 1.08000 * 120.06840 * 359.95471 * 19 18 17 36 36 H 1.08002 * 119.93154 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.94291 * 180.25786 * 23 21 20 38 38 H 1.08004 * 120.06193 * 179.75071 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8529 2.3614 -3.0843 8 7 3.0284 3.1870 -3.6910 9 14 5.5093 1.9644 -3.8513 10 1 6.2454 1.0165 -2.9766 11 1 5.3017 1.3477 -5.1862 12 1 6.2979 3.2138 -4.0004 13 16 2.4122 2.1200 1.4287 14 8 3.3284 3.1569 1.1049 15 8 2.7096 1.0798 2.3499 16 6 0.9555 2.9117 2.0254 17 6 0.3950 2.5039 3.1555 18 6 -0.8272 3.1677 3.6557 19 6 -1.4196 2.7402 4.8447 20 6 -2.5600 3.3639 5.3070 21 6 -3.1200 4.4081 4.5907 22 17 -4.5593 5.1834 5.1749 23 6 -2.5334 4.8403 3.4133 24 6 -1.3928 4.2244 2.9412 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3617 1.8098 -1.9453 31 1 2.0922 3.1803 -1.0755 32 1 3.2802 3.5895 -4.5368 33 1 0.5194 3.7292 1.4705 34 1 0.8311 1.6862 3.7102 35 1 -0.9864 1.9226 5.4017 36 1 -3.0196 3.0336 6.2268 37 1 -2.9722 5.6580 2.8609 38 1 -0.9384 4.5597 2.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069351021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:15 Heat of formation + Delta-G solvation = -39.876204 kcal Electronic energy + Delta-G solvation = -23072.072559 eV Core-core repulsion = 19453.851368 eV Total energy + Delta-G solvation = -3618.221190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73048 -36.96821 -36.65796 -36.08378 -35.22162 -34.41445 -32.68055 -31.54563 -30.02376 -29.66877 -26.63015 -24.12646 -23.18168 -23.08242 -21.76609 -20.53116 -18.15038 -17.79266 -17.09283 -16.55898 -16.31041 -15.81961 -15.52515 -15.18182 -14.55727 -14.31801 -13.96666 -13.90236 -13.81415 -13.36095 -13.00016 -12.68609 -12.28422 -12.17985 -12.12123 -12.00314 -11.76368 -11.70155 -11.48301 -11.36375 -11.16527 -11.02960 -10.91756 -10.74145 -10.53106 -10.45994 -10.35636 -9.97904 -9.74105 -9.46676 -8.69691 -8.45263 -8.09492 -6.07239 -4.10908 0.16560 0.91070 1.00200 1.72936 1.79921 3.31141 3.34969 3.39043 3.44043 3.66595 4.17793 4.32348 4.43761 4.46958 4.54699 4.81836 4.88183 4.98303 5.13403 5.26787 5.27815 5.39306 5.54609 5.66551 5.70399 5.76848 5.81032 5.83913 5.93924 5.99303 6.26159 6.31660 6.41135 6.56179 6.61700 7.20856 7.37122 7.58074 7.90482 8.18994 8.91804 9.54383 11.01495 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.002747 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.842034 B =10188.800299 C =10587.190516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.980 5.980 4 C 0.254 3.746 5 C -0.527 4.527 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.675 3.325 14 O -0.941 6.941 15 O -0.981 6.981 16 C -0.726 4.726 17 C 0.023 3.977 18 C -0.076 4.076 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.026 4.026 22 Cl -0.070 7.070 23 C -0.113 4.113 24 C -0.081 4.081 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.263 0.737 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.022 -0.757 15.932 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 N -0.820 5.820 4 C 0.132 3.868 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.764 3.236 14 O -0.932 6.932 15 O -0.971 6.971 16 C -0.829 4.829 17 C 0.004 3.996 18 C -0.078 4.078 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.052 4.052 22 Cl -0.041 7.041 23 C -0.132 4.132 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.383 -0.545 16.202 21.021 hybrid contribution -0.177 0.355 -0.603 0.722 sum -13.560 -0.190 15.598 20.669 Atomic orbital electron populations 1.22264 0.97310 1.01566 1.02057 1.21191 0.93006 0.82963 1.03810 1.57405 1.81207 1.21213 1.22173 1.19121 0.97617 0.91278 0.78739 1.21517 1.02006 1.27622 1.05501 0.91978 1.24928 0.97387 0.94823 0.96903 1.69922 1.36092 1.30283 1.17226 0.86458 0.83850 0.78356 0.78883 1.19601 1.21009 1.20816 1.02402 0.74538 0.73783 0.72891 1.93630 1.58759 1.57640 1.83122 1.93487 1.83448 1.56744 1.63467 1.34592 1.25212 1.15515 1.07623 1.21932 0.90217 0.94430 0.93048 1.19373 0.95965 0.96860 0.95566 1.21361 0.94596 0.99187 0.94945 1.21015 0.96469 0.95493 1.00459 1.21114 0.90739 0.96934 0.96426 1.98381 1.37091 1.80327 1.88292 1.21062 0.96115 1.00888 0.95088 1.21476 0.94429 0.94279 0.99713 0.93470 0.91858 0.92098 0.89422 0.90318 0.94412 0.94294 0.92741 0.82304 0.83715 0.84182 0.84477 0.84392 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.89 16 3 N -0.98 -19.36 2.77 -115.67 -0.32 -19.68 16 4 C 0.25 6.13 5.10 -5.20 -0.03 6.10 16 5 C -0.53 -14.43 9.38 -34.44 -0.32 -14.75 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 S 2.68 50.54 5.80 -107.50 -0.62 49.92 16 14 O -0.94 -21.94 16.99 -57.17 -0.97 -22.92 16 15 O -0.98 -18.67 15.44 -57.17 -0.88 -19.56 16 16 C -0.73 -10.65 9.74 28.83 0.28 -10.37 16 17 C 0.02 0.29 9.42 -37.58 -0.35 -0.06 16 18 C -0.08 -0.84 5.87 -105.01 -0.62 -1.45 16 19 C -0.08 -0.74 9.78 -39.20 -0.38 -1.12 16 20 C -0.12 -0.98 9.81 -39.60 -0.39 -1.37 16 21 C -0.03 -0.24 6.32 -39.42 -0.25 -0.49 16 22 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 23 C -0.11 -1.08 9.81 -39.60 -0.39 -1.47 16 24 C -0.08 -0.87 9.40 -39.20 -0.37 -1.24 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 29 H 0.08 1.20 6.91 -51.93 -0.36 0.84 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.04 0.99 7.61 -51.92 -0.40 0.60 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.16 2.16 6.04 -52.49 -0.32 1.84 16 34 H 0.15 1.62 7.21 -52.49 -0.38 1.24 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.14 1.44 6.17 -52.48 -0.32 1.12 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -32.49 355.71 -10.48 -42.97 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.70 Total: -0.88 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.56 Total: -24.66 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.42 Total: -44.66 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.85 Total: -42.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.62 Total: 49.92 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.49 -10.48 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.089 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds