Wall clock time and date at job start Tue Mar 31 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47295 * 2 1 4 4 C 1.46497 * 119.99861 * 275.00099 * 3 2 1 5 5 C 1.50694 * 109.47314 * 274.99610 * 4 3 2 6 6 H 1.08000 * 119.99886 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00370 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00429 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47448 * 120.00031 * 9 7 5 12 12 H 1.48501 * 109.47164 * 240.00155 * 9 7 5 13 13 S 1.65597 * 119.99548 * 95.00120 * 3 2 1 14 14 O 1.42104 * 106.39761 * 156.46395 * 13 3 2 15 15 O 1.42096 * 106.40912 * 23.54124 * 13 3 2 16 16 C 1.76207 * 107.21824 * 269.99839 * 13 3 2 17 17 C 1.32571 * 119.99740 * 115.00522 * 16 13 3 18 18 C 1.47805 * 119.99581 * 180.02562 * 17 16 13 19 19 C 1.39547 * 120.12244 * 179.97438 * 18 17 16 20 20 C 1.37953 * 119.86560 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.12805 * 0.27927 * 20 19 18 22 22 Cl 1.73603 * 119.86883 * 179.72112 * 21 20 19 23 23 C 1.38462 * 120.26156 * 359.44575 * 21 20 19 24 24 C 1.37955 * 120.12598 * 0.55031 * 23 21 20 25 25 H 1.09000 * 109.47010 * 299.99678 * 1 2 3 26 26 H 1.09000 * 109.47331 * 59.99834 * 1 2 3 27 27 H 1.09007 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47318 * 239.99953 * 2 1 3 29 29 H 1.08997 * 109.47074 * 120.00624 * 2 1 3 30 30 H 1.08997 * 109.47540 * 35.00263 * 4 3 2 31 31 H 1.09008 * 109.46739 * 154.99985 * 4 3 2 32 32 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 33 33 H 1.07997 * 119.99514 * 295.00292 * 16 13 3 34 34 H 1.08001 * 120.00025 * 359.97438 * 17 16 13 35 35 H 1.08000 * 120.06840 * 359.95471 * 19 18 17 36 36 H 1.08002 * 119.93154 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.94291 * 180.25786 * 23 21 20 38 38 H 1.08004 * 120.06193 * 179.75071 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8529 2.3614 -3.0843 8 7 3.0284 3.1870 -3.6910 9 14 5.5093 1.9644 -3.8513 10 1 6.2454 1.0165 -2.9766 11 1 5.3017 1.3477 -5.1862 12 1 6.2979 3.2138 -4.0004 13 16 2.4122 2.1200 1.4287 14 8 3.3284 3.1569 1.1049 15 8 2.7096 1.0798 2.3499 16 6 0.9555 2.9117 2.0254 17 6 0.3950 2.5039 3.1555 18 6 -0.8272 3.1677 3.6557 19 6 -1.4196 2.7402 4.8447 20 6 -2.5600 3.3639 5.3070 21 6 -3.1200 4.4081 4.5907 22 17 -4.5593 5.1834 5.1749 23 6 -2.5334 4.8403 3.4133 24 6 -1.3928 4.2244 2.9412 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3617 1.8098 -1.9453 31 1 2.0922 3.1803 -1.0755 32 1 3.2802 3.5895 -4.5368 33 1 0.5194 3.7292 1.4705 34 1 0.8311 1.6862 3.7102 35 1 -0.9864 1.9226 5.4017 36 1 -3.0196 3.0336 6.2268 37 1 -2.9722 5.6580 2.8609 38 1 -0.9384 4.5597 2.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069351021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:14 Heat of formation + Delta-G solvation = -59.573882 kcal Electronic energy + Delta-G solvation = -23072.926714 eV Core-core repulsion = 19453.851368 eV Total energy + Delta-G solvation = -3619.075346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48261 -38.24562 -37.66255 -37.65316 -36.81843 -35.37863 -34.69464 -32.25700 -31.51212 -30.55318 -28.48679 -25.06922 -24.88854 -23.87917 -23.20521 -21.51007 -19.60117 -18.88654 -18.48135 -18.19929 -17.77299 -17.20886 -16.59046 -16.32460 -16.07878 -15.49944 -15.12190 -14.75261 -14.69201 -14.63561 -14.55641 -13.85693 -13.70823 -13.58637 -13.34246 -13.15802 -13.03501 -12.97569 -12.94947 -12.72646 -12.67423 -12.50686 -12.22703 -12.15824 -11.92679 -11.81184 -11.70446 -11.63525 -11.43169 -10.57622 -10.16826 -9.77351 -9.52365 -8.18481 -6.29568 -0.76061 -0.42246 0.20954 0.85492 1.02313 1.39639 1.42450 1.53850 2.17010 2.43048 2.60732 2.84096 3.12877 3.40288 3.54921 3.73210 3.81524 4.01822 4.03612 4.17415 4.22960 4.47721 4.50680 4.55373 4.73206 4.75922 4.90890 4.93199 5.06451 5.08542 5.11213 5.17906 5.21049 5.43524 5.46818 5.54960 5.64073 5.74299 5.97164 6.13315 6.79025 7.39010 8.89331 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.002747 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.842034 B =10188.800299 C =10587.190516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.108 3.892 3 N -0.989 5.989 4 C 0.270 3.730 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.270 1.270 12 H -0.281 1.281 13 S 2.682 3.318 14 O -0.998 6.998 15 O -0.988 6.988 16 C -0.745 4.745 17 C 0.059 3.941 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.026 4.026 22 Cl -0.063 7.063 23 C -0.122 4.122 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -1.707 17.843 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.827 5.827 4 C 0.146 3.854 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.196 1.196 12 H -0.206 1.206 13 S 2.777 3.223 14 O -0.988 6.988 15 O -0.978 6.978 16 C -0.854 4.854 17 C 0.039 3.961 18 C -0.103 4.103 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.053 4.053 22 Cl -0.034 7.034 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.180 0.820 37 H 0.167 0.833 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.824 -1.544 18.094 23.442 hybrid contribution 0.093 0.668 -0.988 1.197 sum -14.731 -0.876 17.106 22.592 Atomic orbital electron populations 1.22200 0.94781 1.03421 1.02041 1.21430 0.95179 0.81203 1.03903 1.57267 1.81920 1.22564 1.20986 1.18642 0.95968 0.90476 0.80307 1.21870 1.03272 1.27424 1.05900 0.92842 1.25732 1.00798 0.94781 0.97511 1.70010 1.37705 1.31094 1.17696 0.85545 0.79743 0.78171 0.78478 1.19337 1.19571 1.20647 1.01690 0.75149 0.73055 0.72426 1.93556 1.62179 1.59139 1.83944 1.93460 1.84363 1.56947 1.63048 1.33769 1.24539 1.17284 1.09770 1.22242 0.89507 0.93171 0.91192 1.19374 0.96003 0.97847 0.97078 1.21687 0.94106 0.99236 0.93827 1.21334 0.96153 0.94805 1.01114 1.21332 0.90760 0.96949 0.96255 1.98389 1.36685 1.80251 1.88121 1.21202 0.95949 1.01312 0.95558 1.21584 0.94881 0.94517 0.99813 0.92261 0.93115 0.89223 0.90550 0.88993 0.95072 0.96468 0.92437 0.81714 0.82102 0.81330 0.81957 0.83326 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 10.24 71.98 0.74 -3.53 16 2 C 0.11 3.53 6.40 86.38 0.55 4.08 16 3 N -0.99 -40.10 2.77 -519.86 -1.44 -41.54 16 4 C 0.27 13.56 5.10 85.63 0.44 14.00 16 5 C -0.55 -30.82 9.38 25.60 0.24 -30.58 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.92 -54.28 13.29 21.45 0.28 -53.99 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 S 2.68 103.51 5.80 -56.49 -0.33 103.18 16 14 O -1.00 -48.76 16.99 -128.00 -2.17 -50.94 16 15 O -0.99 -37.25 15.44 -128.00 -1.98 -39.23 16 16 C -0.74 -21.63 9.74 66.67 0.65 -20.98 16 17 C 0.06 1.35 9.42 23.65 0.22 1.57 16 18 C -0.10 -1.98 5.87 -20.12 -0.12 -2.10 16 19 C -0.07 -1.00 9.78 22.52 0.22 -0.78 16 20 C -0.12 -1.54 9.81 22.25 0.22 -1.32 16 21 C -0.03 -0.42 6.32 22.38 0.14 -0.28 16 22 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.02 16 23 C -0.12 -2.12 9.81 22.26 0.22 -1.90 16 24 C -0.09 -1.80 9.40 22.52 0.21 -1.59 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 28 H 0.08 2.63 8.11 -2.38 -0.02 2.61 16 29 H 0.09 2.73 6.91 -2.39 -0.02 2.72 16 30 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 31 H 0.02 0.94 7.61 -2.38 -0.02 0.92 16 32 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.17 4.58 6.04 -2.91 -0.02 4.56 16 34 H 0.16 3.14 7.21 -2.91 -0.02 3.11 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.14 2.77 6.17 -2.91 -0.02 2.75 16 Total: -1.00 -71.40 355.71 1.58 -69.82 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.07 Total: 9.24 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 4.19 Total: -42.31 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -1.15 Total: -95.53 kcal Atomic # 8 Polarization: -86.01 SS G_CDS: -4.15 Total: -90.17 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.33 Total: 103.18 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -71.40 1.58 -69.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds