Wall clock time and date at job start Tue Mar 31 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47057 * 269.99711 * 3 2 1 5 5 H 1.48497 * 109.46685 * 30.00071 * 3 2 1 6 6 H 1.48497 * 109.47061 * 149.99943 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00384 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99906 * 84.99651 * 10 9 7 12 12 C 1.52997 * 109.47510 * 278.75656 * 11 10 9 13 13 C 1.52996 * 117.50105 * 116.25281 * 12 11 10 14 14 C 1.53000 * 117.50070 * 184.91750 * 12 11 10 15 15 S 1.65601 * 119.99875 * 264.99513 * 10 9 7 16 16 O 1.42107 * 106.39922 * 32.58707 * 15 10 9 17 17 O 1.42101 * 106.40017 * 165.50494 * 15 10 9 18 18 C 1.76196 * 107.21883 * 279.04909 * 15 10 9 19 19 C 1.38237 * 120.00674 * 112.76079 * 18 15 10 20 20 C 1.38221 * 120.00930 * 180.02562 * 19 18 15 21 21 C 1.38258 * 120.03155 * 359.97438 * 20 19 18 22 22 C 1.38196 * 120.00985 * 359.97438 * 21 20 19 23 23 C 1.38336 * 120.00323 * 292.48641 * 18 15 10 24 24 Cl 1.73590 * 120.01645 * 359.97438 * 23 18 15 25 25 H 0.96999 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47114 * 59.99409 * 9 7 2 27 27 H 1.09004 * 109.46658 * 299.99625 * 9 7 2 28 28 H 1.09005 * 109.46974 * 158.75630 * 11 10 9 29 29 H 1.08996 * 109.47364 * 38.76281 * 11 10 9 30 30 H 1.09005 * 115.54675 * 330.58529 * 12 11 10 31 31 H 1.08996 * 117.50085 * 215.00375 * 13 12 11 32 32 H 1.09004 * 117.49671 * 0.03119 * 13 12 11 33 33 H 1.08994 * 117.50084 * 359.97045 * 14 12 11 34 34 H 1.08996 * 117.49845 * 145.00017 * 14 12 11 35 35 H 1.07995 * 119.99477 * 0.02562 * 19 18 15 36 36 H 1.08006 * 119.98328 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99657 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00085 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7632 -4.0975 1.2644 12 6 3.9214 -3.1926 1.6895 13 6 3.7615 -2.4051 2.9914 14 6 4.7168 -3.5996 2.9314 15 16 2.6461 -4.3233 -1.4282 16 8 2.6248 -3.2966 -2.4105 17 8 3.7983 -5.1059 -1.1467 18 6 1.3695 -5.4563 -1.8650 19 6 0.5840 -5.2176 -2.9772 20 6 -0.4178 -6.1062 -3.3196 21 6 -0.6348 -7.2344 -2.5505 22 6 0.1505 -7.4746 -1.4390 23 6 1.1567 -6.5879 -1.0982 24 17 2.1477 -6.8924 0.2941 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 3.1275 -5.1164 1.1332 29 1 1.9906 -4.0841 2.0331 30 1 4.4676 -2.7148 0.8761 31 1 4.2025 -1.4093 3.0347 32 1 2.8313 -2.5320 3.5454 33 1 4.4148 -4.5118 3.4460 34 1 5.7864 -3.3896 2.9352 35 1 0.7532 -4.3368 -3.5787 36 1 -1.0315 -5.9190 -4.1885 37 1 -1.4180 -7.9281 -2.8183 38 1 -0.0188 -8.3562 -0.8385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069623645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:42 Heat of formation + Delta-G solvation = -17.288866 kcal Electronic energy + Delta-G solvation = -24615.891521 eV Core-core repulsion = 20998.649792 eV Total energy + Delta-G solvation = -3617.241730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.27131 -37.47533 -36.82711 -36.38277 -35.19958 -34.68078 -32.33821 -31.39937 -30.86188 -27.82370 -25.39061 -23.37469 -22.90618 -22.27552 -21.83911 -20.24824 -18.79905 -17.69354 -16.85774 -16.55178 -16.15637 -15.89806 -15.32451 -14.75257 -14.61648 -14.32941 -13.98615 -13.92708 -13.66092 -13.16836 -12.71860 -12.48183 -12.37532 -11.91477 -11.70769 -11.62623 -11.50700 -11.42538 -11.18345 -11.14322 -11.04203 -10.88066 -10.74860 -10.52068 -10.36184 -10.06071 -9.79458 -9.64714 -9.48560 -9.20871 -8.91087 -8.39641 -8.09479 -6.01951 -4.03437 0.60189 0.98948 1.05678 1.88266 3.25151 3.35141 3.41062 3.44442 3.66674 4.25363 4.39063 4.48473 4.50100 4.70130 4.92645 5.05193 5.23735 5.31494 5.34973 5.37955 5.42311 5.51176 5.65366 5.79043 5.85314 5.96723 6.00185 6.03714 6.14767 6.24073 6.42522 6.54373 6.58311 6.61287 6.83455 7.21959 7.38463 7.59846 7.96444 8.24460 8.98383 9.60460 11.07156 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.005859 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.522171 B = 4778.017313 C = 6067.662473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.258 3.742 10 N -0.973 5.973 11 C 0.158 3.842 12 C -0.145 4.145 13 C -0.162 4.162 14 C -0.193 4.193 15 S 2.678 3.322 16 O -0.939 6.939 17 O -0.960 6.960 18 C -0.668 4.668 19 C -0.008 4.008 20 C -0.138 4.138 21 C -0.063 4.063 22 C -0.135 4.135 23 C 0.052 3.948 24 Cl -0.042 7.042 25 H 0.262 0.738 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -14.843 -0.523 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.136 3.864 10 N -0.812 5.812 11 C 0.031 3.969 12 C -0.165 4.165 13 C -0.199 4.199 14 C -0.231 4.231 15 S 2.764 3.236 16 O -0.929 6.929 17 O -0.950 6.950 18 C -0.751 4.751 19 C -0.027 4.027 20 C -0.156 4.156 21 C -0.081 4.081 22 C -0.154 4.154 23 C 0.024 3.976 24 Cl -0.013 7.013 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.086 -14.626 -0.881 14.652 hybrid contribution -0.330 0.646 0.195 0.751 sum -0.244 -13.980 -0.687 13.999 Atomic orbital electron populations 1.69917 1.05935 1.26886 1.51171 1.24889 0.94810 0.99061 0.95250 0.86573 0.79836 0.83269 0.78232 1.20567 1.21347 1.19812 1.21442 0.93694 0.90127 1.49912 0.91811 1.19104 0.86768 0.82260 0.98219 1.57359 1.59528 1.44882 1.19470 1.20935 0.93991 0.95960 0.85968 1.22640 0.99681 1.02140 0.92039 1.22869 1.00485 0.95612 1.00969 1.22977 0.97514 0.99473 1.03088 1.02621 0.73808 0.73322 0.73869 1.93604 1.85932 1.54429 1.58907 1.93559 1.45080 1.71624 1.84748 1.31496 1.23590 1.14117 1.05866 1.21096 0.90872 0.98144 0.92570 1.21408 0.98582 0.94857 1.00801 1.21376 0.97170 0.96547 0.93014 1.21138 0.95595 0.99866 0.98804 1.20500 0.93160 0.94532 0.89363 1.98416 1.67933 1.95125 1.39813 0.92860 0.94874 0.94502 0.90081 0.90953 0.87706 0.89235 0.88987 0.89412 0.89383 0.82917 0.84487 0.84550 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.83 8.83 -34.44 -0.30 -14.14 16 8 H 0.06 1.73 6.89 -52.48 -0.36 1.37 16 9 C 0.26 6.28 5.12 -5.19 -0.03 6.26 16 10 N -0.97 -20.17 2.82 -115.67 -0.33 -20.49 16 11 C 0.16 2.86 5.06 -4.05 -0.02 2.84 16 12 C -0.14 -2.65 5.03 -90.62 -0.46 -3.10 16 13 C -0.16 -2.71 10.18 -26.69 -0.27 -2.98 16 14 C -0.19 -2.85 10.26 -26.69 -0.27 -3.13 16 15 S 2.68 54.22 5.02 -107.50 -0.54 53.68 16 16 O -0.94 -21.86 16.28 -57.17 -0.93 -22.79 16 17 O -0.96 -19.73 15.05 -57.17 -0.86 -20.60 16 18 C -0.67 -11.34 5.92 -39.55 -0.23 -11.58 16 19 C -0.01 -0.12 9.55 -39.59 -0.38 -0.49 16 20 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 21 C -0.06 -0.65 10.05 -39.59 -0.40 -1.05 16 22 C -0.13 -1.60 9.83 -39.55 -0.39 -1.99 16 23 C 0.05 0.79 6.30 -39.50 -0.25 0.54 16 24 Cl -0.04 -0.62 23.12 -51.86 -1.20 -1.82 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.85 7.85 -51.93 -0.41 0.44 16 27 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 28 H 0.08 1.36 4.26 -51.93 -0.22 1.14 16 29 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 30 H 0.10 2.11 7.65 -51.93 -0.40 1.71 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.15 2.27 7.33 -52.49 -0.38 1.89 16 36 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -31.84 342.82 -11.15 -43.00 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.68 Total: 1.45 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -3.49 Total: -29.22 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.41 Total: -45.48 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.79 Total: -43.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -0.54 Total: 53.68 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.20 Total: -1.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.84 -11.15 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069623645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.708 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds