Wall clock time and date at job start Tue Mar 31 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47057 * 269.99711 * 3 2 1 5 5 H 1.48497 * 109.46685 * 30.00071 * 3 2 1 6 6 H 1.48497 * 109.47061 * 149.99943 * 3 2 1 7 7 C 1.37878 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00384 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99906 * 84.99651 * 10 9 7 12 12 C 1.52997 * 109.47510 * 278.75656 * 11 10 9 13 13 C 1.52996 * 117.50105 * 116.25281 * 12 11 10 14 14 C 1.53000 * 117.50070 * 184.91750 * 12 11 10 15 15 S 1.65601 * 119.99875 * 264.99513 * 10 9 7 16 16 O 1.42107 * 106.39922 * 32.58707 * 15 10 9 17 17 O 1.42101 * 106.40017 * 165.50494 * 15 10 9 18 18 C 1.76196 * 107.21883 * 279.04909 * 15 10 9 19 19 C 1.38237 * 120.00674 * 112.76079 * 18 15 10 20 20 C 1.38221 * 120.00930 * 180.02562 * 19 18 15 21 21 C 1.38258 * 120.03155 * 359.97438 * 20 19 18 22 22 C 1.38196 * 120.00985 * 359.97438 * 21 20 19 23 23 C 1.38336 * 120.00323 * 292.48641 * 18 15 10 24 24 Cl 1.73590 * 120.01645 * 359.97438 * 23 18 15 25 25 H 0.96999 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47114 * 59.99409 * 9 7 2 27 27 H 1.09004 * 109.46658 * 299.99625 * 9 7 2 28 28 H 1.09005 * 109.46974 * 158.75630 * 11 10 9 29 29 H 1.08996 * 109.47364 * 38.76281 * 11 10 9 30 30 H 1.09005 * 115.54675 * 330.58529 * 12 11 10 31 31 H 1.08996 * 117.50085 * 215.00375 * 13 12 11 32 32 H 1.09004 * 117.49671 * 0.03119 * 13 12 11 33 33 H 1.08994 * 117.50084 * 359.97045 * 14 12 11 34 34 H 1.08996 * 117.49845 * 145.00017 * 14 12 11 35 35 H 1.07995 * 119.99477 * 0.02562 * 19 18 15 36 36 H 1.08006 * 119.98328 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99657 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00085 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7632 -4.0975 1.2644 12 6 3.9214 -3.1926 1.6895 13 6 3.7615 -2.4051 2.9914 14 6 4.7168 -3.5996 2.9314 15 16 2.6461 -4.3233 -1.4282 16 8 2.6248 -3.2966 -2.4105 17 8 3.7983 -5.1059 -1.1467 18 6 1.3695 -5.4563 -1.8650 19 6 0.5840 -5.2176 -2.9772 20 6 -0.4178 -6.1062 -3.3196 21 6 -0.6348 -7.2344 -2.5505 22 6 0.1505 -7.4746 -1.4390 23 6 1.1567 -6.5879 -1.0982 24 17 2.1477 -6.8924 0.2941 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 3.1275 -5.1164 1.1332 29 1 1.9906 -4.0841 2.0331 30 1 4.4676 -2.7148 0.8761 31 1 4.2025 -1.4093 3.0347 32 1 2.8313 -2.5320 3.5454 33 1 4.4148 -4.5118 3.4460 34 1 5.7864 -3.3896 2.9352 35 1 0.7532 -4.3368 -3.5787 36 1 -1.0315 -5.9190 -4.1885 37 1 -1.4180 -7.9281 -2.8183 38 1 -0.0188 -8.3562 -0.8385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069623645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:42 Heat of formation + Delta-G solvation = -36.809869 kcal Electronic energy + Delta-G solvation = -24616.738016 eV Core-core repulsion = 20998.649792 eV Total energy + Delta-G solvation = -3618.088224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29499 -38.92042 -38.32279 -37.65816 -36.87005 -36.33725 -34.36401 -32.44546 -31.87713 -29.67727 -27.10529 -24.54033 -24.23835 -23.82895 -23.11568 -21.68980 -20.16840 -19.13238 -18.56795 -18.33808 -17.47187 -17.31316 -16.72503 -16.30627 -15.94622 -15.77804 -15.32568 -15.01869 -14.87163 -14.75979 -14.37174 -14.18857 -13.65556 -13.47069 -13.26861 -13.13364 -12.98225 -12.90768 -12.65763 -12.60319 -12.53781 -12.45970 -12.34340 -12.19423 -11.94947 -11.60655 -11.55545 -11.20142 -10.63860 -10.53503 -10.49346 -9.96435 -9.80122 -8.14480 -6.21820 -0.67378 -0.35922 0.04899 0.78095 1.39466 1.42130 1.50753 1.97408 2.37770 2.44467 2.74879 3.05213 3.16908 3.27443 3.71124 3.84931 3.91932 4.00334 4.16648 4.19586 4.23305 4.29124 4.34786 4.55609 4.68317 4.81551 4.84182 4.87999 4.94038 5.06080 5.12685 5.20312 5.20989 5.35000 5.38373 5.47675 5.65613 5.75424 5.92945 6.17142 6.84360 7.44656 8.93896 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.005859 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.522171 B = 4778.017313 C = 6067.662473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.275 3.725 10 N -0.978 5.978 11 C 0.155 3.845 12 C -0.180 4.180 13 C -0.169 4.169 14 C -0.159 4.159 15 S 2.680 3.320 16 O -0.985 6.985 17 O -0.972 6.972 18 C -0.687 4.687 19 C -0.034 4.034 20 C -0.131 4.131 21 C -0.043 4.043 22 C -0.129 4.129 23 C 0.034 3.966 24 Cl -0.048 7.048 25 H 0.264 0.736 26 H 0.014 0.986 27 H 0.029 0.971 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.173 0.827 37 H 0.188 0.812 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -17.058 -0.179 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.152 3.848 10 N -0.816 5.816 11 C 0.030 3.970 12 C -0.200 4.200 13 C -0.206 4.206 14 C -0.196 4.196 15 S 2.773 3.227 16 O -0.975 6.975 17 O -0.962 6.962 18 C -0.776 4.776 19 C -0.053 4.053 20 C -0.149 4.149 21 C -0.060 4.060 22 C -0.148 4.148 23 C 0.005 3.995 24 Cl -0.019 7.019 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.190 0.810 37 H 0.206 0.794 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.964 -16.809 -0.505 16.844 hybrid contribution -0.062 1.182 0.013 1.184 sum -1.027 -15.626 -0.492 15.668 Atomic orbital electron populations 1.70000 1.06985 1.27694 1.52052 1.25597 0.95632 1.02048 0.95154 0.85731 0.79061 0.79911 0.78094 1.20760 1.20203 1.19197 1.21696 0.93430 0.91585 1.49364 0.92775 1.18648 0.86778 0.82651 0.96703 1.57199 1.59090 1.44686 1.20666 1.21118 0.94199 0.96517 0.85143 1.22617 1.01001 1.03894 0.92462 1.22902 1.01558 0.96168 0.99961 1.23089 0.97830 0.99273 0.99438 1.02001 0.74414 0.73259 0.73068 1.93538 1.87027 1.56777 1.60157 1.93527 1.46536 1.71420 1.84746 1.30798 1.24093 1.14548 1.08142 1.21240 0.92427 0.99200 0.92455 1.21849 0.97137 0.94151 1.01790 1.22013 0.96848 0.96103 0.91079 1.21640 0.93965 0.99863 0.99352 1.20736 0.94468 0.94891 0.89358 1.98401 1.68396 1.94983 1.40076 0.92658 0.96818 0.95330 0.88752 0.89961 0.90555 0.89891 0.88505 0.86974 0.87938 0.84190 0.80970 0.79444 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.81 5.46 84.66 0.46 1.28 16 3 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.52 -29.23 8.83 25.60 0.23 -29.00 16 8 H 0.05 3.08 6.89 -2.91 -0.02 3.06 16 9 C 0.28 14.02 5.12 85.63 0.44 14.45 16 10 N -0.98 -42.26 2.82 -519.86 -1.47 -43.73 16 11 C 0.16 5.74 5.06 86.38 0.44 6.17 16 12 C -0.18 -6.68 5.03 -10.80 -0.05 -6.73 16 13 C -0.17 -5.61 10.18 30.62 0.31 -5.30 16 14 C -0.16 -4.47 10.26 30.62 0.31 -4.15 16 15 S 2.68 113.81 5.02 -56.49 -0.28 113.53 16 16 O -0.98 -48.99 16.28 -128.00 -2.08 -51.07 16 17 O -0.97 -41.46 15.05 -128.00 -1.93 -43.39 16 18 C -0.69 -23.58 5.92 22.29 0.13 -23.45 16 19 C -0.03 -1.01 9.55 22.27 0.21 -0.80 16 20 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 21 C -0.04 -0.67 10.05 22.26 0.22 -0.45 16 22 C -0.13 -2.58 9.83 22.29 0.22 -2.36 16 23 C 0.03 0.97 6.30 22.33 0.14 1.11 16 24 Cl -0.05 -1.37 23.12 -2.72 -0.06 -1.43 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.75 7.85 -2.39 -0.02 0.73 16 27 H 0.03 1.49 8.04 -2.38 -0.02 1.47 16 28 H 0.09 3.19 4.26 -2.38 -0.01 3.18 16 29 H 0.08 2.81 7.79 -2.39 -0.02 2.79 16 30 H 0.08 3.25 7.65 -2.38 -0.02 3.23 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.10 3.09 8.03 -2.38 -0.02 3.07 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.14 4.43 7.33 -2.91 -0.02 4.41 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.29 342.82 0.85 -71.44 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.08 Total: 12.97 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 3.29 Total: -51.65 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -1.18 Total: -97.52 kcal Atomic # 8 Polarization: -90.45 SS G_CDS: -4.01 Total: -94.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 113.81 SS G_CDS: -0.28 Total: 113.53 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.06 Total: -1.43 kcal Total: -72.29 0.85 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069623645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.633 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds