Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34897 * 117.00058 * 2 1 4 4 O 1.21625 * 119.99898 * 359.97438 * 3 2 1 5 5 C 1.46475 * 120.00042 * 179.97438 * 3 2 1 6 6 C 1.36644 * 125.99294 * 179.97438 * 5 3 2 7 7 C 1.40315 * 106.69660 * 179.79041 * 6 5 3 8 8 C 1.35163 * 107.13107 * 0.37292 * 7 6 5 9 9 S 1.76195 * 125.61059 * 179.88350 * 8 7 6 10 10 O 1.42092 * 106.40345 * 336.18063 * 9 8 7 11 11 O 1.42101 * 106.40400 * 203.25771 * 9 8 7 12 12 N 1.65604 * 107.21682 * 89.72245 * 9 8 7 13 13 C 1.46491 * 120.00514 * 89.99717 * 12 9 8 14 14 C 1.50702 * 109.46957 * 94.99913 * 13 12 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.46503 * 119.99536 * 270.00096 * 12 9 8 23 23 C 1.53003 * 117.50025 * 188.74914 * 22 12 9 24 24 C 1.52999 * 117.50370 * 120.08809 * 22 12 9 25 25 O 1.33917 * 108.77878 * 359.62456 * 8 7 6 26 26 H 1.08994 * 109.47236 * 300.00227 * 1 2 3 27 27 H 1.09005 * 109.46864 * 60.00687 * 1 2 3 28 28 H 1.09006 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.07994 * 126.64994 * 0.02562 * 6 5 3 30 30 H 1.08000 * 126.43432 * 180.23372 * 7 6 5 31 31 H 1.09004 * 109.47166 * 335.00179 * 13 12 9 32 32 H 1.08994 * 109.47507 * 214.99885 * 13 12 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 34 34 H 1.08999 * 115.54905 * 334.41450 * 22 12 9 35 35 H 1.09004 * 117.49658 * 359.97438 * 23 22 12 36 36 H 1.08995 * 117.50222 * 145.01621 * 23 22 12 37 37 H 1.08998 * 117.50036 * 214.98132 * 24 22 12 38 38 H 1.09002 * 117.49525 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2712 2.4247 0.0001 7 6 5.6180 2.0309 0.0059 8 6 5.6377 0.6795 0.0011 9 16 7.0850 -0.3255 0.0023 10 8 8.1276 0.4719 -0.5420 11 8 6.7021 -1.5811 -0.5418 12 7 7.4868 -0.6044 1.5844 13 6 6.9409 -1.7698 2.2844 14 6 7.9258 -2.9079 2.2087 15 1 8.8647 -2.7762 1.6914 16 6 7.6310 -4.1155 2.8054 17 7 6.4879 -4.2758 3.4357 18 14 8.8551 -5.5238 2.7182 19 1 10.1311 -5.1107 3.3558 20 1 8.3038 -6.7037 3.4319 21 1 9.1033 -5.8768 1.2973 22 6 8.3881 0.3144 2.2841 23 6 8.8842 -0.1014 3.6705 24 6 7.8503 1.0188 3.5313 25 8 4.3762 0.2299 0.0011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8955 3.4372 -0.0003 30 1 6.4774 2.6850 0.0107 31 1 6.0033 -2.0689 1.8157 32 1 6.7600 -1.5147 3.3285 33 1 6.2804 -5.1255 3.8551 34 1 9.0772 0.8715 1.6493 35 1 8.5395 -1.0585 4.0621 36 1 9.8994 0.1823 3.9478 37 1 8.1858 2.0391 3.7172 38 1 6.8257 0.7989 3.8311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069707841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = -96.342809 kcal Electronic energy + Delta-G solvation = -26479.823870 eV Core-core repulsion = 22418.444940 eV Total energy + Delta-G solvation = -4061.378931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90243 -40.44920 -37.69305 -36.93992 -36.82907 -35.49073 -33.42665 -33.40813 -31.84933 -30.85383 -27.99064 -27.14138 -24.37500 -23.16595 -22.34589 -21.90884 -21.07989 -20.80152 -19.26931 -18.42391 -17.81353 -17.35578 -17.11371 -16.85971 -16.34836 -15.99025 -15.62198 -14.73203 -14.47765 -14.35109 -14.10096 -13.86237 -13.53947 -13.47038 -13.27716 -12.65443 -12.45613 -12.42070 -11.97040 -11.80699 -11.61417 -11.38580 -11.28823 -11.17827 -11.12090 -11.11652 -10.89129 -10.78252 -10.52871 -10.38448 -10.13846 -9.86606 -9.60795 -9.35217 -8.48155 -8.07804 -6.10128 -4.14670 0.26509 0.57840 1.69500 2.03145 2.55965 2.84341 3.32252 3.35182 3.36807 3.41913 3.97391 4.29596 4.42495 4.44791 4.52337 4.78525 4.84577 4.94242 5.09081 5.17493 5.23225 5.28988 5.31358 5.35959 5.38666 5.46155 5.63019 5.88023 5.89633 6.02474 6.36174 6.39524 6.55034 6.82103 7.09221 7.25266 7.28794 7.45767 7.86290 8.11393 8.87442 9.50398 10.98392 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.004392 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.472910 B = 6373.315136 C = 7407.311207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.555 3.445 4 O -0.483 6.483 5 C -0.031 4.031 6 C -0.125 4.125 7 C -0.115 4.115 8 C -0.522 4.522 9 S 2.700 3.300 10 O -0.947 6.947 11 O -0.913 6.913 12 N -0.941 5.941 13 C 0.249 3.751 14 C -0.527 4.527 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.077 3.923 23 C -0.159 4.159 24 C -0.206 4.206 25 O -0.086 6.086 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 12.925 -3.185 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.399 3.601 4 O -0.373 6.373 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.136 4.136 8 C -0.650 4.650 9 S 2.780 3.220 10 O -0.937 6.937 11 O -0.903 6.903 12 N -0.780 5.780 13 C 0.128 3.872 14 C -0.566 4.566 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.030 4.030 23 C -0.199 4.199 24 C -0.246 4.246 25 O 0.023 5.977 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.191 0.809 30 H 0.195 0.805 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.815 12.470 -3.858 14.290 hybrid contribution -0.212 -0.114 0.380 0.450 sum -6.027 12.356 -3.478 14.181 Atomic orbital electron populations 1.23427 0.74931 1.04580 1.02812 1.86737 1.24303 1.31111 1.83374 1.19141 0.85319 0.82407 0.73243 1.90945 1.64318 1.35898 1.46093 1.21353 0.88806 0.87369 1.10973 1.22118 0.92078 0.99051 1.01295 1.21905 0.98560 0.93434 0.99656 1.37410 1.01768 1.10328 1.15470 1.02610 0.72409 0.73218 0.73730 1.93574 1.50489 1.72347 1.77285 1.93654 1.82707 1.37985 1.75979 1.57156 1.56036 1.33856 1.30935 1.19287 0.94695 0.79881 0.93364 1.21356 1.03766 0.96244 1.35236 0.91816 1.24915 0.95525 0.98422 0.94966 1.69914 1.22330 1.25611 1.35405 0.86560 0.81097 0.81312 0.78526 1.20102 1.21238 1.19926 1.21415 0.96376 0.96007 0.89246 1.23305 0.98313 1.00576 0.97659 1.23425 1.00183 0.97225 1.03735 1.84360 1.13306 1.32709 1.67348 0.91364 0.91455 0.87268 0.80908 0.80505 0.93756 0.93969 0.92529 0.85026 0.85922 0.88842 0.88890 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.69 10.58 -42.47 -0.45 -5.14 16 3 C 0.55 8.04 7.93 34.05 0.27 8.31 16 4 O -0.48 -7.12 16.66 -19.36 -0.32 -7.44 16 5 C -0.03 -0.47 7.18 -36.84 -0.26 -0.73 16 6 C -0.13 -1.62 10.62 -39.38 -0.42 -2.04 16 7 C -0.12 -1.55 10.59 -39.90 -0.42 -1.98 16 8 C -0.52 -8.78 7.35 29.64 0.22 -8.56 16 9 S 2.70 51.78 5.80 -107.50 -0.62 51.15 16 10 O -0.95 -17.68 16.61 -57.17 -0.95 -18.63 16 11 O -0.91 -21.21 16.99 -57.26 -0.97 -22.18 16 12 N -0.94 -18.53 3.11 -108.58 -0.34 -18.87 16 13 C 0.25 5.93 4.38 -5.20 -0.02 5.90 16 14 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 C 0.08 1.26 6.39 -67.93 -0.43 0.83 16 23 C -0.16 -2.52 9.63 -26.69 -0.26 -2.78 16 24 C -0.21 -2.89 10.12 -26.69 -0.27 -3.16 16 25 O -0.09 -1.53 10.67 4.68 0.05 -1.48 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.04 1.15 7.61 -51.93 -0.40 0.75 16 32 H 0.04 1.01 6.56 -51.93 -0.34 0.67 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.13 1.90 7.37 -51.93 -0.38 1.52 16 35 H 0.12 2.33 6.15 -51.93 -0.32 2.01 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -32.76 352.19 -7.87 -40.63 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.36 Total: 0.46 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.93 Total: -15.40 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.40 Total: -43.35 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.64 Total: -54.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.62 Total: 51.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.76 -7.87 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069707841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.709 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds