Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34897 * 117.00058 * 2 1 4 4 O 1.21625 * 119.99898 * 359.97438 * 3 2 1 5 5 C 1.46475 * 120.00042 * 179.97438 * 3 2 1 6 6 C 1.36644 * 125.99294 * 179.97438 * 5 3 2 7 7 C 1.40315 * 106.69660 * 179.79041 * 6 5 3 8 8 C 1.35163 * 107.13107 * 0.37292 * 7 6 5 9 9 S 1.76195 * 125.61059 * 179.88350 * 8 7 6 10 10 O 1.42092 * 106.40345 * 336.18063 * 9 8 7 11 11 O 1.42101 * 106.40400 * 203.25771 * 9 8 7 12 12 N 1.65604 * 107.21682 * 89.72245 * 9 8 7 13 13 C 1.46491 * 120.00514 * 89.99717 * 12 9 8 14 14 C 1.50702 * 109.46957 * 94.99913 * 13 12 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.46503 * 119.99536 * 270.00096 * 12 9 8 23 23 C 1.53003 * 117.50025 * 188.74914 * 22 12 9 24 24 C 1.52999 * 117.50370 * 120.08809 * 22 12 9 25 25 O 1.33917 * 108.77878 * 359.62456 * 8 7 6 26 26 H 1.08994 * 109.47236 * 300.00227 * 1 2 3 27 27 H 1.09005 * 109.46864 * 60.00687 * 1 2 3 28 28 H 1.09006 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.07994 * 126.64994 * 0.02562 * 6 5 3 30 30 H 1.08000 * 126.43432 * 180.23372 * 7 6 5 31 31 H 1.09004 * 109.47166 * 335.00179 * 13 12 9 32 32 H 1.08994 * 109.47507 * 214.99885 * 13 12 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 34 34 H 1.08999 * 115.54905 * 334.41450 * 22 12 9 35 35 H 1.09004 * 117.49658 * 359.97438 * 23 22 12 36 36 H 1.08995 * 117.50222 * 145.01621 * 23 22 12 37 37 H 1.08998 * 117.50036 * 214.98132 * 24 22 12 38 38 H 1.09002 * 117.49525 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2712 2.4247 0.0001 7 6 5.6180 2.0309 0.0059 8 6 5.6377 0.6795 0.0011 9 16 7.0850 -0.3255 0.0023 10 8 8.1276 0.4719 -0.5420 11 8 6.7021 -1.5811 -0.5418 12 7 7.4868 -0.6044 1.5844 13 6 6.9409 -1.7698 2.2844 14 6 7.9258 -2.9079 2.2087 15 1 8.8647 -2.7762 1.6914 16 6 7.6310 -4.1155 2.8054 17 7 6.4879 -4.2758 3.4357 18 14 8.8551 -5.5238 2.7182 19 1 10.1311 -5.1107 3.3558 20 1 8.3038 -6.7037 3.4319 21 1 9.1033 -5.8768 1.2973 22 6 8.3881 0.3144 2.2841 23 6 8.8842 -0.1014 3.6705 24 6 7.8503 1.0188 3.5313 25 8 4.3762 0.2299 0.0011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8955 3.4372 -0.0003 30 1 6.4774 2.6850 0.0107 31 1 6.0033 -2.0689 1.8157 32 1 6.7600 -1.5147 3.3285 33 1 6.2804 -5.1255 3.8551 34 1 9.0772 0.8715 1.6493 35 1 8.5395 -1.0585 4.0621 36 1 9.8994 0.1823 3.9478 37 1 8.1858 2.0391 3.7172 38 1 6.8257 0.7989 3.8311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069707841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = -119.111714 kcal Electronic energy + Delta-G solvation = -26480.811204 eV Core-core repulsion = 22418.444940 eV Total energy + Delta-G solvation = -4062.366264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.08745 -41.50995 -39.07554 -38.50395 -37.88978 -37.10137 -35.23361 -34.57538 -33.58642 -31.98711 -29.06472 -28.83079 -25.48756 -25.04437 -23.49710 -23.09154 -22.36322 -22.05888 -20.52439 -19.74350 -19.21959 -18.71353 -18.39601 -18.17705 -18.03667 -17.32399 -17.05819 -16.42352 -15.91910 -15.52507 -15.45823 -15.06601 -14.53862 -14.48030 -14.46039 -14.34350 -14.07777 -13.54916 -13.39584 -13.24270 -13.23917 -12.98232 -12.86365 -12.77845 -12.49618 -12.46532 -12.25056 -12.13284 -12.02816 -11.99095 -11.49980 -11.42780 -11.10842 -10.59289 -10.53297 -9.62164 -8.17442 -6.28589 -1.04210 -0.77004 0.58291 0.98926 1.42926 1.46468 1.46598 1.53036 1.69468 1.94876 2.43040 2.52846 3.06891 3.13982 3.24009 3.47897 3.53212 3.94106 3.99269 4.05983 4.11930 4.16829 4.23753 4.25994 4.32490 4.45515 4.62760 4.87224 4.89860 4.93884 5.03788 5.15388 5.26090 5.29133 5.41251 5.52341 5.73564 5.87573 6.08981 6.23236 6.78769 7.39625 8.90417 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.004392 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.472910 B = 6373.315136 C = 7407.311207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.556 3.444 4 O -0.488 6.488 5 C -0.048 4.048 6 C -0.108 4.108 7 C -0.086 4.086 8 C -0.555 4.555 9 S 2.720 3.280 10 O -0.943 6.943 11 O -0.969 6.969 12 N -0.949 5.949 13 C 0.267 3.733 14 C -0.536 4.536 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.926 5.926 18 Si 0.955 3.045 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.277 1.277 22 C 0.054 3.946 23 C -0.170 4.170 24 C -0.178 4.178 25 O -0.119 6.119 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.211 0.789 30 H 0.215 0.785 31 H 0.013 0.987 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 15.430 -3.084 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.378 6.378 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.107 4.107 8 C -0.686 4.686 9 S 2.805 3.195 10 O -0.933 6.933 11 O -0.959 6.959 12 N -0.788 5.788 13 C 0.144 3.856 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.780 3.220 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.052 4.052 23 C -0.209 4.209 24 C -0.218 4.218 25 O -0.013 6.013 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.228 0.772 30 H 0.232 0.768 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.118 14.968 -3.747 16.257 hybrid contribution -0.535 -0.775 0.324 0.995 sum -5.652 14.194 -3.423 15.657 Atomic orbital electron populations 1.23799 0.72537 1.06471 1.03785 1.86725 1.26822 1.31025 1.83058 1.19103 0.85174 0.82583 0.73155 1.90930 1.64328 1.35927 1.46581 1.21892 0.89300 0.87761 1.11209 1.22603 0.91267 0.99866 0.99034 1.22444 1.00123 0.92097 0.96016 1.36705 1.01048 1.11385 1.19435 1.01525 0.72521 0.72454 0.73030 1.93562 1.50811 1.71874 1.77069 1.93584 1.83764 1.41394 1.77148 1.56966 1.57100 1.33766 1.30931 1.18742 0.92998 0.80942 0.92877 1.21666 1.03973 0.97331 1.34578 0.92237 1.25710 0.97169 1.00899 0.94781 1.70020 1.23937 1.26236 1.36428 0.85653 0.79564 0.78518 0.78270 1.18524 1.20643 1.20269 1.21858 0.97006 0.96344 0.89963 1.23276 1.00433 0.99838 0.97387 1.23485 0.98996 0.98564 1.00722 1.84318 1.13938 1.34283 1.68780 0.90573 0.90291 0.85063 0.77205 0.76784 0.96919 0.94646 0.92470 0.82620 0.89839 0.85933 0.84716 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -9.96 10.58 -56.74 -0.60 -10.56 16 3 C 0.56 15.75 7.93 69.97 0.55 16.30 16 4 O -0.49 -13.62 16.66 19.43 0.32 -13.30 16 5 C -0.05 -1.42 7.18 24.04 0.17 -1.25 16 6 C -0.11 -2.46 10.62 22.40 0.24 -2.23 16 7 C -0.09 -2.08 10.59 22.07 0.23 -1.85 16 8 C -0.55 -18.44 7.35 67.11 0.49 -17.94 16 9 S 2.72 105.73 5.80 -56.49 -0.33 105.40 16 10 O -0.94 -34.15 16.61 -128.00 -2.13 -36.27 16 11 O -0.97 -47.35 16.99 -127.92 -2.17 -49.52 16 12 N -0.95 -37.96 3.11 -497.43 -1.54 -39.50 16 13 C 0.27 13.34 4.38 85.64 0.38 13.71 16 14 C -0.54 -29.35 8.73 25.60 0.22 -29.13 16 15 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 16 C 0.01 0.77 5.46 84.66 0.46 1.23 16 17 N -0.93 -54.00 13.29 21.45 0.28 -53.72 16 18 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 C 0.05 1.70 6.39 44.99 0.29 1.99 16 23 C -0.17 -5.21 9.63 30.62 0.29 -4.91 16 24 C -0.18 -4.58 10.12 30.62 0.31 -4.27 16 25 O -0.12 -4.37 10.67 -4.83 -0.05 -4.42 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.01 0.71 7.61 -2.38 -0.02 0.70 16 32 H 0.04 1.79 6.56 -2.39 -0.02 1.78 16 33 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 34 H 0.16 4.07 7.37 -2.39 -0.02 4.05 16 35 H 0.08 3.26 6.15 -2.38 -0.01 3.25 16 36 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 Total: -1.00 -74.08 352.19 1.75 -72.32 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.10 Total: 10.37 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.84 Total: -26.70 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.26 Total: -93.22 kcal Atomic # 8 Polarization: -109.46 SS G_CDS: -4.63 Total: -114.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -0.33 Total: 105.40 kcal Total: -74.08 1.75 -72.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069707841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.788 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds