Wall clock time and date at job start Tue Mar 31 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47002 * 2 1 4 4 C 1.46500 * 120.00108 * 274.99761 * 3 2 1 5 5 C 1.50696 * 109.47219 * 274.99962 * 4 3 2 6 6 H 1.07996 * 119.99888 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99995 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00339 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47213 * 89.99422 * 9 7 5 11 11 H 1.48491 * 109.47439 * 209.99869 * 9 7 5 12 12 H 1.48495 * 109.46488 * 330.00053 * 9 7 5 13 13 S 1.65609 * 120.00042 * 94.99964 * 3 2 1 14 14 O 1.42098 * 106.40200 * 156.45987 * 13 3 2 15 15 O 1.42098 * 106.40117 * 23.53969 * 13 3 2 16 16 C 1.76198 * 107.21661 * 269.99926 * 13 3 2 17 17 C 1.32572 * 120.00011 * 114.99854 * 16 13 3 18 18 C 1.47794 * 120.00316 * 179.97438 * 17 16 13 19 19 C 1.39549 * 120.14643 * 0.02562 * 18 17 16 20 20 C 1.37953 * 119.86859 * 179.97438 * 19 18 17 21 21 C 1.38379 * 120.16909 * 0.02562 * 20 19 18 22 22 C 1.38295 * 120.30045 * 0.02562 * 21 20 19 23 23 C 1.38124 * 120.12754 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.08139 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47485 * 299.99791 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99941 * 1 2 3 28 28 H 1.08993 * 109.47232 * 240.00064 * 2 1 3 29 29 H 1.09004 * 109.46902 * 119.99828 * 2 1 3 30 30 H 1.09002 * 109.47017 * 35.00102 * 4 3 2 31 31 H 1.09005 * 109.47315 * 154.99629 * 4 3 2 32 32 H 0.97009 * 120.00331 * 180.02562 * 8 7 5 33 33 H 1.07998 * 120.00375 * 294.99857 * 16 13 3 34 34 H 1.08007 * 120.00154 * 0.02562 * 17 16 13 35 35 H 1.07997 * 120.06506 * 359.95035 * 19 18 17 36 36 H 1.07994 * 119.91360 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.84517 * 180.28139 * 21 20 19 38 38 H 1.08001 * 119.93160 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8822 6 1 4.1724 1.1118 -1.3835 7 6 3.8525 2.3606 -3.0847 8 7 3.0272 3.1847 -3.6924 9 14 5.5090 1.9637 -3.8517 10 1 5.3731 0.7803 -4.7385 11 1 5.9778 3.1268 -4.6468 12 1 6.4927 1.6682 -2.7793 13 16 2.4121 2.1203 1.4288 14 8 3.3283 3.1571 1.1050 15 8 2.7095 1.0800 2.3500 16 6 0.9554 2.9118 2.0253 17 6 0.3949 2.5041 3.1554 18 6 -0.8267 3.1684 3.6562 19 6 -1.3930 4.2249 2.9417 20 6 -2.5336 4.8405 3.4141 21 6 -3.1165 4.4133 4.5942 22 6 -2.5605 3.3676 5.3085 23 6 -1.4187 2.7424 4.8468 24 17 -0.7223 1.4296 5.7440 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0921 3.1803 -1.0756 32 1 3.2787 3.5868 -4.5387 33 1 0.5191 3.7292 1.4705 34 1 0.8314 1.6869 3.7106 35 1 -0.9390 4.5601 2.0209 36 1 -2.9727 5.6579 2.8615 37 1 -4.0119 4.8960 4.9569 38 1 -3.0202 3.0394 6.2290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:16 Heat of formation + Delta-G solvation = -37.574423 kcal Electronic energy + Delta-G solvation = -23388.084214 eV Core-core repulsion = 19769.962837 eV Total energy + Delta-G solvation = -3618.121377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72946 -36.77199 -36.64831 -36.05777 -35.20109 -34.64875 -32.66305 -31.14879 -30.01960 -29.84629 -26.60836 -24.26938 -23.12990 -22.91465 -21.74867 -20.53598 -18.12935 -17.77616 -17.02924 -16.54736 -16.28395 -15.82261 -15.54387 -15.13420 -14.50329 -14.21656 -14.15857 -14.01589 -13.74270 -13.32104 -12.97527 -12.67464 -12.15767 -12.09324 -12.01858 -11.88941 -11.68073 -11.56348 -11.45412 -11.34059 -11.16133 -11.06099 -10.95291 -10.86769 -10.53011 -10.43255 -10.35284 -9.96302 -9.73870 -9.22339 -8.77263 -8.43566 -8.07401 -6.05684 -4.09348 0.20851 0.83774 1.03250 1.78241 1.88463 3.32877 3.34657 3.39388 3.45423 3.69150 4.15825 4.34973 4.44007 4.49031 4.56548 4.87671 4.91259 4.95249 5.18461 5.23996 5.29378 5.42541 5.51904 5.68178 5.71326 5.73993 5.82469 5.95942 6.02120 6.02594 6.28957 6.31380 6.40612 6.58959 6.64245 7.22674 7.39178 7.60234 7.91998 8.20742 8.93074 9.55808 11.02979 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.003311 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.338064 B = 8454.105103 C = 8920.737492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.980 5.980 4 C 0.254 3.746 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.674 3.326 14 O -0.941 6.941 15 O -0.979 6.979 16 C -0.723 4.723 17 C 0.020 3.980 18 C -0.072 4.072 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.016 4.016 24 Cl -0.058 7.058 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.263 0.737 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 -0.187 15.846 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 N -0.820 5.820 4 C 0.133 3.867 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.763 3.237 14 O -0.931 6.931 15 O -0.969 6.969 16 C -0.826 4.826 17 C 0.000 4.000 18 C -0.074 4.074 19 C -0.100 4.100 20 C -0.136 4.136 21 C -0.115 4.115 22 C -0.134 4.134 23 C -0.043 4.043 24 Cl -0.029 7.029 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.750 -0.165 16.146 21.208 hybrid contribution 0.021 0.127 -0.542 0.557 sum -13.729 -0.037 15.604 20.784 Atomic orbital electron populations 1.22263 0.97319 1.01587 1.02035 1.21196 0.93023 0.82947 1.03822 1.57410 1.81209 1.21218 1.22138 1.19117 0.97600 0.91273 0.78740 1.21490 1.02032 1.27707 1.05497 0.92011 1.24923 0.97387 0.94799 0.96884 1.69918 1.36155 1.30326 1.17165 0.86510 0.84026 0.77812 0.79214 1.20642 1.21089 1.19642 1.02449 0.74530 0.73841 0.72926 1.93627 1.58675 1.57662 1.83148 1.93495 1.83373 1.56658 1.63396 1.34595 1.25169 1.15423 1.07413 1.21973 0.90155 0.94640 0.93187 1.19093 0.96481 0.97589 0.94208 1.21501 0.95149 0.93761 0.99541 1.21273 0.95718 1.00184 0.96428 1.21273 0.99712 0.95850 0.94692 1.21034 0.94741 0.96645 1.01001 1.21163 0.96237 0.93054 0.93859 1.98393 1.83933 1.46623 1.73909 0.92080 0.93478 0.91857 0.89396 0.90291 0.94399 0.94305 0.92705 0.82237 0.83560 0.84147 0.84775 0.84764 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.12 1.98 6.40 -4.04 -0.03 1.96 16 3 N -0.98 -19.94 2.77 -115.67 -0.32 -20.26 16 4 C 0.25 6.23 5.10 -5.20 -0.03 6.20 16 5 C -0.53 -14.62 9.38 -34.44 -0.32 -14.94 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.67 52.89 5.80 -107.50 -0.62 52.27 16 14 O -0.94 -22.52 16.99 -57.17 -0.97 -23.49 16 15 O -0.98 -19.69 15.44 -57.17 -0.88 -20.57 16 16 C -0.72 -11.36 9.74 28.83 0.28 -11.08 16 17 C 0.02 0.29 9.02 -37.58 -0.34 -0.05 16 18 C -0.07 -0.89 5.87 -104.98 -0.62 -1.50 16 19 C -0.08 -0.89 9.40 -39.20 -0.37 -1.26 16 20 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 21 C -0.10 -0.73 10.04 -39.51 -0.40 -1.13 16 22 C -0.12 -1.00 9.82 -39.60 -0.39 -1.38 16 23 C -0.02 -0.18 6.35 -39.11 -0.25 -0.43 16 24 Cl -0.06 -0.63 27.42 -51.86 -1.42 -2.06 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 29 H 0.08 1.26 6.91 -51.93 -0.36 0.91 16 30 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.16 2.26 6.04 -52.49 -0.32 1.94 16 34 H 0.15 2.10 6.14 -52.48 -0.32 1.77 16 35 H 0.14 1.45 6.17 -52.49 -0.32 1.13 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -32.88 353.22 -10.39 -43.27 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.64 Total: -0.60 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.57 Total: -25.44 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.42 Total: -45.39 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.85 Total: -44.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.62 Total: 52.27 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.42 Total: -2.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.88 -10.39 -43.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.693 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds