Wall clock time and date at job start Tue Mar 31 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47002 * 2 1 4 4 C 1.46500 * 120.00108 * 274.99761 * 3 2 1 5 5 C 1.50696 * 109.47219 * 274.99962 * 4 3 2 6 6 H 1.07996 * 119.99888 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99995 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00339 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47213 * 89.99422 * 9 7 5 11 11 H 1.48491 * 109.47439 * 209.99869 * 9 7 5 12 12 H 1.48495 * 109.46488 * 330.00053 * 9 7 5 13 13 S 1.65609 * 120.00042 * 94.99964 * 3 2 1 14 14 O 1.42098 * 106.40200 * 156.45987 * 13 3 2 15 15 O 1.42098 * 106.40117 * 23.53969 * 13 3 2 16 16 C 1.76198 * 107.21661 * 269.99926 * 13 3 2 17 17 C 1.32572 * 120.00011 * 114.99854 * 16 13 3 18 18 C 1.47794 * 120.00316 * 179.97438 * 17 16 13 19 19 C 1.39549 * 120.14643 * 0.02562 * 18 17 16 20 20 C 1.37953 * 119.86859 * 179.97438 * 19 18 17 21 21 C 1.38379 * 120.16909 * 0.02562 * 20 19 18 22 22 C 1.38295 * 120.30045 * 0.02562 * 21 20 19 23 23 C 1.38124 * 120.12754 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.08139 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47485 * 299.99791 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99941 * 1 2 3 28 28 H 1.08993 * 109.47232 * 240.00064 * 2 1 3 29 29 H 1.09004 * 109.46902 * 119.99828 * 2 1 3 30 30 H 1.09002 * 109.47017 * 35.00102 * 4 3 2 31 31 H 1.09005 * 109.47315 * 154.99629 * 4 3 2 32 32 H 0.97009 * 120.00331 * 180.02562 * 8 7 5 33 33 H 1.07998 * 120.00375 * 294.99857 * 16 13 3 34 34 H 1.08007 * 120.00154 * 0.02562 * 17 16 13 35 35 H 1.07997 * 120.06506 * 359.95035 * 19 18 17 36 36 H 1.07994 * 119.91360 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.84517 * 180.28139 * 21 20 19 38 38 H 1.08001 * 119.93160 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8822 6 1 4.1724 1.1118 -1.3835 7 6 3.8525 2.3606 -3.0847 8 7 3.0272 3.1847 -3.6924 9 14 5.5090 1.9637 -3.8517 10 1 5.3731 0.7803 -4.7385 11 1 5.9778 3.1268 -4.6468 12 1 6.4927 1.6682 -2.7793 13 16 2.4121 2.1203 1.4288 14 8 3.3283 3.1571 1.1050 15 8 2.7095 1.0800 2.3500 16 6 0.9554 2.9118 2.0253 17 6 0.3949 2.5041 3.1554 18 6 -0.8267 3.1684 3.6562 19 6 -1.3930 4.2249 2.9417 20 6 -2.5336 4.8405 3.4141 21 6 -3.1165 4.4133 4.5942 22 6 -2.5605 3.3676 5.3085 23 6 -1.4187 2.7424 4.8468 24 17 -0.7223 1.4296 5.7440 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8097 -1.9453 31 1 2.0921 3.1803 -1.0756 32 1 3.2787 3.5868 -4.5387 33 1 0.5191 3.7292 1.4705 34 1 0.8314 1.6869 3.7106 35 1 -0.9390 4.5601 2.0209 36 1 -2.9727 5.6579 2.8615 37 1 -4.0119 4.8960 4.9569 38 1 -3.0202 3.0394 6.2290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071185149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:16 Heat of formation + Delta-G solvation = -57.889170 kcal Electronic energy + Delta-G solvation = -23388.965128 eV Core-core repulsion = 19769.962837 eV Total energy + Delta-G solvation = -3619.002291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50126 -38.28955 -37.69084 -37.58512 -36.87520 -35.69116 -34.70328 -31.86926 -31.54001 -30.78875 -28.50244 -25.21933 -24.91994 -23.70995 -23.23715 -21.58201 -19.64593 -18.95410 -18.48420 -18.21535 -17.77695 -17.23795 -16.59953 -16.36331 -16.09745 -15.51263 -14.95983 -14.92682 -14.83069 -14.73136 -14.65122 -13.88549 -13.76284 -13.60624 -13.36137 -13.16101 -13.01729 -12.86969 -12.74897 -12.72093 -12.68806 -12.41667 -12.26574 -12.16846 -12.08431 -11.98289 -11.76406 -11.68136 -11.54295 -10.57193 -9.97098 -9.80817 -9.62962 -8.18737 -6.29970 -0.78412 -0.47135 0.12421 0.89410 0.97860 1.40152 1.42603 1.53258 2.13051 2.42932 2.60702 2.77470 3.12462 3.32335 3.49186 3.66051 3.81599 4.00155 4.10964 4.19603 4.26142 4.44261 4.47266 4.52028 4.67981 4.69943 4.78621 4.90938 5.03331 5.14395 5.15374 5.19261 5.33176 5.35941 5.40443 5.52696 5.70917 5.72885 5.94800 6.12634 6.77933 7.38513 8.88928 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.003311 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.338064 B = 8454.105103 C = 8920.737492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.987 5.987 4 C 0.269 3.731 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.275 1.275 13 S 2.679 3.321 14 O -0.994 6.994 15 O -0.990 6.990 16 C -0.735 4.735 17 C 0.047 3.953 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.079 4.079 22 C -0.116 4.116 23 C -0.024 4.024 24 Cl -0.065 7.065 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.173 0.827 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 -0.003 17.154 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.826 5.826 4 C 0.146 3.854 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.200 1.200 13 S 2.774 3.226 14 O -0.984 6.984 15 O -0.980 6.980 16 C -0.844 4.844 17 C 0.027 3.973 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.096 4.096 22 C -0.134 4.134 23 C -0.051 4.051 24 Cl -0.036 7.036 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.190 0.810 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.098 -0.031 17.437 23.732 hybrid contribution 0.567 0.103 -0.751 0.947 sum -15.531 0.072 16.686 22.796 Atomic orbital electron populations 1.22196 0.94779 1.03456 1.01991 1.21436 0.95211 0.81219 1.03896 1.57261 1.81879 1.22517 1.20913 1.18673 0.96071 0.90508 0.80132 1.21843 1.03307 1.27682 1.06000 0.92914 1.25718 1.00811 0.94700 0.97418 1.70004 1.37729 1.31026 1.17601 0.85593 0.79740 0.78240 0.78383 1.19049 1.20380 1.19981 1.01783 0.75171 0.73151 0.72531 1.93555 1.61900 1.59024 1.83919 1.93465 1.84332 1.57032 1.63203 1.33799 1.24359 1.17117 1.09131 1.22144 0.90149 0.93348 0.91676 1.19039 0.96536 0.99303 0.95823 1.21673 0.96130 0.93613 0.99556 1.21640 0.94648 1.00381 0.96907 1.21775 1.00001 0.94433 0.93420 1.21412 0.93706 0.96441 1.01880 1.21355 0.97035 0.93172 0.93492 1.98391 1.84208 1.47052 1.73929 0.89188 0.92720 0.92688 0.90171 0.89347 0.94843 0.96338 0.92377 0.80951 0.83883 0.84406 0.82104 0.80933 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 10.24 71.98 0.74 -3.81 16 2 C 0.11 3.71 6.40 86.38 0.55 4.26 16 3 N -0.99 -41.61 2.77 -519.85 -1.44 -43.05 16 4 C 0.27 13.75 5.10 85.63 0.44 14.19 16 5 C -0.55 -31.39 9.38 25.60 0.24 -31.15 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.74 5.46 84.65 0.46 1.20 16 8 N -0.92 -54.25 13.29 21.45 0.28 -53.97 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 13 S 2.68 110.29 5.80 -56.49 -0.33 109.97 16 14 O -0.99 -50.18 16.99 -128.00 -2.17 -52.36 16 15 O -0.99 -40.88 15.44 -128.00 -1.98 -42.85 16 16 C -0.74 -23.58 9.74 66.67 0.65 -22.93 16 17 C 0.05 1.33 9.02 23.65 0.21 1.55 16 18 C -0.10 -2.46 5.87 -20.10 -0.12 -2.57 16 19 C -0.09 -1.83 9.40 22.52 0.21 -1.62 16 20 C -0.12 -1.58 10.03 22.24 0.22 -1.35 16 21 C -0.08 -0.82 10.04 22.32 0.22 -0.59 16 22 C -0.12 -1.57 9.82 22.26 0.22 -1.35 16 23 C -0.02 -0.47 6.35 22.58 0.14 -0.33 16 24 Cl -0.06 -1.34 27.42 -2.72 -0.07 -1.41 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 29 H 0.09 2.85 6.91 -2.38 -0.02 2.83 16 30 H 0.03 1.71 8.11 -2.39 -0.02 1.69 16 31 H 0.02 1.01 7.61 -2.38 -0.02 1.00 16 32 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 33 H 0.17 5.02 6.04 -2.91 -0.02 5.00 16 34 H 0.14 4.10 6.14 -2.91 -0.02 4.08 16 35 H 0.14 2.74 6.17 -2.91 -0.02 2.72 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -72.99 353.22 1.58 -71.41 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.07 Total: 9.78 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 4.19 Total: -44.52 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -1.15 Total: -97.02 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -4.15 Total: -95.21 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 110.29 SS G_CDS: -0.33 Total: 109.97 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -72.99 1.58 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.516 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds