Wall clock time and date at job start Tue Mar 31 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48497 * 109.46852 * 269.99930 * 3 2 1 5 5 H 1.48498 * 109.47133 * 29.99953 * 3 2 1 6 6 H 1.48496 * 109.46808 * 149.99813 * 3 2 1 7 7 C 1.39945 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99292 * 197.85632 * 7 2 1 9 9 C 1.41392 * 120.00309 * 17.85150 * 7 2 1 10 10 C 1.40721 * 120.23996 * 24.39753 * 9 7 2 11 11 C 1.37621 * 119.74062 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25053 * 0.02562 * 11 10 9 13 13 S 1.76199 * 119.74793 * 179.97438 * 12 11 10 14 14 O 1.42092 * 106.40387 * 336.45461 * 13 12 11 15 15 O 1.42098 * 106.39824 * 203.53345 * 13 12 11 16 16 N 1.65598 * 107.21856 * 89.99823 * 13 12 11 17 17 C 1.46498 * 120.00149 * 64.99646 * 16 13 12 18 18 H 1.08995 * 109.47597 * 335.00232 * 17 16 13 19 19 C 1.52999 * 109.47215 * 215.00001 * 17 16 13 20 20 C 1.53002 * 109.46980 * 65.00042 * 19 17 16 21 21 O 1.42903 * 109.46898 * 179.97438 * 20 19 17 22 22 C 1.50699 * 109.47008 * 95.00318 * 17 16 13 23 23 O 1.20822 * 120.00079 * 359.97438 * 22 17 16 24 24 O 1.34235 * 119.99832 * 179.97438 * 22 17 16 25 25 C 1.38635 * 120.49786 * 0.24618 * 12 11 10 26 26 C 1.37615 * 120.25331 * 359.45533 * 25 12 11 27 27 H 0.97005 * 119.99853 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.13264 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.87177 * 179.97438 * 11 10 9 30 30 H 0.97004 * 119.99973 * 245.00206 * 16 13 12 31 31 H 1.09007 * 109.47306 * 185.00134 * 19 17 16 32 32 H 1.09003 * 109.47365 * 305.00023 * 19 17 16 33 33 H 1.08998 * 109.47264 * 299.99544 * 20 19 17 34 34 H 1.08997 * 109.47122 * 60.00534 * 20 19 17 35 35 H 0.96699 * 113.99935 * 179.97438 * 21 20 19 36 36 H 0.96704 * 116.99920 * 179.97438 * 24 22 17 37 37 H 1.08005 * 119.87076 * 179.70907 * 25 12 11 38 38 H 1.08004 * 120.13036 * 180.27323 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3764 10 6 0.2209 -2.3616 -1.2123 11 6 -0.4099 -3.5309 -1.5713 12 6 0.0648 -4.7499 -1.1124 13 16 -0.7534 -6.2387 -1.5798 14 8 -2.0859 -5.8762 -1.9146 15 8 -0.4367 -7.2005 -0.5828 16 7 -0.0465 -6.7675 -2.9808 17 6 1.3564 -7.1893 -2.9796 18 1 1.8826 -6.6990 -2.1606 19 6 2.0069 -6.8010 -4.3088 20 6 2.0428 -5.2765 -4.4329 21 8 2.6509 -4.9138 -5.6741 22 6 1.4314 -8.6839 -2.8014 23 8 0.4171 -9.3303 -2.6867 24 8 2.6251 -9.2970 -2.7701 25 6 1.1750 -4.8058 -0.2839 26 6 1.8253 -3.6499 0.0830 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1513 -1.4130 -1.5699 29 1 -1.2785 -3.4986 -2.2124 30 1 -0.5614 -6.7979 -3.8024 31 1 3.0237 -7.1924 -4.3438 32 1 1.4281 -7.2191 -5.1325 33 1 1.0261 -4.8851 -4.3980 34 1 2.6216 -4.8584 -3.6093 35 1 2.7070 -3.9596 -5.8207 36 1 2.6227 -10.2570 -2.6534 37 1 1.5334 -5.7607 0.0715 38 1 2.6926 -3.6961 0.7249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:41 Heat of formation + Delta-G solvation = -207.418877 kcal Electronic energy + Delta-G solvation = -26578.959298 eV Core-core repulsion = 22512.763747 eV Total energy + Delta-G solvation = -4066.195550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38091 -37.71798 -37.38029 -36.58699 -36.21866 -35.35417 -35.18916 -34.14017 -30.82701 -30.36525 -29.58573 -26.87976 -25.92644 -22.45656 -21.61273 -21.44941 -21.11584 -19.21568 -18.20111 -17.73229 -17.51343 -17.26388 -17.06177 -16.23687 -15.83546 -15.51941 -15.42822 -15.04248 -14.43460 -14.19695 -13.99319 -13.49786 -13.31161 -13.01221 -12.83781 -12.53303 -12.28965 -11.85429 -11.82868 -11.55616 -11.52086 -11.44960 -11.44235 -11.38568 -11.31349 -11.22354 -10.98155 -10.80137 -10.48408 -9.99610 -9.89141 -9.79016 -9.59904 -9.34855 -8.07799 -7.82340 -7.23485 -4.90426 1.06535 2.14064 2.16657 2.79371 2.81806 2.85182 2.87206 2.88908 3.50987 3.59186 4.06443 4.13661 4.46073 4.71983 4.79026 4.95944 5.13455 5.15544 5.27080 5.39992 5.57046 5.65511 5.91960 5.94362 5.97471 6.03505 6.44809 6.58713 6.60930 6.79949 6.92785 7.04354 7.23238 7.31334 7.52877 7.59837 7.66662 7.86246 7.86486 8.21891 8.40994 8.54087 9.67704 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.004002 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.577619 B = 6994.880521 C = 7731.723582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.089 0.911 9 C 0.139 3.861 10 C -0.183 4.183 11 C -0.013 4.013 12 C -0.791 4.791 13 S 2.687 3.313 14 O -0.976 6.976 15 O -0.976 6.976 16 N -1.105 6.105 17 C 0.176 3.824 18 H 0.129 0.871 19 C -0.117 4.117 20 C 0.074 3.926 21 O -0.578 6.578 22 C 0.465 3.535 23 O -0.495 6.495 24 O -0.516 6.516 25 C -0.004 4.004 26 C -0.235 4.235 27 H 0.291 0.709 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.417 0.583 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.384 0.616 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -5.898 -7.790 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.135 3.865 10 C -0.203 4.203 11 C -0.033 4.033 12 C -0.888 4.888 13 S 2.786 3.214 14 O -0.966 6.966 15 O -0.966 6.966 16 N -0.860 5.860 17 C 0.065 3.935 18 H 0.147 0.853 19 C -0.156 4.156 20 C -0.003 4.003 21 O -0.384 6.384 22 C 0.303 3.697 23 O -0.380 6.380 24 O -0.327 6.327 25 C -0.024 4.024 26 C -0.255 4.255 27 H 0.102 0.898 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.845 -6.629 -7.257 10.958 hybrid contribution 0.395 1.240 -0.041 1.302 sum 5.239 -5.389 -7.297 10.476 Atomic orbital electron populations 1.69823 1.07954 1.30586 1.29935 1.26163 0.94893 1.02223 0.91857 0.86128 0.80528 0.79429 0.79814 1.18746 1.19809 1.18139 1.19985 0.98583 0.91213 1.36106 0.89326 1.17860 0.90107 0.92127 0.86400 1.21344 0.99778 0.96891 1.02312 1.20243 0.95815 0.91652 0.95606 1.29090 1.18858 1.15222 1.25603 1.01542 0.73321 0.74389 0.72105 1.93509 1.34565 1.84877 1.83678 1.93509 1.85001 1.60980 1.57103 1.55889 1.19181 1.80998 1.29891 1.19969 0.84059 0.87312 1.02120 0.85319 1.21679 1.02571 0.96667 0.94668 1.22139 0.97959 0.94057 0.86188 1.86355 1.83687 1.29103 1.39293 1.24020 0.80954 0.92151 0.72535 1.90721 1.36511 1.66699 1.44101 1.84523 1.34487 1.28741 1.84958 1.20175 0.92030 0.97474 0.92711 1.21019 1.04164 0.92713 1.07629 0.89796 0.85973 0.87820 0.74881 0.88559 0.90049 0.92425 0.92289 0.76891 0.73222 0.87868 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.43 10.95 55.55 0.61 -16.82 16 2 C 0.07 1.56 5.14 -17.34 -0.09 1.47 16 3 Si 0.92 16.12 29.60 -169.99 -5.03 11.09 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 6 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 7 C -0.43 -9.93 9.05 -37.74 -0.34 -10.27 16 8 H 0.09 1.92 7.91 -52.48 -0.42 1.51 16 9 C 0.14 3.27 5.58 -106.82 -0.60 2.67 16 10 C -0.18 -4.25 8.70 -38.87 -0.34 -4.59 16 11 C -0.01 -0.28 9.49 -39.66 -0.38 -0.65 16 12 C -0.79 -16.16 5.84 -39.29 -0.23 -16.39 16 13 S 2.69 51.04 5.65 -107.50 -0.61 50.43 16 14 O -0.98 -20.89 17.26 -57.17 -0.99 -21.88 16 15 O -0.98 -20.94 17.01 -57.17 -0.97 -21.91 16 16 N -1.10 -16.00 4.41 -5.88 -0.03 -16.02 16 17 C 0.18 2.27 2.68 -69.08 -0.18 2.09 16 18 H 0.13 1.62 7.23 -51.93 -0.38 1.25 16 19 C -0.12 -1.26 5.15 -26.73 -0.14 -1.40 16 20 C 0.07 0.86 6.93 37.16 0.26 1.12 16 21 O -0.58 -6.58 13.66 -35.23 -0.48 -7.06 16 22 C 0.47 6.32 7.70 36.01 0.28 6.59 16 23 O -0.49 -8.37 17.19 -18.75 -0.32 -8.69 16 24 O -0.52 -5.21 13.23 -39.27 -0.52 -5.72 16 25 C 0.00 -0.08 8.88 -39.66 -0.35 -0.43 16 26 C -0.23 -5.11 9.80 -38.87 -0.38 -5.49 16 27 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 28 H 0.12 2.90 6.15 -52.49 -0.32 2.57 16 29 H 0.10 2.08 7.60 -52.48 -0.40 1.69 16 30 H 0.42 5.10 8.84 -34.47 -0.30 4.79 16 31 H 0.10 0.95 7.99 -51.93 -0.42 0.53 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.38 2.99 9.12 45.56 0.42 3.40 16 36 H 0.41 2.40 9.10 45.56 0.41 2.82 16 37 H 0.10 1.90 7.59 -52.48 -0.40 1.50 16 38 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -32.73 347.13 -8.20 -40.93 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -2.61 Total: 15.69 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.49 Total: -25.27 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.58 Total: -32.84 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -3.28 Total: -65.26 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.09 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -0.61 Total: 50.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.73 -8.20 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.487 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds