Wall clock time and date at job start Tue Mar 31 2020 05:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47134 * 120.00276 * 2 1 3 5 5 N 1.46495 * 109.46834 * 304.99546 * 4 2 1 6 6 S 1.65603 * 119.99757 * 164.99870 * 5 4 2 7 7 O 1.42101 * 106.40254 * 178.54479 * 6 5 4 8 8 O 1.42096 * 106.40188 * 311.45812 * 6 5 4 9 9 C 1.76196 * 107.21733 * 65.00466 * 6 5 4 10 10 C 1.38636 * 119.74620 * 269.72495 * 9 6 5 11 11 C 1.37624 * 120.24703 * 179.72147 * 10 9 6 12 12 C 1.40717 * 119.74166 * 0.57050 * 11 10 9 13 13 C 1.41395 * 120.24170 * 179.68310 * 12 11 10 14 14 H 1.08002 * 120.00098 * 204.40825 * 13 12 11 15 15 C 1.39948 * 120.00031 * 24.40380 * 13 12 11 16 16 N 1.30821 * 119.99746 * 17.85157 * 15 13 12 17 17 Si 1.86800 * 120.00095 * 197.84719 * 15 13 12 18 18 H 1.48500 * 109.47104 * 90.00268 * 17 15 13 19 19 H 1.48494 * 109.47216 * 210.00756 * 17 15 13 20 20 H 1.48502 * 109.46991 * 330.00545 * 17 15 13 21 21 C 1.40712 * 119.51191 * 359.70418 * 12 11 10 22 22 C 1.37611 * 119.74664 * 0.02562 * 21 12 11 23 23 C 1.50701 * 109.46957 * 240.00212 * 2 1 3 24 24 O 1.20825 * 119.99733 * 264.99869 * 23 2 1 25 25 O 1.34232 * 120.00331 * 85.00204 * 23 2 1 26 26 H 1.08997 * 109.47590 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46890 * 300.00072 * 1 2 3 28 28 H 1.09001 * 109.47198 * 59.99572 * 1 2 3 29 29 H 0.96693 * 114.00085 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47043 * 64.99663 * 4 2 1 31 31 H 1.09004 * 109.46689 * 184.99858 * 4 2 1 32 32 H 0.97004 * 120.00583 * 345.00724 * 5 4 2 33 33 H 1.08001 * 119.87687 * 359.97438 * 10 9 6 34 34 H 1.07998 * 120.12475 * 180.28434 * 11 10 9 35 35 H 0.97008 * 119.99740 * 179.97438 * 16 15 13 36 36 H 1.08005 * 120.12530 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.87977 * 180.02562 * 22 21 12 38 38 H 0.96699 * 116.99847 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1037 2.4423 6 16 1.5241 -0.8888 3.8988 7 8 0.9111 -0.0273 4.8482 8 8 1.0847 -2.2187 3.6587 9 6 3.2231 -1.0003 4.3522 10 6 3.9685 -2.1018 3.9612 11 6 5.2978 -2.1967 4.3047 12 6 5.8967 -1.1759 5.0660 13 6 7.2599 -1.2658 5.4305 14 1 7.6223 -0.7377 6.3001 15 6 8.1395 -2.0393 4.6646 16 7 7.8125 -2.3892 3.4472 17 14 9.7805 -2.5721 5.3806 18 1 9.6205 -3.8800 6.0655 19 1 10.7778 -2.7039 4.2883 20 1 10.2477 -1.5558 6.3574 21 6 5.1288 -0.0653 5.4620 22 6 3.8028 0.0112 5.1024 23 6 2.0323 -0.7104 -1.2305 24 8 2.3196 -1.8827 -1.1762 25 8 2.1605 -0.0408 -2.3868 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.7516 -1.7716 1.2055 31 1 3.1263 -0.6444 1.2951 32 1 1.0291 0.7651 2.3792 33 1 3.5054 -2.8865 3.3814 34 1 5.8778 -3.0536 3.9952 35 1 8.4223 -2.9250 2.9162 36 1 5.5783 0.7237 6.0468 37 1 3.2115 0.8629 5.4049 38 1 2.4862 -0.5390 -3.1488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:12 Heat of formation + Delta-G solvation = -203.900786 kcal Electronic energy + Delta-G solvation = -26242.774466 eV Core-core repulsion = 22176.731472 eV Total energy + Delta-G solvation = -4066.042994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85861 -37.98143 -37.60187 -36.53220 -36.41739 -35.17504 -34.43702 -34.06924 -31.18492 -30.28950 -29.49434 -26.66480 -25.84478 -24.37146 -21.55830 -21.17316 -20.71412 -19.25085 -18.66343 -17.71387 -17.63626 -17.32254 -16.66548 -16.30136 -15.56480 -15.54330 -15.13857 -14.82341 -14.34727 -14.17041 -14.01237 -13.43262 -13.25076 -13.00971 -12.74808 -12.44789 -12.33892 -12.21269 -12.04476 -11.82912 -11.78530 -11.65484 -11.49996 -11.39604 -11.31120 -11.23621 -10.99761 -10.93388 -10.42852 -10.24838 -9.81906 -9.69950 -9.54143 -9.15032 -7.99893 -7.73538 -7.17900 -4.83688 1.17143 1.84866 2.21627 2.61086 2.85948 2.88550 2.90891 2.91528 3.63947 3.66016 3.80899 4.20238 4.25501 4.49809 4.55428 4.87328 5.14771 5.33245 5.38836 5.40981 5.57124 5.60907 5.84057 5.93653 6.05442 6.10260 6.19999 6.65247 6.67922 6.87806 7.01651 7.12122 7.24437 7.31425 7.39632 7.60607 7.62511 7.74233 7.93785 8.28859 8.48158 8.61812 9.73442 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.003951 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.238646 B = 7084.905223 C = 8483.493588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.147 3.853 3 O -0.533 6.533 4 C 0.106 3.894 5 N -1.120 6.120 6 S 2.695 3.305 7 O -0.982 6.982 8 O -0.981 6.981 9 C -0.789 4.789 10 C -0.018 4.018 11 C -0.182 4.182 12 C 0.139 3.861 13 C -0.435 4.435 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.765 5.765 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C 0.003 3.997 23 C 0.456 3.544 24 O -0.498 6.498 25 O -0.505 6.505 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.388 0.612 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 4.111 -9.649 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 O -0.340 6.340 4 C -0.021 4.021 5 N -0.877 5.877 6 S 2.793 3.207 7 O -0.973 6.973 8 O -0.971 6.971 9 C -0.885 4.885 10 C -0.038 4.038 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.462 4.462 14 H 0.106 0.894 15 C -0.150 4.150 16 N -0.388 5.388 17 Si 0.741 3.259 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.017 4.017 23 C 0.295 3.705 24 O -0.384 6.384 25 O -0.316 6.316 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.237 0.763 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.504 3.526 -9.073 12.291 hybrid contribution 2.333 -0.257 -0.537 2.408 sum -5.171 3.268 -9.611 11.392 Atomic orbital electron populations 1.21820 0.89216 1.04120 1.04729 1.21221 0.97491 0.82965 0.88033 1.86597 1.28032 1.22973 1.96378 1.21645 0.98893 0.98322 0.83254 1.55711 1.74008 1.34145 1.23835 1.01224 0.75229 0.72656 0.71550 1.93501 1.76880 1.67790 1.59125 1.93493 1.81563 1.37037 1.85056 1.29125 1.23427 1.08622 1.27355 1.20286 0.94201 0.93937 0.95390 1.21345 0.93267 1.00412 1.05240 1.17861 0.92610 0.88996 0.86968 1.19973 0.93085 1.23331 1.09790 0.89380 1.26138 1.01462 0.93439 0.93940 1.69813 1.36990 1.24954 1.07005 0.86136 0.79611 0.80332 0.79840 1.18749 1.19862 1.18170 1.21051 0.94554 0.99800 1.10560 1.20164 0.94528 0.94546 0.92456 1.24361 0.74548 0.86134 0.85410 1.90796 1.45030 1.17354 1.85235 1.84598 1.78973 1.47360 1.20678 0.89826 0.89417 0.90620 0.76255 0.87991 0.90179 0.75161 0.87836 0.85969 0.89949 0.88178 0.87723 0.73230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.60 37.16 0.32 -1.06 16 2 C 0.15 1.64 1.02 -91.77 -0.09 1.55 16 3 O -0.53 -5.52 12.57 -49.11 -0.62 -6.14 16 4 C 0.11 1.45 5.00 -4.04 -0.02 1.43 16 5 N -1.12 -15.91 5.40 -10.61 -0.06 -15.96 16 6 S 2.69 50.12 5.73 -107.50 -0.62 49.50 16 7 O -0.98 -20.08 17.26 -57.18 -0.99 -21.07 16 8 O -0.98 -20.45 16.72 -57.18 -0.96 -21.40 16 9 C -0.79 -16.93 5.97 -39.29 -0.23 -17.17 16 10 C -0.02 -0.41 9.49 -39.66 -0.38 -0.78 16 11 C -0.18 -4.49 8.70 -38.87 -0.34 -4.83 16 12 C 0.14 3.47 5.57 -106.83 -0.60 2.88 16 13 C -0.43 -10.51 9.05 -37.74 -0.34 -10.85 16 14 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 15 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 16 N -0.77 -17.89 10.95 55.55 0.61 -17.28 16 17 Si 0.92 16.83 29.60 -169.99 -5.03 11.80 16 18 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 19 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 20 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 21 C -0.24 -5.55 9.80 -38.88 -0.38 -5.93 16 22 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 23 C 0.46 5.23 7.17 36.01 0.26 5.48 16 24 O -0.50 -7.24 16.74 -18.75 -0.31 -7.56 16 25 O -0.50 -4.42 13.18 -44.43 -0.59 -5.00 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.09 0.81 6.89 -51.93 -0.36 0.45 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.39 3.09 9.04 45.56 0.41 3.50 16 30 H 0.10 1.50 7.29 -51.93 -0.38 1.12 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.41 4.99 7.58 -34.47 -0.26 4.73 16 33 H 0.10 2.20 7.59 -52.49 -0.40 1.80 16 34 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 35 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 36 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 37 H 0.10 2.06 7.60 -52.48 -0.40 1.66 16 38 H 0.41 1.86 9.10 45.56 0.41 2.28 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -32.35 344.42 -8.17 -40.52 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -2.53 Total: 15.44 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -2.27 Total: -28.04 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.55 Total: -33.24 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -3.46 Total: -61.17 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 50.12 SS G_CDS: -0.62 Total: 49.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.35 -8.17 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.384 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds