Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47134 * 120.00276 * 2 1 3 5 5 N 1.46495 * 109.46834 * 304.99546 * 4 2 1 6 6 S 1.65603 * 119.99757 * 164.99870 * 5 4 2 7 7 O 1.42101 * 106.40254 * 178.54479 * 6 5 4 8 8 O 1.42096 * 106.40188 * 311.45812 * 6 5 4 9 9 C 1.76196 * 107.21733 * 65.00466 * 6 5 4 10 10 C 1.38636 * 119.74620 * 269.72495 * 9 6 5 11 11 C 1.37624 * 120.24703 * 179.72147 * 10 9 6 12 12 C 1.40717 * 119.74166 * 0.57050 * 11 10 9 13 13 C 1.41395 * 120.24170 * 179.68310 * 12 11 10 14 14 H 1.08002 * 120.00098 * 204.40825 * 13 12 11 15 15 C 1.39948 * 120.00031 * 24.40380 * 13 12 11 16 16 N 1.30821 * 119.99746 * 17.85157 * 15 13 12 17 17 Si 1.86800 * 120.00095 * 197.84719 * 15 13 12 18 18 H 1.48500 * 109.47104 * 90.00268 * 17 15 13 19 19 H 1.48494 * 109.47216 * 210.00756 * 17 15 13 20 20 H 1.48502 * 109.46991 * 330.00545 * 17 15 13 21 21 C 1.40712 * 119.51191 * 359.70418 * 12 11 10 22 22 C 1.37611 * 119.74664 * 0.02562 * 21 12 11 23 23 C 1.50701 * 109.46957 * 240.00212 * 2 1 3 24 24 O 1.20825 * 119.99733 * 264.99869 * 23 2 1 25 25 O 1.34232 * 120.00331 * 85.00204 * 23 2 1 26 26 H 1.08997 * 109.47590 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46890 * 300.00072 * 1 2 3 28 28 H 1.09001 * 109.47198 * 59.99572 * 1 2 3 29 29 H 0.96693 * 114.00085 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47043 * 64.99663 * 4 2 1 31 31 H 1.09004 * 109.46689 * 184.99858 * 4 2 1 32 32 H 0.97004 * 120.00583 * 345.00724 * 5 4 2 33 33 H 1.08001 * 119.87687 * 359.97438 * 10 9 6 34 34 H 1.07998 * 120.12475 * 180.28434 * 11 10 9 35 35 H 0.97008 * 119.99740 * 179.97438 * 16 15 13 36 36 H 1.08005 * 120.12530 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.87977 * 180.02562 * 22 21 12 38 38 H 0.96699 * 116.99847 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1037 2.4423 6 16 1.5241 -0.8888 3.8988 7 8 0.9111 -0.0273 4.8482 8 8 1.0847 -2.2187 3.6587 9 6 3.2231 -1.0003 4.3522 10 6 3.9685 -2.1018 3.9612 11 6 5.2978 -2.1967 4.3047 12 6 5.8967 -1.1759 5.0660 13 6 7.2599 -1.2658 5.4305 14 1 7.6223 -0.7377 6.3001 15 6 8.1395 -2.0393 4.6646 16 7 7.8125 -2.3892 3.4472 17 14 9.7805 -2.5721 5.3806 18 1 9.6205 -3.8800 6.0655 19 1 10.7778 -2.7039 4.2883 20 1 10.2477 -1.5558 6.3574 21 6 5.1288 -0.0653 5.4620 22 6 3.8028 0.0112 5.1024 23 6 2.0323 -0.7104 -1.2305 24 8 2.3196 -1.8827 -1.1762 25 8 2.1605 -0.0408 -2.3868 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.7516 -1.7716 1.2055 31 1 3.1263 -0.6444 1.2951 32 1 1.0291 0.7651 2.3792 33 1 3.5054 -2.8865 3.3814 34 1 5.8778 -3.0536 3.9952 35 1 8.4223 -2.9250 2.9162 36 1 5.5783 0.7237 6.0468 37 1 3.2115 0.8629 5.4049 38 1 2.4862 -0.5390 -3.1488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = -230.243198 kcal Electronic energy + Delta-G solvation = -26243.916759 eV Core-core repulsion = 22176.731472 eV Total energy + Delta-G solvation = -4067.185287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76182 -39.38793 -38.89772 -38.13131 -37.28690 -36.80229 -35.81735 -35.51989 -32.13732 -32.04355 -31.29131 -27.69274 -27.56304 -25.33081 -23.30978 -22.95643 -21.62177 -20.56529 -19.67409 -19.42290 -18.84732 -18.49421 -18.24580 -17.35377 -17.21155 -16.76535 -16.30219 -15.88358 -15.74408 -15.65093 -15.14647 -14.96287 -14.92863 -14.13341 -14.02970 -13.93509 -13.59993 -13.50040 -13.21093 -13.12228 -13.07479 -13.01318 -12.91156 -12.89454 -12.86685 -12.64733 -12.60074 -11.98708 -11.94053 -11.55933 -11.37945 -11.24422 -11.15534 -10.50687 -9.79963 -9.55322 -8.88298 -6.65807 -0.35266 0.47563 0.95109 1.05817 1.35476 1.43018 1.50269 1.74493 2.10808 2.28940 2.52700 2.91305 2.97224 3.29117 3.51508 3.57215 3.72589 4.11306 4.29711 4.31638 4.37198 4.45238 4.66843 4.72345 4.79128 4.87473 4.94643 5.10209 5.11365 5.23624 5.45586 5.52052 5.59456 5.75962 5.92843 6.11158 6.15630 6.44155 6.48750 6.67851 6.80539 6.87792 8.06526 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.003951 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.238646 B = 7084.905223 C = 8483.493588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 O -0.533 6.533 4 C 0.101 3.899 5 N -1.100 6.100 6 S 2.730 3.270 7 O -0.995 6.995 8 O -1.000 7.000 9 C -0.798 4.798 10 C -0.021 4.021 11 C -0.207 4.207 12 C 0.112 3.888 13 C -0.466 4.466 14 H 0.092 0.908 15 C 0.036 3.964 16 N -0.795 5.795 17 Si 0.990 3.010 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.253 1.253 21 C -0.256 4.256 22 C 0.000 4.000 23 C 0.465 3.535 24 O -0.535 6.535 25 O -0.496 6.496 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.428 0.572 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.298 0.702 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 5.097 -10.396 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.110 3.890 3 O -0.341 6.341 4 C -0.027 4.027 5 N -0.861 5.861 6 S 2.825 3.175 7 O -0.985 6.985 8 O -0.991 6.991 9 C -0.891 4.891 10 C -0.041 4.041 11 C -0.228 4.228 12 C 0.109 3.891 13 C -0.493 4.493 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.418 5.418 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.176 1.176 21 C -0.277 4.277 22 C -0.019 4.019 23 C 0.306 3.694 24 O -0.424 6.424 25 O -0.309 6.309 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.249 0.751 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.266 0.734 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -7.822 4.545 -9.832 13.361 hybrid contribution 2.319 -0.495 -0.431 2.410 sum -5.504 4.050 -10.263 12.330 Atomic orbital electron populations 1.21915 0.87954 1.04610 1.05839 1.21057 0.98364 0.82876 0.86749 1.86593 1.29156 1.22131 1.96226 1.21721 0.98663 0.98204 0.84106 1.55173 1.73723 1.34666 1.22587 1.00201 0.73419 0.72081 0.71795 1.93479 1.76541 1.67976 1.60548 1.93471 1.81283 1.38730 1.85578 1.29626 1.25000 1.07797 1.26649 1.20448 0.93813 0.94693 0.95156 1.21348 0.94154 1.00511 1.06760 1.18195 0.93559 0.89699 0.87686 1.20250 0.93447 1.24994 1.10596 0.89034 1.26978 1.04786 0.92726 0.93868 1.69844 1.38559 1.25298 1.08087 0.85067 0.75110 0.79697 0.79196 1.18618 1.18779 1.17635 1.21281 0.95374 0.99847 1.11166 1.20467 0.94328 0.95283 0.91850 1.24310 0.73592 0.85455 0.86080 1.90794 1.46825 1.18920 1.85887 1.84545 1.78444 1.47196 1.20704 0.89711 0.88805 0.89074 0.75070 0.89093 0.90760 0.73401 0.86964 0.87306 0.89072 0.87017 0.85376 0.70921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.60 71.98 0.62 -1.89 16 2 C 0.15 3.15 1.02 -11.54 -0.01 3.14 16 3 O -0.53 -9.74 12.57 -135.71 -1.71 -11.44 16 4 C 0.10 2.64 5.00 86.38 0.43 3.07 16 5 N -1.10 -29.37 5.40 -187.49 -1.01 -30.38 16 6 S 2.73 98.12 5.73 -56.49 -0.32 97.80 16 7 O -0.99 -38.79 17.26 -128.00 -2.21 -41.00 16 8 O -1.00 -40.79 16.72 -128.00 -2.14 -42.94 16 9 C -0.80 -34.00 5.97 22.46 0.13 -33.86 16 10 C -0.02 -0.98 9.49 22.22 0.21 -0.77 16 11 C -0.21 -10.58 8.70 22.73 0.20 -10.38 16 12 C 0.11 5.75 5.57 -21.29 -0.12 5.63 16 13 C -0.47 -23.08 9.05 23.46 0.21 -22.87 16 14 H 0.09 4.29 7.91 -2.91 -0.02 4.26 16 15 C 0.04 1.65 5.14 85.26 0.44 2.09 16 16 N -0.80 -37.93 10.95 21.83 0.24 -37.69 16 17 Si 0.99 34.33 29.60 68.60 2.03 36.36 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.26 -8.62 7.11 99.48 0.71 -7.92 16 20 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 21 C -0.26 -12.03 9.80 22.73 0.22 -11.80 16 22 C 0.00 0.02 9.49 22.22 0.21 0.23 16 23 C 0.46 9.94 7.17 71.24 0.51 10.45 16 24 O -0.53 -15.26 16.74 21.97 0.37 -14.89 16 25 O -0.50 -7.52 13.18 -46.49 -0.61 -8.13 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.48 6.89 -2.38 -0.02 1.47 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.40 5.49 9.04 -74.06 -0.67 4.82 16 30 H 0.09 2.64 7.29 -2.39 -0.02 2.62 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 32 H 0.43 9.24 7.58 -96.74 -0.73 8.51 16 33 H 0.11 4.87 7.59 -2.91 -0.02 4.85 16 34 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 35 H 0.30 12.66 8.30 -92.70 -0.77 11.90 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.13 4.83 7.60 -2.91 -0.02 4.81 16 38 H 0.43 2.91 9.10 -74.06 -0.67 2.23 16 Total: -1.00 -69.30 344.42 -3.24 -72.54 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.93 Total: 36.73 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 3.06 Total: -56.96 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.77 Total: -68.07 kcal Atomic # 8 Polarization: -112.10 SS G_CDS: -6.30 Total: -118.40 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Atomic # 16 Polarization: 98.12 SS G_CDS: -0.32 Total: 97.80 kcal Total: -69.30 -3.24 -72.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.706 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds