Wall clock time and date at job start Tue Mar 31 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47085 * 2 1 4 4 C 1.53009 * 109.47173 * 240.00461 * 2 1 3 5 5 N 1.46494 * 109.47231 * 59.99627 * 4 2 1 6 6 S 1.65598 * 120.00033 * 164.99977 * 5 4 2 7 7 O 1.42102 * 106.40356 * 311.46521 * 6 5 4 8 8 O 1.42102 * 106.40223 * 178.54151 * 6 5 4 9 9 C 1.76204 * 107.21737 * 65.00320 * 6 5 4 10 10 C 1.38638 * 119.74407 * 269.73152 * 9 6 5 11 11 C 1.37627 * 120.24286 * 179.72161 * 10 9 6 12 12 C 1.40717 * 119.74395 * 0.56655 * 11 10 9 13 13 C 1.41384 * 120.24349 * 179.68371 * 12 11 10 14 14 H 1.08006 * 120.00370 * 204.40860 * 13 12 11 15 15 C 1.39953 * 120.00184 * 24.40714 * 13 12 11 16 16 N 1.30819 * 119.99488 * 17.84698 * 15 13 12 17 17 Si 1.86803 * 119.99976 * 197.84636 * 15 13 12 18 18 H 1.48499 * 109.46946 * 60.00241 * 17 15 13 19 19 H 1.48506 * 109.46624 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47416 * 299.99808 * 17 15 13 21 21 C 1.40721 * 119.51097 * 359.70479 * 12 11 10 22 22 C 1.37611 * 119.74561 * 0.02562 * 21 12 11 23 23 C 1.50694 * 109.47549 * 120.00186 * 2 1 3 24 24 O 1.20827 * 120.00128 * 94.99545 * 23 2 1 25 25 O 1.34233 * 120.00030 * 275.00433 * 23 2 1 26 26 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47196 * 299.99924 * 1 2 3 28 28 H 1.09002 * 109.47434 * 59.99659 * 1 2 3 29 29 H 0.96700 * 114.00184 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46501 * 300.00022 * 4 2 1 31 31 H 1.08995 * 109.46741 * 180.02562 * 4 2 1 32 32 H 0.97000 * 120.00089 * 345.00178 * 5 4 2 33 33 H 1.07997 * 119.88020 * 359.97211 * 10 9 6 34 34 H 1.07997 * 120.12436 * 180.27555 * 11 10 9 35 35 H 0.97007 * 119.99317 * 179.97438 * 16 15 13 36 36 H 1.08005 * 120.12471 * 179.97438 * 21 12 11 37 37 H 1.08002 * 119.87774 * 180.02562 * 22 21 12 38 38 H 0.96701 * 116.99544 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.5516 -0.0306 -2.4454 6 16 2.2317 -0.3494 -3.9213 7 8 3.6390 -0.2723 -3.7397 8 8 1.5257 0.4413 -4.8677 9 6 1.8714 -2.0299 -4.3095 10 6 2.7513 -3.0291 -3.9228 11 6 2.4772 -4.3456 -4.2156 12 6 1.3048 -4.6745 -4.9208 13 6 1.0161 -6.0229 -5.2331 14 1 0.3765 -6.2582 -6.0709 15 6 1.5593 -7.0527 -4.4566 16 7 2.0317 -6.7935 -3.2645 17 14 1.6097 -8.7974 -5.1224 18 1 2.4130 -8.8276 -6.3709 19 1 2.2293 -9.6942 -4.1138 20 1 0.2276 -9.2570 -5.4116 21 6 0.4219 -3.6514 -5.3132 22 6 0.7134 -2.3424 -5.0047 23 6 2.0324 -0.7104 1.2304 24 8 2.3197 -1.8828 1.1761 25 8 2.1605 -0.0408 2.3867 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.9703 1.4237 0.0004 30 1 1.6766 -1.7488 -1.2494 31 1 3.1299 -0.7215 -1.2491 32 1 0.8299 0.6134 -2.3729 33 1 3.6531 -2.7738 -3.3862 34 1 3.1618 -5.1228 -3.9095 35 1 2.4078 -7.5075 -2.7261 36 1 -0.4807 -3.8925 -5.8552 37 1 0.0371 -1.5555 -5.3045 38 1 2.4863 -0.5391 3.1487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:13 Heat of formation + Delta-G solvation = -203.202013 kcal Electronic energy + Delta-G solvation = -26254.676687 eV Core-core repulsion = 22188.663994 eV Total energy + Delta-G solvation = -4066.012693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85392 -37.98612 -37.58168 -36.52365 -36.41512 -35.17140 -34.43806 -34.04904 -31.20501 -30.27249 -29.47654 -26.65998 -25.82965 -24.37291 -21.54406 -21.15534 -20.70481 -19.21483 -18.70569 -17.70049 -17.62064 -17.32601 -16.73157 -16.19525 -15.63139 -15.52447 -15.15906 -14.66197 -14.40257 -14.14162 -14.07260 -13.41500 -13.24026 -13.00661 -12.73461 -12.42621 -12.37792 -12.20285 -12.01406 -11.81906 -11.77704 -11.65120 -11.48728 -11.39106 -11.29626 -11.23736 -10.94954 -10.90832 -10.44821 -10.30640 -9.79782 -9.68242 -9.51129 -9.12312 -7.97794 -7.71509 -7.15407 -4.81595 1.17477 1.85478 2.24148 2.61124 2.87256 2.89063 2.91530 2.94454 3.65228 3.66402 3.80732 4.21880 4.26165 4.45926 4.58925 4.86296 5.14203 5.31270 5.39158 5.46894 5.51401 5.68203 5.84765 5.93643 6.06268 6.11359 6.20655 6.66908 6.69399 6.89335 7.03633 7.10557 7.24007 7.32912 7.41513 7.62355 7.63024 7.75798 7.95631 8.30571 8.49956 8.63899 9.75755 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003953 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.655404 B = 7082.336829 C = 8518.918593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.147 3.853 3 O -0.532 6.532 4 C 0.107 3.893 5 N -1.119 6.119 6 S 2.696 3.304 7 O -0.984 6.984 8 O -0.982 6.982 9 C -0.789 4.789 10 C -0.017 4.017 11 C -0.182 4.182 12 C 0.140 3.860 13 C -0.435 4.435 14 H 0.088 0.912 15 C 0.072 3.928 16 N -0.764 5.764 17 Si 0.918 3.082 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.261 1.261 21 C -0.239 4.239 22 C 0.003 3.997 23 C 0.454 3.546 24 O -0.494 6.494 25 O -0.506 6.506 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.386 0.614 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.412 0.588 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 7.864 9.507 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.103 3.897 3 O -0.338 6.338 4 C -0.021 4.021 5 N -0.877 5.877 6 S 2.795 3.205 7 O -0.974 6.974 8 O -0.973 6.973 9 C -0.886 4.886 10 C -0.037 4.037 11 C -0.202 4.202 12 C 0.136 3.864 13 C -0.462 4.462 14 H 0.106 0.894 15 C -0.150 4.150 16 N -0.386 5.386 17 Si 0.741 3.259 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.260 4.260 22 C -0.017 4.017 23 C 0.293 3.707 24 O -0.380 6.380 25 O -0.317 6.317 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.235 0.765 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.119 8.306 8.891 12.219 hybrid contribution 0.249 -1.824 0.616 1.941 sum -0.871 6.482 9.507 11.539 Atomic orbital electron populations 1.21835 0.89149 1.04326 1.04698 1.21227 0.97571 0.82863 0.88036 1.86607 1.27765 1.23045 1.96417 1.21631 1.00173 0.97025 0.83228 1.55696 1.53059 1.56050 1.22847 1.01180 0.72995 0.74869 0.71485 1.93479 1.30536 1.87756 1.85643 1.93499 1.74734 1.69947 1.59112 1.29104 1.10572 1.20190 1.28697 1.20259 0.95312 0.93012 0.95140 1.21335 0.98599 0.94524 1.05739 1.17848 0.89278 0.92669 0.86602 1.19933 1.24311 0.90515 1.11419 0.89436 1.26143 0.92432 1.02657 0.93804 1.69811 1.25396 1.36254 1.07104 0.86192 0.80058 0.79686 0.80000 1.18330 1.19879 1.18547 1.21045 1.00958 0.92714 1.11259 1.20153 0.92876 0.96156 0.92528 1.24370 0.74717 0.86179 0.85397 1.90825 1.44816 1.17192 1.85195 1.84598 1.79058 1.47380 1.20688 0.89561 0.90534 0.89489 0.76526 0.88676 0.89563 0.75294 0.87941 0.85984 0.89860 0.88194 0.87746 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.65 37.15 0.32 -1.09 16 2 C 0.15 1.65 1.05 -91.77 -0.10 1.55 16 3 O -0.53 -5.47 12.63 -49.12 -0.62 -6.09 16 4 C 0.11 1.46 4.86 -4.04 -0.02 1.44 16 5 N -1.12 -15.99 5.72 -10.62 -0.06 -16.05 16 6 S 2.70 50.20 5.73 -107.50 -0.62 49.58 16 7 O -0.98 -20.34 16.72 -57.17 -0.96 -21.30 16 8 O -0.98 -20.15 17.26 -57.17 -0.99 -21.14 16 9 C -0.79 -17.02 5.97 -39.29 -0.23 -17.26 16 10 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 11 C -0.18 -4.52 8.70 -38.87 -0.34 -4.85 16 12 C 0.14 3.51 5.57 -106.83 -0.60 2.92 16 13 C -0.43 -10.60 9.05 -37.74 -0.34 -10.94 16 14 H 0.09 2.01 7.91 -52.48 -0.41 1.60 16 15 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 16 N -0.76 -18.10 10.95 55.55 0.61 -17.49 16 17 Si 0.92 16.96 29.60 -169.99 -5.03 11.93 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 21 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 22 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 23 C 0.45 5.21 7.17 36.00 0.26 5.47 16 24 O -0.49 -7.34 16.85 -18.75 -0.32 -7.66 16 25 O -0.51 -4.37 13.18 -44.44 -0.59 -4.95 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.79 6.60 -51.93 -0.34 0.45 16 29 H 0.39 2.92 9.04 45.56 0.41 3.33 16 30 H 0.10 1.43 7.87 -51.93 -0.41 1.03 16 31 H 0.09 1.18 7.75 -51.93 -0.40 0.77 16 32 H 0.41 4.99 7.08 -34.47 -0.24 4.74 16 33 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 34 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 35 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 36 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 37 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 38 H 0.41 1.82 9.10 45.56 0.41 2.23 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -32.73 344.26 -8.15 -40.88 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -2.51 Total: 15.33 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.27 Total: -28.24 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.55 Total: -33.54 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -3.46 Total: -61.14 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 50.20 SS G_CDS: -0.62 Total: 49.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.73 -8.15 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.319 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds