Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00281 * 2 1 4 4 O 1.20824 * 119.99993 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00216 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.46871 * 60.00116 * 5 3 2 7 7 C 1.52994 * 109.47112 * 300.00047 * 5 3 2 8 8 O 1.42901 * 109.47596 * 304.99894 * 7 5 3 9 9 N 1.46501 * 109.47372 * 180.02562 * 5 3 2 10 10 S 1.65598 * 120.00393 * 215.00138 * 9 5 3 11 11 O 1.42101 * 106.40430 * 178.53738 * 10 9 5 12 12 O 1.42103 * 106.39877 * 311.46098 * 10 9 5 13 13 C 1.76202 * 107.21764 * 64.99772 * 10 9 5 14 14 C 1.38635 * 119.74977 * 269.73435 * 13 10 9 15 15 C 1.37615 * 120.24896 * 179.72452 * 14 13 10 16 16 C 1.40725 * 119.74457 * 0.56205 * 15 14 13 17 17 C 1.41388 * 120.24383 * 179.68454 * 16 15 14 18 18 H 1.08008 * 119.99937 * 155.31468 * 17 16 15 19 19 C 1.39943 * 120.00370 * 335.31303 * 17 16 15 20 20 N 1.30830 * 119.99878 * 342.23204 * 19 17 16 21 21 Si 1.86803 * 120.00171 * 162.23402 * 19 17 16 22 22 H 1.48497 * 109.47085 * 94.66252 * 21 19 17 23 23 H 1.48498 * 109.46875 * 214.66489 * 21 19 17 24 24 H 1.48501 * 109.46908 * 334.66259 * 21 19 17 25 25 C 1.40712 * 119.50955 * 359.70740 * 16 15 14 26 26 C 1.37627 * 119.74698 * 0.02562 * 25 16 15 27 27 H 1.08995 * 109.47496 * 59.99897 * 1 2 3 28 28 H 1.09003 * 109.47663 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47058 * 299.99617 * 1 2 3 30 30 H 1.09004 * 109.47358 * 64.99921 * 7 5 3 31 31 H 1.09005 * 109.47242 * 184.99879 * 7 5 3 32 32 H 0.96693 * 114.00213 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99759 * 34.99556 * 9 5 3 34 34 H 1.07996 * 119.87701 * 359.97192 * 14 13 10 35 35 H 1.07995 * 120.13351 * 180.27558 * 15 14 13 36 36 H 0.96995 * 119.99586 * 180.02562 * 20 19 17 37 37 H 1.07993 * 120.13086 * 179.97438 * 25 16 15 38 38 H 1.07995 * 119.87792 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9556 0.7808 -0.8908 7 6 4.1138 0.5809 1.2482 8 8 3.5139 1.1524 2.4125 9 7 3.9818 2.6796 0.0002 10 16 5.3428 3.1411 -0.8227 11 8 5.4530 4.5483 -0.6588 12 8 6.3675 2.2320 -0.4451 13 6 5.0365 2.8622 -2.5353 14 6 5.3625 1.6398 -3.1023 15 6 5.1225 1.4088 -4.4375 16 6 4.5549 2.4234 -5.2306 17 6 4.3100 2.1998 -6.6050 18 1 3.5483 2.7689 -7.1174 19 6 5.0546 1.2413 -7.3016 20 7 6.1843 0.8044 -6.8071 21 14 4.4355 0.5856 -8.9376 22 1 5.0481 1.3615 -10.0456 23 1 4.8084 -0.8457 -9.0702 24 1 2.9578 0.7197 -8.9973 25 6 4.2333 3.6621 -4.6456 26 6 4.4769 3.8689 -3.3070 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8808 -0.4830 1.2045 31 1 5.1947 0.7145 1.2938 32 1 3.8149 0.7596 3.2432 33 1 3.4596 3.3396 0.4826 34 1 5.8027 0.8644 -2.4929 35 1 5.3731 0.4543 -4.8762 36 1 6.7005 0.1404 -7.2902 37 1 3.7977 4.4478 -5.2449 38 1 4.2306 4.8186 -2.8557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092132352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = -193.064241 kcal Electronic energy + Delta-G solvation = -26444.590054 eV Core-core repulsion = 22379.016968 eV Total energy + Delta-G solvation = -4065.573087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55069 -37.63587 -37.49435 -36.53309 -36.44047 -35.20250 -34.47137 -34.07570 -30.31478 -29.53879 -29.44856 -27.45047 -25.87014 -24.02397 -21.59089 -21.22540 -20.84772 -19.30883 -18.04110 -17.65324 -17.40204 -17.24105 -16.73325 -16.51054 -16.24283 -15.54991 -15.37661 -14.65040 -14.40572 -14.15152 -13.84804 -13.48458 -13.41981 -13.24404 -12.66780 -12.48216 -12.30956 -12.23223 -11.92593 -11.79947 -11.56710 -11.51313 -11.43511 -11.36240 -11.25043 -10.91128 -10.82681 -10.67033 -10.49181 -10.07725 -9.86003 -9.75294 -9.53329 -9.24842 -8.00831 -7.75132 -7.18409 -4.84288 1.10353 2.20140 2.23090 2.60418 2.84607 2.86585 2.88515 2.93417 3.55990 3.63708 4.00578 4.18704 4.43682 4.61136 4.83283 5.02583 5.04664 5.11969 5.13848 5.26170 5.34583 5.42474 5.57574 5.87014 6.02912 6.08660 6.32369 6.63947 6.67175 6.85978 7.00619 7.19370 7.29959 7.38876 7.45548 7.57456 7.72648 7.74108 7.92877 8.26941 8.47024 8.60523 9.73058 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.004095 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.050421 B = 6835.790570 C = 7909.332342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.492 6.492 5 C 0.175 3.825 6 H 0.138 0.862 7 C 0.061 3.939 8 O -0.569 6.569 9 N -1.104 6.104 10 S 2.693 3.307 11 O -0.976 6.976 12 O -0.979 6.979 13 C -0.793 4.793 14 C -0.023 4.023 15 C -0.181 4.181 16 C 0.140 3.860 17 C -0.433 4.433 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.763 5.763 21 Si 0.917 3.083 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.256 1.256 25 C -0.238 4.238 26 C 0.006 3.994 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.382 0.618 33 H 0.422 0.578 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.290 0.710 37 H 0.101 0.899 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -6.362 10.145 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.378 6.378 5 C 0.065 3.935 6 H 0.155 0.845 7 C -0.018 4.018 8 O -0.375 6.375 9 N -0.860 5.860 10 S 2.792 3.208 11 O -0.967 6.967 12 O -0.969 6.969 13 C -0.890 4.890 14 C -0.043 4.043 15 C -0.201 4.201 16 C 0.136 3.864 17 C -0.460 4.460 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.385 5.385 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.259 4.259 26 C -0.014 4.014 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.229 0.771 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.714 -5.642 10.002 12.827 hybrid contribution -0.707 -0.514 -0.879 1.240 sum -6.421 -6.156 9.123 12.742 Atomic orbital electron populations 1.23257 0.76214 1.03578 1.02638 1.86458 1.23517 1.33122 1.84267 1.23509 0.91598 0.81670 0.72143 1.90644 1.66412 1.36337 1.44361 1.20220 0.88246 0.84644 1.00399 0.84516 1.22752 0.98406 0.96263 0.84416 1.86480 1.69751 1.64930 1.16290 1.55788 1.48211 1.13203 1.68827 1.01355 0.72226 0.72807 0.74445 1.93510 1.85359 1.30552 1.87256 1.93489 1.54072 1.65878 1.83496 1.29115 1.33144 1.05542 1.21185 1.20268 0.94694 0.93459 0.95891 1.21344 1.06450 1.00057 0.92281 1.17864 0.85786 0.89874 0.92888 1.19963 1.15876 1.15876 0.94311 0.89385 1.26152 0.93514 0.94522 1.00840 1.69823 1.08925 1.21685 1.38109 0.86140 0.80805 0.78798 0.80289 1.19055 1.19529 1.17985 1.21035 1.12378 0.97574 0.94884 1.20174 0.91996 0.95139 0.94082 0.91735 0.88115 0.91950 0.91251 0.90095 0.77057 0.74279 0.87733 0.85912 0.89880 0.88107 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.63 10.49 -39.23 -0.41 -5.04 16 3 C 0.47 7.14 6.84 36.01 0.25 7.39 16 4 O -0.49 -8.66 15.74 -18.75 -0.30 -8.96 16 5 C 0.18 2.52 3.09 -69.08 -0.21 2.31 16 6 H 0.14 1.85 7.24 -51.93 -0.38 1.48 16 7 C 0.06 0.70 6.81 37.15 0.25 0.96 16 8 O -0.57 -6.34 13.09 -35.23 -0.46 -6.80 16 9 N -1.10 -17.76 5.21 -5.89 -0.03 -17.79 16 10 S 2.69 51.48 5.65 -107.50 -0.61 50.88 16 11 O -0.98 -21.01 17.26 -57.17 -0.99 -22.00 16 12 O -0.98 -19.59 16.46 -57.17 -0.94 -20.53 16 13 C -0.79 -17.25 5.84 -39.29 -0.23 -17.48 16 14 C -0.02 -0.51 8.88 -39.66 -0.35 -0.86 16 15 C -0.18 -4.39 8.70 -38.87 -0.34 -4.73 16 16 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 17 C -0.43 -10.49 9.05 -37.75 -0.34 -10.83 16 18 H 0.09 2.02 7.91 -52.48 -0.41 1.60 16 19 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 20 N -0.76 -17.91 10.97 55.55 0.61 -17.30 16 21 Si 0.92 16.68 29.60 -169.99 -5.03 11.65 16 22 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 25 C -0.24 -5.65 9.80 -38.87 -0.38 -6.04 16 26 C 0.01 0.14 9.49 -39.66 -0.38 -0.23 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.94 7.59 -51.93 -0.39 0.55 16 32 H 0.38 2.34 9.12 45.56 0.42 2.76 16 33 H 0.42 6.59 8.21 -34.47 -0.28 6.31 16 34 H 0.10 2.05 7.59 -52.49 -0.40 1.65 16 35 H 0.12 2.99 6.18 -52.49 -0.32 2.66 16 36 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.11 2.19 7.60 -52.49 -0.40 1.79 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -32.43 345.86 -7.71 -40.14 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -3.42 Total: 14.17 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.35 Total: -23.63 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.58 Total: -35.09 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -3.10 Total: -63.32 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 51.48 SS G_CDS: -0.61 Total: 50.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.43 -7.71 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.926 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds