Wall clock time and date at job start Tue Mar 31 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99990 * 2 1 4 4 C 1.53004 * 109.47074 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47375 * 64.99669 * 4 3 2 6 6 C 1.42897 * 114.00161 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52210 * 210.00026 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.37054 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99801 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99735 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47527 * 89.99956 * 16 14 12 18 18 H 1.08009 * 119.99486 * 359.97438 * 17 16 14 19 19 C 1.37868 * 120.00223 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46995 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47261 * 119.99939 * 21 19 17 24 24 H 1.48506 * 109.47056 * 239.99773 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47485 * 300.00453 * 1 2 3 29 29 H 1.09008 * 109.47172 * 60.00605 * 1 2 3 30 30 H 1.08997 * 109.47612 * 59.99646 * 3 2 1 31 31 H 1.09005 * 109.47115 * 299.99790 * 3 2 1 32 32 H 1.09003 * 109.46742 * 304.99902 * 4 3 2 33 33 H 1.08999 * 109.47266 * 185.00209 * 4 3 2 34 34 H 1.09006 * 109.52169 * 330.12185 * 6 5 4 35 35 H 1.09006 * 109.50431 * 62.43518 * 7 6 5 36 36 H 1.08995 * 109.53846 * 302.33626 * 7 6 5 37 37 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 38 38 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 39 39 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 40 40 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 41 41 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 42 42 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 43 43 H 1.08999 * 109.46908 * 90.00559 * 15 14 12 44 44 H 1.09000 * 109.47065 * 210.00008 * 15 14 12 45 45 H 1.08990 * 109.47304 * 330.00300 * 15 14 12 46 46 H 1.09004 * 109.46561 * 209.99850 * 16 14 12 47 47 H 1.08998 * 109.47073 * 329.99510 * 16 14 12 48 48 H 0.97000 * 119.99819 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 50 50 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 51 51 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 52 52 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3811 0.4190 -1.3245 7 6 5.7996 0.4968 -2.7953 8 6 7.3085 0.2653 -2.9042 9 7 7.6440 -1.0527 -2.3502 10 6 9.0629 -1.3675 -2.5630 11 6 9.4330 -2.6191 -1.7644 12 6 10.8889 -2.9417 -1.9821 13 8 11.5639 -2.2400 -2.7053 14 7 11.4405 -4.0106 -1.3741 15 6 10.6250 -4.8584 -0.5011 16 6 12.8557 -4.3244 -1.5863 17 6 13.6880 -3.6199 -0.5462 18 1 13.2106 -3.0000 0.1983 19 6 15.0589 -3.7668 -0.5449 20 7 15.6402 -4.5222 -1.4511 21 14 16.0906 -2.8929 0.7440 22 1 15.2030 -2.1105 1.6414 23 1 16.8410 -3.8963 1.5411 24 1 17.0481 -1.9767 0.0738 25 6 7.2944 -1.1348 -0.9264 26 6 5.7852 -0.9450 -0.7585 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5681 0.8410 33 1 3.9786 2.1764 0.0890 34 1 5.8789 1.2089 -0.7619 35 1 5.5530 1.4815 -3.1923 36 1 5.2721 -0.2679 -3.3653 37 1 7.8359 1.0387 -2.3460 38 1 7.6074 0.3057 -3.9517 39 1 9.6750 -0.5296 -2.2294 40 1 9.2402 -1.5475 -3.6233 41 1 9.2558 -2.4391 -0.7040 42 1 8.8210 -3.4570 -2.0980 43 1 10.1718 -5.6562 -1.0896 44 1 11.2548 -5.2926 0.2753 45 1 9.8416 -4.2575 -0.0396 46 1 13.0054 -5.4010 -1.5034 47 1 13.1568 -3.9912 -2.5795 48 1 16.6046 -4.6257 -1.4499 49 1 7.5832 -2.1112 -0.5372 50 1 7.8219 -0.3548 -0.3773 51 1 5.5282 -0.9905 0.2998 52 1 5.2573 -1.7329 -1.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092797176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:32 Heat of formation + Delta-G solvation = -125.073331 kcal Electronic energy + Delta-G solvation = -28325.995018 eV Core-core repulsion = 24325.835314 eV Total energy + Delta-G solvation = -4000.159705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.84758 -38.97695 -38.31247 -37.17132 -34.81651 -33.52278 -32.58270 -31.18251 -30.68626 -29.47022 -27.62528 -26.65700 -25.78635 -24.66949 -23.55222 -22.98830 -22.59024 -21.23465 -19.98324 -18.29911 -17.44852 -17.07232 -16.73439 -16.53411 -15.92945 -15.77724 -15.53777 -15.32302 -15.13927 -14.88856 -14.83931 -14.41357 -14.06415 -13.86391 -13.65299 -13.26739 -13.04897 -12.66297 -12.56829 -12.22735 -12.18351 -12.12414 -11.95571 -11.81592 -11.74091 -11.50983 -11.38584 -11.22905 -11.14564 -10.99664 -10.85149 -10.71655 -10.65469 -10.54376 -10.15787 -10.09449 -9.66062 -9.59945 -8.86353 -8.43651 -8.35849 -7.61908 -6.04035 -4.08766 3.28063 3.29139 3.36225 3.37077 3.39524 3.47663 3.67723 4.14218 4.45017 4.51298 4.59153 4.65037 4.73737 4.82120 4.91217 4.93530 4.96948 5.00507 5.05822 5.13812 5.20401 5.22018 5.27397 5.28195 5.29892 5.32245 5.37502 5.41335 5.55562 5.61994 5.69247 5.75172 5.79477 5.88447 5.93864 5.99737 6.05010 6.17226 6.20238 6.23188 6.72364 6.98428 7.00910 7.01552 7.09300 7.46150 7.56047 7.92593 8.24280 8.44377 8.91048 9.11847 9.56357 11.04027 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.001887 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.941105 B =14837.506337 C =14992.070669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.373 6.373 6 C 0.089 3.911 7 C -0.111 4.111 8 C 0.059 3.941 9 N -0.539 5.539 10 C 0.073 3.927 11 C -0.142 4.142 12 C 0.505 3.495 13 O -0.545 6.545 14 N -0.603 5.603 15 C 0.084 3.916 16 C 0.244 3.756 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.048 3.952 26 C -0.135 4.135 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.032 0.968 47 H 0.044 0.956 48 H 0.263 0.737 49 H 0.086 0.914 50 H 0.033 0.967 51 H 0.066 0.934 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.900 10.034 3.348 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.292 6.292 6 C 0.032 3.968 7 C -0.149 4.149 8 C -0.069 4.069 9 N -0.264 5.264 10 C -0.055 4.055 11 C -0.183 4.183 12 C 0.291 3.709 13 O -0.423 6.423 14 N -0.335 5.335 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.080 4.080 26 C -0.173 4.173 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.051 0.949 51 H 0.084 0.916 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.634 9.745 2.514 30.351 hybrid contribution 1.086 1.281 1.546 2.282 sum -27.548 11.026 4.060 29.949 Atomic orbital electron populations 1.22751 0.81106 1.02924 0.99797 1.87979 1.19540 1.27226 1.95346 1.22562 0.92503 0.85545 1.00743 1.22538 0.93225 0.97327 0.88347 1.87983 1.22100 1.81784 1.37335 1.22183 0.81030 0.96461 0.97168 1.21632 0.95432 1.02702 0.95091 1.22033 0.94819 0.89309 1.00754 1.62048 1.19801 1.28971 1.15619 1.21827 0.85900 0.96312 1.01416 1.21822 0.95134 0.99700 1.01628 1.20280 0.88696 0.81150 0.80806 1.90665 1.63840 1.49118 1.38681 1.48157 1.13035 1.26735 1.45620 1.21627 0.95336 0.94453 0.94582 1.19290 0.73816 0.96127 0.98292 1.21473 0.91658 1.29391 1.13887 0.92493 1.24944 0.97762 0.95380 0.96104 1.69947 1.10311 1.38745 1.34345 0.86446 0.80199 0.79442 0.81334 1.19870 1.20949 1.20874 1.22203 0.95042 1.01897 0.88864 1.22068 0.95826 0.98357 1.01068 0.89520 0.94237 0.94045 0.91967 0.92448 0.92438 0.91938 0.92685 0.91079 0.90028 0.94748 0.89892 0.93841 0.89649 0.89431 0.88750 0.93679 0.90856 0.92533 0.95017 0.93822 0.92780 0.89533 0.94888 0.91570 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.62 10.67 -40.08 -0.43 -4.04 16 3 C 0.06 0.45 6.32 37.16 0.23 0.69 16 4 C 0.06 0.49 6.13 37.16 0.23 0.72 16 5 O -0.37 -3.89 9.96 -40.08 -0.40 -4.29 16 6 C 0.09 0.85 2.67 -26.61 -0.07 0.78 16 7 C -0.11 -1.05 5.75 -26.65 -0.15 -1.21 16 8 C 0.06 0.62 5.42 -3.83 -0.02 0.60 16 9 N -0.54 -6.46 4.81 -234.67 -1.13 -7.59 16 10 C 0.07 1.05 4.56 -3.82 -0.02 1.03 16 11 C -0.14 -2.11 3.50 -27.88 -0.10 -2.21 16 12 C 0.50 10.52 7.67 -10.99 -0.08 10.43 16 13 O -0.54 -13.77 15.56 5.56 0.09 -13.68 16 14 N -0.60 -12.94 2.86 -182.96 -0.52 -13.46 16 15 C 0.08 1.34 10.24 59.85 0.61 1.95 16 16 C 0.24 6.48 5.16 -5.19 -0.03 6.46 16 17 C -0.53 -15.08 9.38 -34.44 -0.32 -15.40 16 18 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.05 0.51 4.85 -3.84 -0.02 0.49 16 26 C -0.14 -1.33 5.72 -26.65 -0.15 -1.48 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.22 8.14 -51.92 -0.42 -0.21 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 7.96 -51.93 -0.41 0.03 16 33 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 41 H 0.09 1.16 5.47 -51.93 -0.28 0.87 16 42 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 46 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 47 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.09 0.90 5.81 -51.93 -0.30 0.59 16 50 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.60 7.96 -51.93 -0.41 0.18 16 52 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 412.99 15.07 6.22 6.22 Total: -1.00 -34.75 412.99 -9.00 -43.74 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -9.67 Total: -3.61 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 1.13 Total: 5.78 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.91 Total: -47.13 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.74 Total: -22.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.75 -9.00 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092797176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.330 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds